RNA id: XM_043238899.1


Basic Information

Item Value
RNA id XM_043238899.1
length 6555
RNA type mRNA
GC content 0.42
exon number 10
gene id rorb
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 10408635 ~ 10433693 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTCGCGGAGGCAGTGAAAACCTCCGGTGGGTATATGCGCTCGCAGATGTCATGTGAAACCCCGCATGCTGGCCTTACCGCACAACTGAAGAGTCCGAGCACCGCTTCTCGCACCTCTGGAATGGTTTTGCACAGTAGTCTCCCTCTTTGAAGAGACCAAACTTCACCACCgaggattttgtttttttactctggtttatgtttgtttcttcatgacTGACGCGTTCGGGAGCGAGTCGCCACCACTATGCGAGcCCAAATCGAAGTCATACCATGCAAAATCTGTGGAGACAAGTCATCAGGCATCCACTATGGAGTCATCACATGTGAAGGCTGTAAGGGTTTCTTCAGACGCAGTCAACAGAACAACGCGTCCTACTCCTGTCCCCGACAGCGCAACTGCCTGATCGACCGAACAAACCGCAACCGCTGCCAGCACTGCCGGCTTCAAAAGTGCCTGGCACTGGGCATGTCCCGGGATGCTGTTAAGTTTGGCCGCATGTCCAAGAAGCAGAGGGATTCTTTGTACGCAGAGGTTCAGAAACACCAGCAGAGGCTTCAAGAGCAGCGGCAGCAACAGACGGGTGAAGCGGAGGCCCTCGCCCGTGTTTACTCTTCCAGCCTCACCAACGGCCTCAGCACCCTCAACCATGAGATTGGGGGGACGTACGCTAACGGTCATGTCATAGACATGCCCAAGGGTCAACCCAACGGCGCACCCGGAGGCTACTACGGAATGGACTCCACACAGGCCAGCCCGGATCAGTCAGGACTGGACATGACTGGAATGAAGCAGATCAAACAGGAACCCATATACGATCTCACCCCCGTTCCCAACCTTTTCACCTACGGCTCCTATCAAGACAGCCAGCTAGCACCTGGAGTGTCTATGGGGGAATTAGACCGAATTGCACAGAACATCATAAAGTCCCACCTGGAGACGTGTCAGTACACAGCGGAGGAGCTTCAGCAGCTAGCCTGGCAGACGCACTCCTACGAAGAGGTCAAGATGTACCAAAGCAAGacacGGGACGTGTTGTGGCAGCAGTGTGCTATACAGATAACTCATGCCATTCAGTACGTGGTAGAGTTTGCAAAGCGCATCACTGGCTTCATGGAGCTTTGCCAGAATGACCAGATATTACTACTTAAATCAGGGTGCCTGGAAGTAGTGCTGGTCAGAATGTGCCGGGCATTCAACCCCCTCAACAACACGGTTCTGTTTGAGGGGAAATATGGAGGCATGCAGATATTTAAAGCTCTAGGCTGTGATGACCTGGTCAGTGCAGTGTTTGACTTTGCCAAGAGTCTGTGTTCACTGCAGTTAACGGAAGAAGAGATTGCCCTGTTTTCTGCTGCCGTGCTCATTTCTACAGACCGGCCGTGGTTAATGGAGCCCAGGAAAGTGCAGAAGCTACAAGAGAAAATCTACTTTGCCCTGCAGCACATCATGCAAAAGAACCATCTGGACGAGGATGCGCTGGCCAAGCTGATTAGCCGGATCCCCACGCTGTCGGCTCTGTGCACCCTCCACACAGAGGAGCTTCAGGCCTTCCAGCAGCTCCACCCAGAGACGGTTAACATGCTGTTTCCCCCCCTCTATAAGGAGCTTTTCAATCCTGATGCCGCTGGCGTCATGCCCAAATGACCGCGCACGTTCACACGCACACTTCGCAAAGTCTTTCATTCAACAACCGGAGGCGTTGCAGAGGATGAGCACTGTGTCGCAGCATCCGCAGATTTTGCAgccacaaaaaaatgaaactctAGGAATGTCCTGCACTTCAAAAATCCAACTCAATTTCACCGGTACAGTCATAAGAATGTATATATGCGCCAGCAGCAAAAGGCGCCTTCCGTTTGACCAGAAATGTACAGACTTTAGGACAATTTAAGCTGTCTTTAAATTGGGTAAGTTAATTTGTTTGActtttctcgctctctctctctctcactttttttattttacacaaaatattgtTCTATTGAAATGAGAAGGTGGGGAGTGCATTCGAAATTATAATGTAGTCTTTCTCTAGTACAAAGCGGTATTCCAGTATTAAATCTTGTTCTGTTAATATTTTagtcataatttaaaaacaacagtggtCTGAAAGACCCGTACCTTGTCTAATTGTAATTTTTCGtatttgttttgtagttttacCTGTACAGAATATGTGAAGTTGAAACTGGTATAAGGTTAACGGGGGACTAACTTTGTTTGGCCACGTTTAAAAGCCTTGTCTGGGCTATGTAGATATGTATAAACGCCACCACAACAATAATCCTACAACTAAGGATTTTGAAGTGgaaaaataattgataataattgaTACTTTTCCATACAAAAGtatagagatatatattttacaaaaattgtatGGCCGATTACCATCTTGTCAGTCATAGCTGCAGTTTCTGtaactgctaaaaaaaacaatctggtCAAACGTGACTTCACGGAAAGCCCTCAGAATTCTTTGAATCTATTATCCTGTTTGCTCTAAATGCctcaaaatgctgtttttactgcCACACTGCCAAAACTAATATAGCACTACTGTAGTTGAGCTGCAGCTGTTTGTCTGGGAAGACAGGAATCACTAGTACAGTACATGACCATTTACTGCCAGTGATAAGAAGTTAAACGTAACTCTTTTCTGCCACATTCATACATCATTCTCTGACTTTAGCAATAATGCCCAGGACAGGCTGGGTCTGTGGTATTCTTAACTTTATGCTAAATGTAAAGCACTCATCCTCATCAATTTATTAACTGTTTTTTGGACAATGCATAATTCAAGGTAAAAATCAGTCAGttgcaaaaattaagttttataaaGAAACAATCATGAAATTTAAGTAATAAGGTGGAGctgactaaatattttttttatacattctaTTGGAATTTTAATCATGATTTAGAACTAATCCTGAAAGATCACAATCAATTAATTCCTATATAAAACTAAGATCCCAGTGGATAAACTGCAATTTTACATGttcttatttatgtatttattattttatttatttattaactttttcaACAAAAAGTGCAACATTTAGgaataaaaaaggaatattgTTCCAATTCGGTAATTGTCTTTGGATCTACCGGAACAATTTTAGAAACAATCTGAGCAAATATGACAGCATTACCAGTCATTCTTAAACAACCACAGAGAAGTTTCCTATAATTCAATATTGCTGAGCATCCTTAACTTGCTGTAATCCACTGTTTGTAAAATCTTAATGCAAGTGGGATATGACAATCATCTTTGACTACTCATATTGCAGGATAGAACCACAAAATGCAGCTACTATAAATTAGGGTACCTATTAATTCTACAAAGGTAGTTTGGGTTTGGACCCTTTCGGTCCAAGGTAAATCTTGTAAAGTACCAACTCATACCACCAGGTGGAGATACTGAGAGAGCTTTTCCCCCTTCTCTTGACCTGTACTCACAGGATGTAAAGCCATATGTCAGTTTCTTATgaaggaaaaaacacaaacacgcaagCTAGGAGTTGACATGCGGTTATACCGATCAGTGAATTTTTAGTAGGTCttgatgcatttatattttgaaatgcacttGAAAGCACTTAACAATGAAGGATTAATAACTACAGATGGTATTGGTattaaaacatgcacaaatgtAGTCTGCTGAGAAGCAATTATACTACCTGTTCAAGTCCTCCTACTGAACCAAACGCTCTCAGCCCAACTTTAGGGAATGTTTCCAGTTCCTTCAGTGTCAGTTACCTGTTCAAGACAATCATTTCTGGGTGCATTTTTTCTTGGCACCCATCTCAGGGACttctcttttaatgtttttaatagaaagagagtactatttaaaaaaaaaaaaaaggacatttttaggGAATAAAATACAATCACAGCGGTTTCTTCACATACAAAACCAACCCAGACAAggctttggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgcgtgcgtaaAGCGTATACCCACCGTTGAGAGGTGAAACAAGCTTGACTGTGGAGAAGGCCTCGCCGCACTGCATCGCTTGTTGCACATCCCAGCAaaacagctctctctctctctctctctctctctctctctgtaaataTCAATGTGCAGCAGTGTACTAGCAACGGTGCCTGTGCTCCAAATTAAAACGTTGTAATTATTAAGCATCTCCTGAAATGAAATGGATTTTATGTAAGTTAGATTATTTATACAGGGCATGAATAAGCTGCTCTCTATCTATTTCTATGCTCATTACAGAAAATGGATTCagtcagaaatcattttaaacttatgatgaaggtttttttttcgtATTAGACTGTGAATTGAGGGCGAGAGGAATTTGTATCTATATGAGAGGTTCAACACTGTTAGGTACTGTAGCAATAACTGGAAGCATTTACTACAGTCATCTTTGCATTctaagattattttttattttattataattatattattattagcctaTTGTTCAGTTATTCTTGCATGCTGGTTCATAATAATGAAACCTTTGggcttttgtgttttcttatgTGTTGCTGATGGAGGGTGGGCAATGGGGAGGGGGTGGAGCTGGGCTCGGGCTTTTTATTCTGAATGTTTCTGGGGTGTTGACGGAACTCAACACACCCTGTTCATTCTTTTCGCGCACACAGACATAAGCACAAAGTATTTCTTACTGTGTAGGAATAAAACAAGGGCACAGAAGGTCAAAACGTACTTTTACTCAAGCGCGCGGAATCAAAGCTTAAAGACGCCGGTGGTTACGCACTAGGGGCGTTATGGCGGGAATTTTTCCATGAGGACAATTCTATTATGTGGGAGCAACAGTTAGTTAATGTCTGTTTACTACAACTTACCCGAGTAATAACATCTGGGGTTCTGTCAGATACATCTTGAATGTAACTTTATCGCCCTCGTGAGGTTTGTTGTAGCCGCTAAAAccagggctgtccaaactcgCTCCTGCAGGACCGGTGTCCTGCGGAGTTTCGCTCCAGCCCTAAATcagacacacctgaagcagctagtCAGTGTCTTACTAGGCATGTTAGAAACTTCcatgcaggtgtgttgaggccaATTGGAGCTAGACTCCGCCGGACACCGGCTCTCCAGGACCGCGTTCGGACAGCCCTGCGTAAACCAACGCAAGGGCTCGCGTTGGGAGTGCGTCGATTAAGCGCTTGCGTCTGCGTACTTTGAGTATGTGTCAGCTCCTAAAAAAGCGACCCCGTACCAGCAAACCAGCtataagtataattaaaaaaatgtagatttgtGCATCTTCTGAAAGCTAAATATataagcttttcattgatgtatagaaaatacatttgttaGGATGGGCACattttgaaactattttaaaatagaaaaaaaggaaattcaaaatattgagaaagttGTCGATGAATGACAAGtacttattacaaaaaatacaaaaaatgctcatggaacatgatttttagGCTACTTCATATTctaatgaatacaaatttgatCCATACAATGCATAGttggctattgctgcaaatatacacattataccGATgagtggttttgtggtccagggtcacatattagcAGTCTCTTATACTTCCGCTAATTGAGTTATATCAACTACATTAGTCCTACACTTGAAATGAAGGaaacgtgtctgtgtgtgattttgAGTGGTATACCCACATGTGACAACAGACGGCTATTCTACTGAACACTACTGATGCATACtacacatttcagtttttccccttttcttttcttaaatattttgttaatttatgaATCGGAATGTGTCTGTCTCCCTcgatgaaaaaacaacaacaaacaaaggtAGCATCTGTTACCAAAACCCTTAAGACTGTATGCGTGCAGCATCTTTTTATGTactaaatatgtaaacatttttgttttcaagtgCCATAGCTAGTGTGAAGTGAAGCTGAATGGCATTACGGGGTAGATGCTTTACTGTATAAGTTGTTTACTTGAGAAGCAATCAAAAAGTGGAATTCAGATGCAAGTGTGAATATTCAAACAACCAACTGTTTGTTGTTCATGGAGAACGGGCTCTGATTGACAGAACTTTAGCGCATGTCCACAATACAAATAAAGCACATGTAGCATGGGAGGGTGGGGGCTTCTGTTAACTTGCCAacagtttgagtgtgtgtgtgtgtgtgttgtatgtacTGTATAAGTGAGTTGGACTGTAAGACAGTATAGAAATGAATGGTGAATAGCACTTTGTGTGATGGACTGAATACGTATGCATGTACTCGTTTGAGTCTGGGGGGGTGGGTTGAGCTTGATGTGCAAGCATTGTGAAATGGACATGTCAAAGTACTGGTTAATCGAGACCTCAAAGTGTCTCCTCCATGTTGTATATACTAAGCGAAGGACTTAAGTGATTTTTGttaaattctatattttatggCTTTTGTAGACATTTCTTtgtgggataaaaaaaaataaagaaaattttatGGA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0004879 nuclear receptor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08533 NR1F2, RORB; RAR-related orphan receptor beta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51632 lncRNA upstream 74827 10333219 ~ 10333808 (+) True G35043
