RNA id: XM_043238911.1


Basic Information

Item Value
RNA id XM_043238911.1
length 2017
RNA type mRNA
GC content 0.43
exon number 6
gene id zc4h2
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 11840476 ~ 11845269 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCGCTGTGCGATATGACCGCCGCACTCCCAACTTTACTGTTCAGAAGGTTGATACGGTGTTCAGCAGTTGTTGTTATTACCCTAGCATCCTTTGCAACGAATGAACAACGCCAAGACTGGCTAAACTGTTAGTTCAACGAAGTCTCACAGTTTCGTACGTCCACCATGACGGACGAACAAGAGATAATGTGCAAGCTTGAAAACATCAAAGAAATAAGGAATAAGACAATTCAGATGGAAAAGATCAAATCTCGGCTGAGGAGTGAGTTTGAAGCTCTGGAGTCAGAGGAGAAGCACCTGAGAGAGTACAAACAGGAAATGGATCTTCTGCTGCAAGAGAAAATGGCTCACGTAGAAGAGCTGCGTCTCATACATGCTGATATTAATGtgATGGAAAACACTATCAAACAGTCTGAAAGTGACTTGAACAAACTGCTGGAGTCAACCAGACGTCTCCACGATGAATACAAGCCACTGAAAGAACACGTGGATGCCCTGAGGATGACCCTGGGCTTACAGAGACTCCCCGACCTCAGCCAGGAAGAGGAGAAGCTCTCATTGGACTACTTCGAAAAGCAAAAGGCTGAGTGGCAGACAGAACCACAGGAGCCTCCTATCCCAGAATCCTTAGCGGCGGCGGCGGCTGCAGCCCAGCAGCTTCAAGCTGCACGGAAACAGGATGCCAGACAGACAGCGACATTCCGCCAGCAGCCACCTCCTATGAAGGCTTGTCTGTCCTGCCACCAGCAAATCCATCGGAACGCACCGATCTGTCCTCTCTGCAAAGCCAAAAGCCGCTCACGCAACCCTAAAAAACCCAAGAGAAAACCCGACGAGTAACATGCGCAGCTACCAATAACCTCAGAGAAAGCCCGACTAACACACATAACCCCAACAGAAAACAATTTACTTACATAAACGCGTTCACTTGCGCTCTCATGCATGCACAtttccacacatacacacactcactgcacaTCTGTACACCTGAAGGTATATAGTCCTGAAGGAACGGAGCATCTGCAGCCTGATACCCTGACCTCTTATAGTGATCCTGTAGTTAACCCGTCTTCCTGCTTCAGTGGACATGAGGTCtcagtttttcatttcttttttctataaGTGAAACCTCGATATTGTGTTTGTACCGTGTCTGTATTTAGTCCGTAGTGGATATGGATGCTGGTTTAGAAATATCGAAGCGTCCTGTTCTGTGTGGGGTTTAATTCTAGTGCATTAGTTCCAAAGTAAATTCTCTAAAGTGGCTTTAGTGAACAGAGCCGTTCGGACGGTAATCAGTTAACACTTCAACCGATATTTAGTCATTTGAAAGAATTAATAACGGTATGATTTTGCCTatgtcttttaatgttttttccctCACGCTAACAGTGTTTTTCTTGTATTATGTAACCATGGTCTATCCCAGACCATGTCAGTGTTCTAGAATGTCTTGAGGGCCGTTCACACAAGATGTAGATGAAGAGCATTGAAATGGATAAGAACGAGTTTTTAACTTGAAGCGTCTTTAAGAATGCGGTGCTAATGGCAGGAGACGCTGGAAAAAGGCAAACACTCCGCTTACAAAGACCAACGATTAATGCAGACTGAATGCAAAAGCATGTGTGAACAGCCCTTTAGAAGTAGAGTAATTATGGAAGTTGAATGAGAATTCTAAACCTCGAGTTCTTATAGATCTATCATTCAATTTGAGCGAATGAGCtgttatttgtgttttggaATTTGACCCGAGGGGCATTAAGAGCGTGTTATAATCTTCAGTATTGAAtcgttgtgtttgtgttcatctttTCTGAGAGtcagttttttaataattaaaacctGTGAACTAATAAACTTGTGTAACTTTTGTCGAAATGAAATTGTAGAATAATACAGTGTTATCTGATGGATTCGCTTTCTCTCTGTCGCTCTGTCTGGTATTGGCTTGATATGTATCTGGAATTTGACCTTTCACCCATGACCCCTAACAAGCAataatcattctttttttctt

