RNA id: XM_043238930.1


Basic Information

Item Value
RNA id XM_043238930.1
length 6111
RNA type mRNA
GC content 0.45
exon number 22
gene id npas2
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 11527062 ~ 11573963 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGTTCAAGTGCGTTCCTGACATGTGTGTCTTTTCTCTGGCGCGTGTGTGTGAGGCTGCGGGCGGTTAGTGCTGTCGTTGGTTGAGTATTGAGCTCCAGTCTGACCTACTTTCGTACTTCGCATCAGCTCAGCGCTGTTTACAGGCGCTCGTCGGCAGAGGATGTGGACCCGGTAACGAAAACACGTCGCCGAAACGCCGAGTCGCGTGCTCTCCCGTGCCGCTTTTATCCTGGGGATCTTGACTTAGCGTGGTTAGTGCGTATTTTGTCCCGTGTCCCACTTCAGAGTGGCTCTTTCGTGGCTTGTTTGAGGTAAAGGCGAGCTCACTCGTGGATTCGGCGTAAGAGACGCGGACGAGGGCAAAAGTGAAGCGTGAACCTGTGACGTTAGTCCTTAACGCACGGTCCTTCTGTTTGTAACTTcatggagagagaaaacactTTTGCAAGTGTACATTAACAATTGTCGTCTGGATGTCAGTAGTCAAGATAAACACTATCTTGAGGTTTAAGCATTTAAGGACTGGCTAGCCATAGGAACATAACTACAATATCTATTGGCTGTCAGTCAATACCGGTGAATAGCCTTCAGAGATTTGTGAGTGGTGGCTAACCACAAGCATTAGGCAGTTAGCTTGTAGCGTCCATTAGAATTTCTGTGGGTGTTTCGAGCGTGGAAGACACGAATGGGACACTCTAGCCTTTCCAGACGGCCTGAATGGGAGAAGGAGTGAGCATGGACAACCTTTTGGAGTTTGGAGGCCTTTGTCCATCCACCCGGAGGGAATGGGAcacagggagctgtGTGGATGATTTAATGGATGAAGATGAGAAAGACAGAGCAAAAAGGGCGTCCCGTAataaatcagagaagaagagaagagaccAGTTCAATGTTCTCATTAAAGAGCTGTGTACGATGCTGCAGGGTCAAGGTCACCCCCGCAAGATGGACAAATCCACAATCCTGCAGAGAACCATTGACTTCCTGCAGAAACAGAAAGAAATCACAGCGCAAACAGAATCCTGTGAGGTCCGGCAGGACTGGAAGCCTTCTTTCCTCAGCAACGAGGAATTCACCCAGTTAATGCTGGAGGCATTGGATGGTTTCCTGATAGCGCTTACCACAGATGGGAACATCATATATGTATCTGACAGCGTCTCATCTCTTATTGGTCATCTGCCGTCAGATATGGTGGACCAGAACATTTTGAACTTCCTGCCAGAACGAGAACATGGAGAGGTGTATAAACTTCTGTCATCACACATGCTCCTGACAGAGCCTTCTGCTGTGGACCTACTCAACAGCAatgaGACACACGTTGAGTTCTGCTGTCATTTAGCAAGGGGGAACATTGACCCAAAAGAACCGCCCACTTACGAATATGTCAAATTTGTTGGAGATTTCAAGTTTCATAATAACGTGCCTCTGTCCTCATGTAACGGTTATGAGCTGGCATTTCCGCGCACACTGCAGTCTTCACTAGAGGAGCAGATCTGTCTCGTAGCCACAGTGAGACTTGTGACCCCTCAGTTCCTAAAGgaTCTGTGCAACGTGGAGGATGTGTGTGATGAATTCACATCAAGACACAGTCTGGAATGGAAATTTCTCTTCTTAGATCATAGggCCTCGCCTATCATTGGGTACCTGCCGTTTGAGGTTTTAGGGACCTCGGGTTACGATTATTACCATGTGGACGACCTGGAGTTGATTGCTCAGTGTCACAAACAATtgaTGCAGTGTGGGAAAGGAAAATCCTGTTACTATCGGTTTCTGACTAAAGGGCAGCAGTGGATCTGGCTACAAACACACTATTACATCACATACCACCAGTGGAACTCCAAACCAGAGTTTATCGTCTGCACACACAGTGTGGtcagCTATGCTGAAGTCCGAGcagaaagaaggagagagatTGGATTGGAGGAAAGCTCATCTGATATGGCAACATCCTCAATTAAGgGGCAGGAGGTGTTTTTGGACATGTGTCCTCCTTTGGAAACTACACGAGAAAGAATCAGCAGCGCTCGATCAGTGTCGTCACAGAGTTCTAGGAAATCTTCACACACAGCGCTGTCTGACTCGGCGTCGAACTCATCGGTAAGGTACACAGAGGCATGCACGTCGTCACGACAATCCGCTTCTATTGGTCCTGAGAAGAGTTCCAACAGAATGCCACATAGTGGATCAAAGAGCCTGATTCAGAGGCAGAGCTCCTCTGAGCCCACATCACTCTCCCCCTCCTGCAGTCAGCATTCCACTATGACACAGTCTCTGTACGGATTCCAGCAGCCTCAGTTAGGCGTCATGCATCAGCTGAAAGAACAGCTAGAAGAGCGGACGCGCATCCTACAGGCCGACatcaaaacacaacaacaagAGCTGCACGACATTAAAGAGAAACTACAACTTGCTAATCTACAGATGTTACTTCAGCAGCCGATACAGGGAGAATTTGCCGGTTCTGGTCCTCAGCAGCAGGGTCCAGGCAGGCCGTCCCAACACAGCACCCAGCCCAAACCTCAACACTGTGTTTCACATTCATCGCACACACTACTCAGAGAACAGCCCAGTAGCTCATCTGCTCAGGGCCAGCAGAGACTGGTTCAGACTGGACACATGCAGGCCGTCAGCGTTCCAATGCAGACACACACCAGTCTCACCACACCCTTCTATAGCAACCCAATGATGTTCTCACCTAACCACGGACACCGAACCCAACATGACACACACTgccaaagacacacacacactgactacAGCCAGGACGGACAGCTACGGATGCTACTAAACCAACCAATGCAGACGCTTGTACCAGACAGCAATGGGGGGGCCCAGTCTTCCCAGTGCAGCTCAACTATTCAACAAAccaaATATCCTCTGGACCAGCAGATGATGGCTCCTTCCTTCCCTGTGCAGCAGGTGAACTGTAACGCTGTGCTTGTCCCTTCCCCCGTCTTCACCTCACCAATCATGATCCCACATAACAGTTTCATCACCCATCAGGCCACGCCCGCCTATACGCCTCACCCATCAGCCGCCCCACAAAGTTTACCACTACAACAAACTCAGCAGTTCTTTCAGATGCAGCCTCAGGGTCTGATTCACAGTGCTCCCACTCAGGCCTTATTCCACACCCCTAGCGTTCCGCAGCAAAGCACTGTGGGATACGTACAGccacaacagcagcagcaacagcatcATCACTCACAGTCCGGCAACCTGTCGGACTACAGAAACATGCTCCCACGGTAGCCCCGCCACCTGGGGGAAAAAGCCAAGAGATTGCTGGAAAAGCGCATTGAGCATTTAGCTCTGAAAGGCATGATGGGAAGGGACTCTCTCGGCTCAGGGGAAGGCTCGCTCCCGAGCCAAACCAAAATCGAGAAAGCCAAAGTCCCTCAAAGTTCCCATGACAGCAAATGATGGTGATAACGCCACAAGGCCCAAGGACTGTGCCTGGCCTGGACTGCACGCAGGGGATGCTGGGATACGTAGGAGGAGCCCGCAGGCGTGTGACCTGTCATGGAGACAGAGGTCACAGAGCAGTCAAGCAGGCGCTTTGATCGACACGTAAAGGACAGAAAGCCGTAGAGGGTTTTTGGTACTGTAATGTTACAGTTATCTAGActtttcaaaacacaaacatacaaaaataagacaaaatcaACAAATCAAGTAATGCCTTGACAGAGCGTAAACTCTTCTGCGTGTGTTCTGTCCTCAACCGCTACTAAAATAGTAACTAAAAGAGAAACCGCCCCaccaagaagaagaaaaatacatgAACTGATCATATTTCATGTGCGTGTGCTGATGAGAGGAGCTGGGCATAATTCAGCGAAGAcccaaatatatttgaaaaacatttggcTTCCTGTTATCATGTGCAGAGCAGGTTCGGCCCCCTCCTGTAGTTATGTTAACACTAACGTAAAGAAACTTGAATCACGCtgtatatttctaatatttaagaGCAAGTTCGCATTAGGGCAAACCTTCCTATTGCTCAGCTCAACTCAATCCCtgttactctttattttttgaTCCACTGTACTGTACCTAGGGTTTCTCCACATGTTGAGTTCCGAAATATCATATTTcagtactttttatttcattttacggTTATAAACCTAGCTCGTCAGGAGAAGCATGTTGGTTTCACTGATCAAACAGTTCTTTGAGTTTTCAGATGTGCATGTGGTCTGCCTGTTCATACAGAAATCTAAATTTGATTTGATGTCAATGTAAGCAGGACAGATGTGCTTCAATATTTAGTTTCAGTGTTACACAGGGATGAAGCTCTGTTTAATTTATGCTTCGTAGTAGAGGGACTGTGTTGATTGTTTTATGGTGGTGGGGCGCGAGTGGTGCAGCAGTTAAACTGCGAAAATgaagatgtaaaataaaacggTAATGCATGTGGAATGATTGAAGACAATCACAACGTCATGGCTGCAGAAATGGAAATGTTCTCATCTGCCTGTCACTTTGGGCAAAATGTTTGGCAAATACAACtcaaatattagtaaaaaaaaaaataccccattattattatttttttttttgtattattatttttgaggaATTGTTGTAGACATGGAAGTGTTTAGATGTTATGAAAAATCACAGACAAAAATCTGACAATCGGGGAAACTTCAAGCTTGCACTTTCCTCCATCCTGTCACGCATAGCACATTTAAAGGCTGGTGCtggttatattattttttttaaaactaagaCGATTCTGTTCAAGACAGTTTAGATCATGTGCCCTTCTGTATGTCGTGCAATGCAAATCGAAAAACAAGAATGTGTGTAATTTATACTTATCGAAGAGATTTCTGTTTTTCGTCAGGTATGTTTTCTTGTATTAGCAAGAAATGCTTCGTATTAGTAAAAGCCAACGTGCTGTTTGAATGAAAACCGAAAGTATTTTTGTACTAAAATCTCCTCGACATTCCTTCAGTCATGTGTAGAAAGCGTGAAACTCCCCGACTCTCTCAGGTGTGACATCTCCACGCAGGTGTCTAGCTTGTTAGTACGCTGTTGCTGGTCTAAGCCGGTTACTAGGTGGTCATTAGCTGCTCCAACCATCTGGGACCAGCAACAAACCAGACGGAGGAGCTATAAAACACCAACTTCAAAACGAGTAGGACAAATAAATCCAAAGGTTCTGACTTACGCCAGTTGCCACTGTGATGGCCATTTAGTGTGTGCATCGCCCCCTGAACAAAACGAGCTGTTTCATCCTTCATTTATTGCCCATTTGTGGtgttttcatgaaatattttgcCAGCTAGGCTCGAACATTTCGtctcaaatgtttcttgagttaAAGGTTTGATTGTTTTgcagatgtgtttgtgttcattgGGTTGTGAGTGGTAGATGGAAACTGTACCGACTCTCTCATCTTTGTTCTCTTTCTCTATGAAACTATGCTCTTGTGGAGACTGCACTTTATTCTTTATCCCTTCTTTAAGTCTTTTGCtttgtgctctctctctctctctctctctctctctctctcttttctctctggcCTAAATTTCACCCCAAAAGTGTCTGTTCTGATGAGGTTTTAGGCCTCATGGATTCGTGAGcgtgtgttttatgtgtgtgttgtgagtgTATGTGTTATCTGTGTTACCTGAACTGGTGACATCGtcaatgcatttatattctaCCAGGTGAGGGGAAGAGACAGAAAGTGACACCTGGTTTAAACAGCCATCTCTGCTGATACTCTGCAGAAAATACACGGAAGATATTGTAATATAAGATATACAGAAAATGTCTAGAAAAATatagttgtttattttataagatGTCAAATAGattgaaataaatttatatGCAGTGTATGATTTGAAAGTAAAAACAGAGGTATTTTGTAACAGATTAATTATTGAAGTGTCTTACTTTGGGGGGACGTAAAGCTTTCTGTTTGTCGGTTCAGCGAGTTGATGTTGCACAGTCAATGTATGGCTtgtttttcccccttttattCTTCTGTGTACATATACCATCACAACAAGCTTTAAcatattgttaatattgttttaaaagaaattaataataaaaaaaaagtttacattctGAAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0009648 photoperiodism biological_process
GO:0007623 circadian rhythm biological_process