TU51631 lncRNA upstream 78313 10329889 ~ 10330322 (+) True G35042
TU51630 lncRNA upstream 81174 10327031 ~ 10327461 (+) True G35041
TU51629 lncRNA upstream 81921 10325866 ~ 10326714 (+) True G35040
TU51492 lncRNA upstream 116774 10288424 ~ 10291861 (+) True G34959
TU51689 lncRNA downstream 113528 10547221 ~ 10547625 (+) True G35081
TU51833 lncRNA downstream 379764 10813457 ~ 10816301 (+) True G35197
TU51838 lncRNA downstream 404319 10838012 ~ 10838367 (+) True G35202
TU51871 lncRNA downstream 511363 10945056 ~ 11019192 (+) True G35229
TU51912 lncRNA downstream 703359 11137052 ~ 11147242 (+) False LOC122346180
XM_043240706.1 mRNA upstream 47568 10342197 ~ 10361067 (+) True mfsd3
XM_043240707.1 mRNA upstream 47568 10342216 ~ 10361067 (+) False mfsd3
XM_043240819.1 mRNA upstream 67515 10337223 ~ 10341120 (+) True anxa1a
XM_043240831.1 mRNA upstream 84000 10319660 ~ 10324635 (+) True LOC122346143
XM_043240832.1 mRNA upstream 84000 10319685 ~ 10324635 (+) False LOC122346143
XM_043239810.1 mRNA downstream 35983 10469676 ~ 10524790 (+) True abca2
XM_043239812.1 mRNA downstream 35983 10469676 ~ 10524790 (+) False abca2
XM_043239813.1 mRNA downstream 35983 10469676 ~ 10524790 (+) False abca2
XM_043239811.1 mRNA downstream 35983 10469676 ~ 10524790 (+) False abca2
XM_043239817.1 mRNA downstream 93397 10527090 ~ 10531080 (+) False dph7
TU51450 other upstream 290509 10064217 ~ 10118126 (+) True fam219ab
TU51316 other upstream 609277 9796390 ~ 9799358 (+) True si:ch211-102c2.4
TU50789 other upstream 1537117 8867513 ~ 8871518 (+) False man1b1b
XR_006251032.1 other upstream 2104484 8289720 ~ 8304151 (+) False snx19a
XR_006250944.1 other upstream 2398036 8001578 ~ 8010599 (+) False spns3
TU51709 other downstream 295425 10729118 ~ 10731052 (+) False osbp2b
XR_006251113.1 other downstream 493130 10926823 ~ 10933163 (+) False senp3a
XR_006251083.1 other downstream 612787 11046480 ~ 11062314 (+) False map7d2a
XR_006251021.1 other downstream 1490535 11924228 ~ 11942072 (+) False smarca1
TU52593 other downstream 1815445 12249138 ~ 12255672 (+) True G35720

Expression Profile