RNA id: XM_043238915.1


Basic Information

Item Value
RNA id XM_043238915.1
length 1415
RNA type mRNA
GC content 0.43
exon number 10
gene id LOC122345089
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 31668017 ~ 31671608 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCTTATTTTACACTCATTTCATGGTCTGATAAAATGGAAATGGACGGCTCAGAAGAATACGTTCAAATGGAGATGGAGCGAGAACCAAAGAAATCATTTCAGAGAGgTCATCCCTGCGGCAGACAAACTGGCATACTTGTGTTTCTCGGAACAGCATGCACGATTATTTTCATGGTCATGACTTCTGTCATCTATTCACACCAAGAGCGAAAGTTCTCAGTGCTGCAGAGCTGGATGAACAGCCACACTTCTGATCTAACCTCAGTCAAATCTGATTTCCAGATCGCAGGTGGTGATCTAGAAAAGAAGATTGCTGAGCTGCAGACCTCAGTGGCCAGCTTGAGGTCATATTCGAACACATCTGGAGCAAGTAGGGaaatgcaaataaagaaGCTGTCCGCTATTGAGACTCTGATGACTGATCTTGGCTCTTCGCTGAGTTCACTCGCATCCAAACATGAAGAAAACCTACAAAAGCTGGAGCGCCAGCGGGACGTGTCACACACCGAAGTCAAGAGTTTGATGGACAGTTTGAGTTCTGCGGTGTCGGTTCTTAAGGATGAACTGGCGGAGGACAGCTTGGTGACATCTATTGTGGCTCTGCATTCTATtccacacacacagcagatcTTGATGGCCATGTCAAGATCACTGTCGGACATAAAGCATTCAGTAGCGGGACTGAGATCATCTATTCAAACTATTTCTTATAAACTATCATTTACAAatTTACTCACACACGGCTGTCCTGAACCTGACTGGATCCCGTTCAGAAACAGCTGTTACCTGTTCTCACAGGACGCGATGAACTGGACCAACGCAGAGGATTCCTGTGAAGAGAAGGGCGCATTGCTACTAAAAATCGAAGAAGGTTCCGAGAAGGAGTGGCAATTTGTTACCAATTTCGCCAAACCGCACGACTACTGGATTGGTCTCACTGACCAGAACACAGGGCAGTGGAGATGGACGGATGAAACTCCTTACATTATGAATAAAGAaCATTGGAGACCTGGGCAACCCCATGACTGGACCGAACACGGCCAGGGAGACGGAGGAGAGGACTGTGGGCAAATTTTACATGACGGGATGCTGAATGATGCCCACTGCTCTACTAAAATGAAGTATATatgtgaaatgcaaatgtgaaaGCGCAGCGTAAACGGGGCTTTGTTTCGACTGCGTTAAGTTTTTGTGTATTGCGTAAATTACAAATCACAATGTGTCGTTACTTAAATTAGTCTTTCTTTCCAAATTAAccaaattaattattaagttaaaaagattaGTTGTGTGTTAGCTGTTAATGAAGCTGTGTCACTCAACTAAATGcaatcaaacacagctggaccaaagggtctgaatacttatgaccatgtgacattttagtttttcttttttaataaatctgcaaaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60767 lncRNA downstream 19405 31646858 ~ 31648612 (-) True G41034
XR_006251025.1 lncRNA downstream 169923 31456500 ~ 31498094 (-) True LOC122345708
XR_006251024.1 lncRNA downstream 169923 31461934 ~ 31498094 (-) False LOC122345708
XR_006251026.1 lncRNA downstream 169923 31477391 ~ 31498094 (-) False LOC122345708
TU60685 lncRNA downstream 172748 31435649 ~ 31495269 (-) True G40996
TU60737 lncRNA upstream 12366 31683968 ~ 31684836 (-) True G41019
TU60730 lncRNA upstream 20264 31691866 ~ 31695788 (-) False G41018
TU60732 lncRNA upstream 20264 31691866 ~ 31695788 (-) True G41018
TU60733 lncRNA upstream 20264 31691866 ~ 31695788 (-) False G41018
TU60772 lncRNA upstream 40749 31712351 ~ 31732259 (-) True G41037
XM_043238913.1 mRNA downstream 402 31661478 ~ 31667615 (-) True si:ch211-283g2.2
XM_043238912.1 mRNA downstream 8355 31651505 ~ 31659662 (-) True si:ch211-283g2.1
XM_043238265.1 mRNA downstream 54187 31600225 ~ 31613830 (-) True LOC122344717
XM_043238269.1 mRNA downstream 69707 31594477 ~ 31598310 (-) True LOC122344719
XM_043239012.1 mRNA upstream 2713 31674315 ~ 31683580 (-) False srrt
XM_043239011.1 mRNA upstream 2713 31674315 ~ 31683580 (-) False srrt
XM_043239010.1 mRNA upstream 2713 31674315 ~ 31683580 (-) False srrt
XM_043239009.1 mRNA upstream 2713 31674315 ~ 31683580 (-) True srrt
XM_043239558.1 mRNA upstream 30851 31702453 ~ 31711737 (-) False apooa
TU60335 other downstream 841659 30819515 ~ 30826358 (-) True G40752
TU60340 other downstream 841659 30819515 ~ 30826358 (-) False G40752
TU60266 other downstream 875298 30789633 ~ 30792719 (-) True G40713
TU60256 other downstream 971329 30631028 ~ 30696688 (-) False G40711
XR_006251005.1 other upstream 30851 31702453 ~ 31711737 (-) True apooa
TU60769 other upstream 49668 31721270 ~ 31722906 (-) True G41035
XR_006251008.1 other upstream 450682 32122284 ~ 32173823 (-) False tnca
XR_006251085.1 other upstream 542674 32214276 ~ 32293782 (-) False LOC122346090
XR_006251086.1 other upstream 542690 32214292 ~ 32293782 (-) False LOC122346090

Expression Profile