GO:0007165 signal transduction biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004871 obsolete signal transducer activity molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K09026 NPAS2; neuronal PAS domain-containing protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52196 lncRNA downstream 196696 11304281 ~ 11330366 (-) False G35434
TU52195 lncRNA downstream 196696 11324745 ~ 11330366 (-) True G35434
TU52305 lncRNA downstream 214232 11311549 ~ 11312830 (-) True G35522
TU52216 lncRNA downstream 277056 11249199 ~ 11250006 (-) True G35450
TU52278 lncRNA downstream 306171 11219968 ~ 11220891 (-) True G35499
TU52399 lncRNA upstream 115910 11670957 ~ 11674817 (-) True G35592
TU52405 lncRNA upstream 137503 11692550 ~ 11694947 (-) True G35594
TU52415 lncRNA upstream 141144 11696191 ~ 11697674 (-) True G35597
TU52417 lncRNA upstream 142901 11697948 ~ 11699666 (-) True G35599
TU52418 lncRNA upstream 142901 11697948 ~ 11699511 (-) False G35599
XM_043238212.1 mRNA downstream 1025 11519575 ~ 11526037 (-) False radx
XM_043238210.1 mRNA downstream 1046 11519575 ~ 11526016 (-) False radx
XM_043238209.1 mRNA downstream 1049 11519575 ~ 11526013 (-) True radx
XM_043238211.1 mRNA downstream 1051 11519575 ~ 11526011 (-) False radx
XM_043238207.1 mRNA downstream 1053 11519575 ~ 11526009 (-) False radx
XM_043240918.1 mRNA upstream 25787 11580834 ~ 11582813 (-) True vma21
XM_043238595.1 mRNA upstream 28908 11583955 ~ 11599842 (-) True mtnr1c
XM_043239836.1 mRNA upstream 64063 11619110 ~ 11621440 (-) True tnfsf10l4
XM_043239473.1 mRNA upstream 95392 11650439 ~ 11652716 (-) True rpl36a
XM_043239992.1 mRNA upstream 127173 11682220 ~ 11689922 (-) True LOC122345659
TU52323 other downstream 59940 11419955 ~ 11467122 (-) False hmgn7
TU52322 other downstream 59940 11463831 ~ 11467122 (-) True hmgn7
TU52116 other downstream 600899 10923927 ~ 10926163 (-) True G35384
TU52098 other downstream 652998 10868364 ~ 10874064 (-) True G35371
TU51745 other downstream 1065353 10461208 ~ 10461709 (-) True G35122
TU52344 other upstream 28733 11583780 ~ 11652627 (-) True G35554
TU52507 other upstream 246267 11801314 ~ 11815810 (-) False msna
TU52701 other upstream 610363 12165410 ~ 12169327 (-) False sh2d1aa
TU52745 other upstream 762756 12317803 ~ 12319685 (-) True G35825
TU52956 other upstream 946867 12501914 ~ 12505958 (-) True G35936

Expression Profile