RNA id: XM_043238897.1


Basic Information

Item Value
RNA id XM_043238897.1
length 3313
RNA type mRNA
GC content 0.41
exon number 11
gene id flot2a
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 15821869 ~ 15838717 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGCGGTGACTAAGCGGTCCGAGCAGAAAACGGGAGGAATATGGTGTACTCAAGACTGCTTTGAGTGCCTTGcttttgtatttctgttttcaatACACAATATCGTcgtctttggaaaaaaaaccccaagtaATTTCACGTTTTGAATAGCGTTTTAAAGCCGTCGGGCAGGAAAATATGGGGAATTGCCACACGGTTGGACCAAACGAAGCCTTGGTGGTATCAGGTGGCTGCTGTGGCTCTGATGAGAAGAGCTATACAGTGGGCGGTTGGGCCTGGGCATGGTGGCTTATCACAGACATACAGAAACTCTCTCTGGAGATAATGACCATCCTCTGTCGCTGTGAGAATATCGAAACATCGGAGGGTGTCCCCTTGGATGTGACAGGGGTCGCTCAGGTGAAGGTCATGACTGACAATGAGCTGCTGGGTTATGCCTGTGAACAGTTCCTGGGCAAGACAGTGGCAGAGATAAAAAGTGTCATTCTGCAGACTCTGGAAGGTCACCTGCGCTCTATTCTTGGGACTTTGACGGTGGAGCAGATCTACCAGGATAGGGATCAGTTTGCCAAGCTGGTGAGGGAGGTAGCGGCACCTGATGTGGGCAGGATGGGCATTGAGATCCTAAGCTTTACTATCAAGGATGTGTACGATAAGGTGGACTACTTGAGCTCCTTGGGGAAATCCCAGACTGCTGCTGTTCAGAGAGACGCTGACATTGGTGTGGCTGAAGCAGAGAGAGATGCTGGAATCAGGgaagcAGAATGTAAGAAGGAGATGATGGATGTAAAATTCCAAGCCGATACAAGAATGGCAGACTCAAAGAGAGAACTGGAGATGCAGAAGGCGGCCTTCAATCAAGAAGTCAACACAAAGaaagCTGAGGCGCAGTTGGCCTATGAGCTTCAGGCAGCCAAGGAGCAGCAGAAGATCAGACTGGAGGAGATTGAGATCGAGGTGGTTCAGAGGAAGAAGCAGATCTCCATTGAGGAGAAAGAGATCCTCAGGACAGATAAAGAGCTGATCGCCACCGTGAGGAGACCAGCTGAGGCTGAAGCCTACAAGATGCAGCAGCTCGCAGAGGCAAAGAAGATAAAGAAGGTGTTGACGGCACAGGCTGAAGCAGAGAAGATCAAGCGTATTGGAGAAGCAGAGGCCGGCTCCATTGAGGCTGTGGGTAAAGCCGAAGCAGAGAAGATGAGGCTCAAAGCTGAGGCCTATCAGCAGTACGGGGAGGCTGCAAAGACTGCCCTCGTCCTGGAGGCCCTGCCAAAGATTGCTGAGCAGGTGGCGGCCCCCTTGAGTCGTACCAACGAGATTGTGATCCTGAGCGGCGACGGTGGCCGTGTTACCGGGGAAGTGAATCGTCTGTTGGCTGAACTACCTGTTTCTGTAAACGCCCTCACAGGGGTGGATCTGTCCAAGATCCCTTTGCTTCAGAAAATGACCAATCCTCAAGCTTGAACACACTCCTTCCACTCCGCTGCCTTTCTGACACTCCCACATTGATTGCCttgaaaagaaataagaaactCGAGCTGTAttgtttttacagaaatgaGGAATTgatttattggatttttttttagacccCTGGTGCCTTACCTCTGCAGGACCAGAATCTCTGCATGTGCTCTTGTTTTTGTCActtatatcctttttttttttttttttttttttttttttttttttttgttgaaacaaCATACCTCaattatagttattttgttAATCGCAGAACTGTTTCATAAAATTCACCAGTAGGCagcttcaggtgtgtgtgtctgtgtgtatgtagtgatttaaaagataaagtagtatttccattttaatgggTAGCTAAGGTTGTATTCGGTTATGTTTATGCAATGTATGAAGTTATATAGAAGTATAGCGTAGTAGAGCCATTAGATGTGTTACAGCATGTTTATTGGGTTGATCAACTGGGCGTTCGAAATCATTCATCATTTTGAAGACATTGCTCTTCAGGTCAAATAGAGAACTGACTTTTAGTTTATCTAACCAATACATTCAAACAAGAGTTTTGTttgtaaacatctttttttaatgttcaaacaGTAAACACTTTTGTTAAAAGTGGGATGAAAACaatgaatttttttgtaaacttttgCTTTTAGGGGTTGTAGGTCACATCACACTGTTACTGTATTCGTTCAATTTAAAGCTACACCATGTGATTCATAATCATATCTGTATGTATATTCTTTGAGAATGTTATAGTAAGTAGTGgtccaaataatttttttacaccaAGCAAAAGCCAAAACACCCTGAATTTAGcaggatttttaaaatgatctttattttttcattgcagAAAACCTCTGATAATTTACCTCACCCAATGTTTATGCAGACGATAAAGCTTTGGCTCTCTTCCATTAGCTGCAAGTAAGATTTTAGGACTGCAGCCAGAACCCAGTGCACTCTTATCTACTGTTAAATCGACAAATTTGATACTGTGCATTAAGTTGAACAATCTACCATGTTCGTCGTTTCCTTGAAGATGCTCTGTGCCGAGTTTATCCCATATTAAAGAacttcagttatttttaattcagttatgCAACTTGatttctcttcttcctctttatGGTTTAACCGTAATGTCATGTGTATTCTTTATTCCTAAAGTCCTAATTATCGTCATCCAGATAATGTGAGAGCTGTCAGGTTATATGTGAATTTTAACTCCGCCTCAACTACTTTTTCCCCATCGAACGTGactatattttagttttttgttgtcttCAGCTTGTTatgaaaatacaaatcaattTGCCAAATGTCAGTAGGTCAAAAAGtatatctgcatttattttacattgctgCTACATCATAAATAATTGGGTCTTTTGTTCATTGGTAATCAGATgccaaatatgttttttgttgtttgtttgttttttacagtacaCTATGGCAAAAGTATTTGTGAAAGGATATTCTATtttcattcttcaaaatgacgtgcgttttttttttcagctgggAAAAAGGGaactgtgcttttaaaatgtagccATCGTTTATAAGATGTTGCACACATCAAATCAACTTCAGGCTTTGAAAACTTTTCTATGCTTAATCTGAACTAACAAAAGCTGTTTCTGAGCGGAATGTGTTTGTTCTAGAGTTCTGTGATGTTTCCATCACTAACAATCACATACTGAGAATGTGTTATATAGCAGAGCATATAGTTAATGCCTATAACTTGTAGAatgaatatacaatatatgtaacgaataagaaatgtttctgatCACAGTCAATAAATTTGTCTTGATTTA

