RNA id: XM_043238945.1


Basic Information

Item Value
RNA id XM_043238945.1
length 3579
RNA type mRNA
GC content 0.47
exon number 12
gene id LOC122345116
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 27593593 ~ 27604409 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTATTCTGCTGCCTCCCGCGCACACACGAGTCTCTAGAATTAGTGTCTGGTTACTCGCATAAACCGGGCAGGGCATCAAAGTGTGTAGTAAAAGATCGATGAGGACAAAGCCCAGAAGGCACGCGACCTTTGTCCAAATCTTGTTGTGCACATGGGCTACACCGTGTCTGGATCCTCGTTCACTGCACTTATCCAAAAGCAGTTAGGCTACTTAAACATGTATACCGGGGCTTTCTTTGCGTTTGTACTGTTGTGTGGAGCAGAAACCGGTCGTGCTGGCAAGGTTTTGGTGTTGCCAGGCGAGTACAGTCACTGGCACAACATGCGTGCGATCATCGACGAGCTAGTGGATCGTAACCACAGCGTGACGGTTCTGGTCAGTTCTTCATCACCTACTGTACCACACGCGCGGAAGGAGCGCTTCGATTACAAAGTGTTTCAAGTGAACACGAAGAAAGAAGAGGCCAGTGCCGCGTGGAGCGAGATCATTGACCTCTGGATGAATGAAACGGCCACCAAATACGATAGGGTCTTAATGTTGTGGAGAGTGATGTCCAAGTTCAAGACGTACGGCGATGAAGCCTGCAAGGGCATGTTTCGCGAGGATCTTTTACGCACGCTTCGTGAATCTCATTACGACGTGCTTCTGTCTGATCCGATGATGCCGTTCCCTGACCTGATGGCACAGAAGCTGAACATCCCTCACGTCCTCTCGATTCGCGCGATGATCGCGTATGAATTAGAGCGGCTTTGCGGTCAGATGCCCGCGCCTCCGTCCTACGTCCCTGCTGTCGCTTTGCATGACCACCTCACCGACCGTATGAGCTTCACTGAGAGAGTTGAAAACATGCTTCTCTACATCCTACATACGACTATATACCAACTGAGCATTAAGTTTACTTTTGATCAGCTCTACACTGAAATAGAGGGAAAGCCCACAACAATGTGTGAGACTATAGGTAAAGCAGACATCTGGTTGATCAGAACTTACTGGGATTTTGAGTATCCACGCCCACTCCTGcctaattttaaatttgttgGAGGACTTCACTGCAAACCTGCCAAGCCCCTGCCGAAGGAAATGGAGGAGTTTGTTCAGAGCTCAGGAGATCACGGCTTCGTTGTGTTCTCATTGGGTTCGATGATCGGCAACCTGACCATGGAAAGGGCAAACACTATTGCTTTGGCTCTTAGTCAGATTCCACAAAAGgTTGTTTGGCGGTATAGTGGGAAAACACCAGAAACTCTCGCCCCCAATACAAGAACCTATGACTGGATCCCACAGAATGATCTGCTTGGTCATCCAAAAACAAAGGCCTTCATCACCCATGGTGGGACAAATGGACTGTATGAGGCTATTTATCATGGTGTCCCAATGGTGGGTTTACCACTTTGGGGTGACCAGCCCAGTAACCTAATGAACATGAAAACCAAAGGAGCTGCTGTTGTTCTTGATTTCTACACAATGGAATCCCAAGACTTAGTGGGTGCTCTCAAGACTGTCTTAAATAATCCATTATACAAGGAGAGCATCATGAGACTGTCCAGAATCCATCATGATCAGCCAATGAAGCCTCTGGACCAGGCGGTTTACTGGATCGAGTTTGTGATGCGAAATAAAGGAGCTAAACATCTCCGAGTTCAGGCACATAATCTGAGCTGGTATCAGTACCACTGCCTGGATGTAGTGGCCTTCTTACTCTCACTTGTTGCACTGATCACATTCCTCTTCATGAAATCATGCTGTTTCcttttctgtaaatgtttcaGAAAGACTTGTCCTGATGGCAGAGCACAAAAGAGTAAAAAAGAATTGACAATGATTTTCGGAACTTTGCTTGCGTTTGTACTGTTGTGTGGAGCAGAAACCGGTCGTGCTGGCAAGGTTTTGGTGTTGCCAGGCGAGTACAGTCACTGGCACAACATGCGTGCGATCATCGACGAGCTAGTGGATCGTGACCACAGCATGACGGTTCTGGTCAGTTCTTCATCACCTACTGTACCACACGCGCGGAAGGAGCGCTTCGATTACAAAGTGTTTCAAGTGAACATGAAGAAAGAAGAGGCAAATGCTGTGCTGAGAGATATGATTCATCTCGGGACGAATGACACAGCCGCCAAATACAAGGGGGACTTTATGGTCTGGCGAGTGATTTCCAACTATATGACGTTTCTTGCCGATATAGCCAAGGGCATGTTTCGCGAGGATCTTTTACGCACGCTTCGTGAATCTCATTACGACGTGCTTCTGTCTGATCCGATGATGCCGTTCCCTGACCTGATGGCACAGAAGCTGAACATCCCTCACGTCCTCTCGATTCGCGCGACGTTCGCGTATACATTAGAGCGGCTTTGCGGTCAGATGCCCGCGCCTCCGTCCTACGTCCCTGCTGTCGCTTTGCGAGATTACCTCACCGACCGTATGAGCTTCACAGAGAGAGTTGAAAACATGCTTCTCTACATCCTACATACGACTATATTTCCATTGAGCATGACGTTTACTTTAGATCAGCTCTACACTGAAATATTGGGAAAACCCACAACCGCATGTGAAACCATTGGAAAAACTGATATTGTGTTGATCAGAACTTACTGGGATTTTGAGTATCCACGCCCACTGCTGcctaattttaaatttgttgGAGGACTTCACTGCAAACCTGCCAAGCCCCTGTCAGAGGAAATGGAGGAGTTTGTTCAGAGCTCAGGAGATCACGGCTTCGTTGTGTTCTCATTGGGTTCGATGCTTGGCAACCTGACCATGGAAAGGGCAAACACTGTTGCTTCTGCTCTTGGCCAGATCCCACAAAAGgTTGTTTGGCGTTATCATGGGAAAACACCAGAAACTCTCGCCCCCAATACAAGAATCTATGACTGGATCCCACAGAATGATCTGCTTGGTCATCCAAAAACAAAGGCCTTCATCACCCATGGTGGGACAAATGGACTGTATGAGGCTATTTATCATGGTGTCCCAATGGTGGGTTTACCACTTTGGGGTGACCAGCCTGATAACCTAATGCACATGAAAACCAAAGGAGCTGCTGTTGTTCTTGATATCGGCACAATGCAGTCCAAAGACATGGTGGATGCTCTCAAGACTGTCATAAATATTCCATCGTTCAAGGAGAGCATCATGAGACTGTCCAGAATCCATCATGATCAGCCAATGAAGCCTCTGGACCAGGCGGTTTACTGGATCGAGTTTGTGATGCGGCATAAAGGAGCTAAACATCTCCGAGTTCAGGCACATAATCTGAGCTGGTATCAGTACCACTGCCTGGATGTAGTGGCCTTCTTACTCTCACTTGTTGCACTGATCACATTCCTCTTCATGAAATCATGCTGTTTCcttttctgtaaatgtttcaGAAAGACCTGTCCTGATGGCAGAGCACAAAAGAGTAAAAAAGAGTGAATGTGAAGTGGGTTGCCATTGCTTCAGTTGACTGTGGTACTTGTCATTATCACTTGTAAGAtggccagtgtgtgtgttttgagtacATTCCGAACTGTATGTCCTTGATGAAGTACatgtgaatgtaaaataaaatagaaaagtcaCTCAGGGTAAAAATA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016758 transferase activity, transferring hexosyl groups molecular_function