Function

GO:

id name namespace
GO:0021522 spinal cord motor neuron differentiation biological_process
GO:0007528 neuromuscular junction development biological_process
GO:0048666 neuron development biological_process
GO:0045211 postsynaptic membrane cellular_component
GO:0005634 nucleus cellular_component
GO:0030054 cell junction cellular_component
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K24369 ZC4H2; zinc finger C4H2 domain-contaning protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52458 lncRNA upstream 64984 11773986 ~ 11775492 (+) True G35629
TU52435 lncRNA upstream 111875 11728276 ~ 11728601 (+) True G35606
TU52389 lncRNA upstream 132703 11707531 ~ 11707773 (+) True G35585
TU52388 lncRNA upstream 133478 11706659 ~ 11706998 (+) True G35584
TU52094 lncRNA upstream 187793 11650628 ~ 11652683 (+) False glra4b
XR_006251023.1 lncRNA downstream 98168 11943437 ~ 11986820 (+) True LOC122345698
XR_006251022.1 lncRNA downstream 135086 11980355 ~ 11986820 (+) False LOC122345698
TU52608 lncRNA downstream 328014 12173283 ~ 12182024 (+) True G35733
XR_006250985.1 lncRNA downstream 432861 12278130 ~ 12279983 (+) False LOC122345282
TU52639 lncRNA downstream 433966 12279235 ~ 12283749 (+) False LOC122345282
XM_043238908.1 mRNA upstream 16865 11817352 ~ 11823611 (+) True las1l
XM_043238446.1 mRNA upstream 116003 11717560 ~ 11724473 (+) True gpr83
XM_043238163.1 mRNA upstream 136957 11701042 ~ 11703519 (+) True LOC122344640
XM_043239987.1 mRNA upstream 140957 11689917 ~ 11699519 (+) False LOC122345658
XM_043239567.1 mRNA downstream 7022 11852291 ~ 11860972 (+) True mtmr8
XM_043239568.1 mRNA downstream 15775 11861044 ~ 11864442 (+) True asb12a
XM_043239569.1 mRNA downstream 15775 11861044 ~ 11864442 (+) False asb12a
XM_043240199.1 mRNA downstream 19929 11865198 ~ 11871038 (+) False amer1
XM_043240202.1 mRNA downstream 20082 11865351 ~ 11871038 (+) False amer1
XR_006251083.1 other upstream 778162 11046480 ~ 11062314 (+) False map7d2a
XR_006251113.1 other upstream 907313 10926823 ~ 10933163 (+) False senp3a
TU51709 other upstream 1109424 10729118 ~ 10731052 (+) False osbp2b
TU51450 other upstream 1722350 10064217 ~ 10118126 (+) True fam219ab
TU51316 other upstream 2041118 9796390 ~ 9799358 (+) True si:ch211-102c2.4
XR_006251021.1 other downstream 78959 11924228 ~ 11942072 (+) False smarca1
TU52593 other downstream 403869 12249138 ~ 12255672 (+) True G35720
TU52594 other downstream 403869 12249138 ~ 12255672 (+) False G35720
TU52818 other downstream 668807 12514076 ~ 12516108 (+) False si:ch211-225b11.4
TU52846 other downstream 858102 12703371 ~ 12705241 (+) False iscu

Expression Profile