RNA id: XM_043238874.1



Basic Information


Item Value
RNA id XM_043238874.1
length 1168
RNA type mRNA
GC content 0.43
exon number 7
gene id cfap73
representative False

Chromosome Information


Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 11365078 ~ 11368614 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


AAGAACAGAAAGTTTTTGTCTACAGTGCGCGCGGCGCGTCTGTGCttgtggggtgaaaaaaaagatgagtttgAATTTGGAAGCTTACTTTCAGTCCATTTTCGAAGAACGACTCAGACTAAATGAGACCTCGCAGAAGGATTTGGCGGATTCGAGTTTAAGTGCAATGAAGCTCGTGGAGGTGCGCGAGGAGAGCACCAGTTTGACCAGGGCACTGGAAGCTCAAAAACAGGAGACGCAGATGCAGCGGGAGAatttaagagagagagacgaaaaCATTAAGAAAGGAGAAGAGAAACTGAAGAAATCcatactgaaatataatacGTTTTTGCAAGAAAATGATGGCAGACAGTCGCGTGCCATAAAGAAGGCGGAAGCCGAGAGAGCTCAAATCAGACTGAAAGACCTGGAGATTCAGAAGCTAAAGGCAGAGAACGACACCCTGCTGGCGCGAAAACAGTTACTGGAGGATCGTGTCAGAAAGGCCTCGTGCTACCAAGAGTTTCTGGAGAGAGCCGCAAAAATGTCCGGAAAGtttGAGAACATTGGTCAAGTCATTGACCGTCTTCAAGCGCTCCGGTCTATCCACAAAGAACTTCAAGAAAACCAAACTAGGTtagacaaagaaaaagagagcacAAAGCTGGAACTGATACAGTACCTAAATAAACAGCGAACTCTTCTCCTGCACTGTAACAACCAACTGCATCTGCAACAGACCCAGCTAGACAGCATACGCTTAGAAGCATACAAAtggGAATTAAAATTGAAGCATTTCCATTCCACTGCAGCAAAAGAGACCCTCTTATTTGCTCAGCTAAAGGCCACAATCCGTAACATTTATCAGATGATCACACATTACAGGAAAGTCTCTGTGGACACTGAAGACACCTTCAAGCAGTTGGAAATGattcagaaatattttcagCTCATGAGAGCTATAGATGATGAACTGAAGTTCAACATAATGGCAAGACCGAATCAAACTGAAGAGAATGACAGCAGAGATTAAGACCCAATCTCTGAAGATGTATATCCACTGAAAATGGATAGATGTGCCTAAGCTATATAAAAATCATCATCTGGCCACCCTTGAGGATTGTACAGGATTGTGCACTGGAATATTGCCCACGGGCATGGAGATTAAAAGGATATTTCATTAAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU52196 lncRNA downstream 34712 11304281 ~ 11330366 (-) False G35434
TU52195 lncRNA downstream 34712 11324745 ~ 11330366 (-) True G35434
TU52305 lncRNA downstream 52248 11311549 ~ 11312830 (-) True G35522
TU52216 lncRNA downstream 115072 11249199 ~ 11250006 (-) True G35450
TU52278 lncRNA downstream 144187 11219968 ~ 11220891 (-) True G35499
TU52399 lncRNA upstream 302343 11670957 ~ 11674817 (-) True G35592
TU52405 lncRNA upstream 323936 11692550 ~ 11694947 (-) True G35594
TU52415 lncRNA upstream 327577 11696191 ~ 11697674 (-) True G35597
TU52417 lncRNA upstream 329334 11697948 ~ 11699666 (-) True G35599
TU52418 lncRNA upstream 329334 11697948 ~ 11699511 (-) False G35599
XM_043238868.1 mRNA downstream 3143 11348628 ~ 11361935 (-) False tpcn1
XM_043238866.1 mRNA downstream 3143 11348628 ~ 11361935 (-) False tpcn1
XM_043238865.1 mRNA downstream 4237 11348628 ~ 11360841 (-) False tpcn1
XM_043238867.1 mRNA downstream 4429 11348628 ~ 11360649 (-) False tpcn1
XM_043238864.1 mRNA downstream 4429 11348628 ~ 11360649 (-) True tpcn1
XM_043238695.1 mRNA upstream 5188 11373802 ~ 11381783 (-) False tbx5b
XM_043238694.1 mRNA upstream 5188 11373802 ~ 11381783 (-) True tbx5b
XM_043239970.1 mRNA upstream 14066 11382680 ~ 11388895 (-) True prps1a
XM_043239971.1 mRNA upstream 14066 11382680 ~ 11388894 (-) False prps1a
XM_043239972.1 mRNA upstream 14066 11382680 ~ 11388893 (-) False prps1a
TU52116 other downstream 438915 10923927 ~ 10926163 (-) True G35384
TU52098 other downstream 491014 10868364 ~ 10874064 (-) True G35371
TU51745 other downstream 903369 10461208 ~ 10461709 (-) True G35122
XR_006251099.1 other downstream 1029736 10325115 ~ 10335342 (-) False si:dkey-96l17.6
TU51236 other downstream 1962455 9337828 ~ 9402623 (-) True G34789
TU52323 other upstream 51341 11419955 ~ 11467122 (-) False hmgn7
TU52322 other upstream 95217 11463831 ~ 11467122 (-) True hmgn7
TU52344 other upstream 215166 11583780 ~ 11652627 (-) True G35554
TU52507 other upstream 432700 11801314 ~ 11815810 (-) False msna
TU52701 other upstream 796796 12165410 ~ 12169327 (-) False sh2d1aa

Expression Profile