KEGG:

id description
K00699 UGT; glucuronosyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59121 lncRNA downstream 54266 27538940 ~ 27539327 (-) True G39936
TU59120 lncRNA downstream 54732 27538488 ~ 27538861 (-) True G39935
TU59046 lncRNA downstream 307399 27285182 ~ 27286194 (-) True G39893
TU59040 lncRNA downstream 326364 27265289 ~ 27267229 (-) True G39888
TU59023 lncRNA downstream 359431 27232658 ~ 27234162 (-) True G39872
TU59154 lncRNA upstream 46041 27650450 ~ 27650827 (-) True G39951
TU59171 lncRNA upstream 144051 27748460 ~ 27789829 (-) True G39964
TU59253 lncRNA upstream 291234 27895643 ~ 27895961 (-) True G40021
TU59307 lncRNA upstream 575799 28180208 ~ 28180575 (-) True G40057
TU59308 lncRNA upstream 576215 28180624 ~ 28180999 (-) True G40058
XM_043240875.1 mRNA downstream 3683 27575738 ~ 27589910 (-) False ythdc1
XM_043240874.1 mRNA downstream 3684 27575738 ~ 27589909 (-) False ythdc1
XM_043240872.1 mRNA downstream 3684 27575738 ~ 27589909 (-) True ythdc1
XM_043240873.1 mRNA downstream 3685 27575738 ~ 27589908 (-) False ythdc1
XM_043240876.1 mRNA downstream 3685 27575738 ~ 27589908 (-) False ythdc1
XM_043240880.1 mRNA upstream 1403 27605812 ~ 27615456 (-) False LOC122346185
XM_043240878.1 mRNA upstream 1403 27605812 ~ 27615374 (-) False LOC122346185
XM_043240879.1 mRNA upstream 1403 27605812 ~ 27610307 (-) True LOC122346185
XM_043238492.1 mRNA upstream 281632 27886041 ~ 27891340 (-) False LOC122344874
XM_043238482.1 mRNA upstream 305818 27910227 ~ 27914589 (-) False LOC122344872
TU59072 other downstream 194873 27382921 ~ 27398720 (-) True isca1
unassigned_transcript_1081 other downstream 1482191 26111332 ~ 26111402 (-) True trnag-gcc_64
unassigned_transcript_1080 other downstream 1484023 26109500 ~ 26109570 (-) True trnag-gcc_63
unassigned_transcript_1079 other downstream 1492184 26101339 ~ 26101409 (-) True trnag-gcc_62
unassigned_transcript_1078 other downstream 1501597 26091926 ~ 26091996 (-) True trnag-gcc_61
TU59237 other upstream 284714 27889123 ~ 27895454 (-) True LOC122344874
TU59335 other upstream 651419 28255828 ~ 28264704 (-) True G40080
TU59455 other upstream 1856176 29460585 ~ 29490204 (-) True G40182
XR_006251000.1 other upstream 2012590 29616999 ~ 29655061 (-) False eng
TU59650 other upstream 2321976 29926385 ~ 29926833 (-) False LOC122344966

Expression Profile