Function

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0005768 endosome cellular_component
GO:0030139 endocytic vesicle cellular_component
GO:0016020 membrane cellular_component

KEGG:

id description
K07192 FLOT; flotillin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54664 lncRNA downstream 7936 15812915 ~ 15813933 (-) True G37064
TU54680 lncRNA downstream 13489 15742740 ~ 15808380 (-) False fam222ba
TU54690 lncRNA downstream 38864 15777713 ~ 15783005 (-) True G37079
TU54682 lncRNA downstream 66477 15743714 ~ 15755392 (-) False fam222ba
TU54683 lncRNA downstream 66477 15753971 ~ 15755392 (-) False fam222ba
TU54694 lncRNA upstream 1609 15840326 ~ 15841630 (-) True cxcl11.4
TU54651 lncRNA upstream 18523 15857240 ~ 15859084 (-) False cxcl20
TU54657 lncRNA upstream 22360 15861077 ~ 15865160 (-) True G37058
TU54727 lncRNA upstream 55967 15894684 ~ 15978740 (-) True G37092
TU54728 lncRNA upstream 67566 15906283 ~ 15910873 (-) False G37093
XM_043238745.1 mRNA downstream 13550 15757208 ~ 15808319 (-) False fam222ba
XM_043238744.1 mRNA downstream 21281 15757208 ~ 15800588 (-) False fam222ba
XM_043238743.1 mRNA downstream 22731 15757208 ~ 15799138 (-) True fam222ba
XM_043238308.1 mRNA downstream 93863 15726844 ~ 15728006 (-) False emc6
XM_043240512.1 mRNA downstream 112439 15703533 ~ 15709430 (-) False cenpv
XM_043238539.1 mRNA upstream 1900 15840617 ~ 15841678 (-) False cxcl11.4
XM_043240108.1 mRNA upstream 4276 15842993 ~ 15843844 (-) True LOC122345699
XM_043240103.1 mRNA upstream 7489 15846206 ~ 15847033 (-) False LOC122345695
XM_043240602.1 mRNA upstream 11104 15849821 ~ 15850648 (-) True LOC122345991
XM_043240604.1 mRNA upstream 16203 15854920 ~ 15855779 (-) False cxcl11.1
TU54668 other downstream 93761 15726855 ~ 15728108 (-) False emc6
TU54667 other downstream 93959 15725027 ~ 15727910 (-) True emc6
TU54666 other downstream 93959 15726782 ~ 15727910 (-) False emc6
TU54665 other downstream 93959 15726855 ~ 15727910 (-) False emc6
TU54499 other downstream 112481 15703752 ~ 15709388 (-) True cenpv
TU54705 other upstream 7319 15846036 ~ 15847036 (-) True LOC122345695
TU54710 other upstream 16217 15854934 ~ 15855808 (-) True cxcl11.1
TU54865 other upstream 415432 16254149 ~ 16256739 (-) False LOC122344710
TU54936 other upstream 537791 16376508 ~ 16378495 (-) False LOC122344728
TU54976 other upstream 758138 16596855 ~ 16633121 (-) True G37258

Expression Profile