RNA id: XM_043238956.1


Basic Information

Item Value
RNA id XM_043238956.1
length 4007
RNA type mRNA
GC content 0.55
exon number 21
gene id mcc
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 30978593 ~ 31052589 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGGCACTGATGGACGGAGAAAAAAGTAAACCAGTGAAGACGAGCAGGCAGTGTCGCGTGAAGCGCCGTGAAGCGGTGAGTTCGGCGGGGGTTCATGAtggcggcggcggcggaggGAGCGGCAGCAGCGGCAGCAGCGACTCGTGCAGCACCGCGGAGGAGGAGCGCGTCCGGCGGCTCTTCCAGACCTGCGACGGGGACGGGGACGGATACATTAACCGGAACGACCTGCTGATGGTCTGCCGGCAGCTGAACATGGAGGACTCGGTGGCGGAGATCATGGGGCAGCTGGGCGCAGACGAGCGAGGGAGGATCTCCTTCGAGGACTTCACGCGCTGCCGCATGCAGCTGCTCAACGAGATCCGCAAAGAGGAAGGACAGCTCTCGCTGCTCTCCAGCGACTCGGGGAGGAGGAACGCTCACGGGTGTGTGGCCTCGTGGCCCACCAGCAGCGACAACAGCCTCGGCGCCCGAGAGAGCTGGGAGTTTGATTCTGGAGCTCGAGACTTACAGAGTCCAGAGTCTCTCACGCAAAGCCATGCTCCGCCGCTCCAGAACATCCTGGATCCTCCGGCCGGGAATCCCTCCGGCTACCTGGAGCTGGCCAACACTctgcaTCTGGCTGCGCTGGCGTCTCTGAAGGGTGACGTGGTGGAGCTCAACCAGCGACTGCTgcagaccgagagagagagagacacgctGGAGAAGAGACTGGCCAAAGCACAgtgtgagCAGTCTCATCTGCTGCGGGAGCACGAGGAGGTTCAGGAGAGGACGACTCTGCGTTACGAAGAGCGGATCACAGAACTGCACAGCATCATCGCTGAACTCAACAAGAAGATAGACCTGCTGCAGGGAGCCACCATCagggAGGAGGATGAGTTTTCCGAGCTTCGCTCCGATCTCAGTCACAGCCAGCTGGAAGTTAACGAGGATGACCGGAGCATCGATCAGGACCCCGACCAGGCGTCCATCTCGCTGCCTGAGAACCAGTCCACGCTGGTCACTGCAGACATGGATAACTGCAGTGACCTGAACTCGGAGCTGCAGCGGGTTTTGACCGGGCTGGAGAGCGTCCTCTGCGGCCGCAAGAAGAGCACGTGCAGCCTGTCCGTGGCCGAGGTGGACCGACACATCGAGCAGCTGACCACCGCCAGCGAACACTGCGACCTGGCCATCAAGGTCAAACACCCGACAGACGCAGTACACACCTTCATGTGGATCGCGCTCTGGGCTGATCTGGATTGGTTCTACCCCAGTCTGTGTGAGGAGCGTGTGCGCTGGGAGAAGGAGCTGGCCGGCCTGCGGGAGGAGAACGAGAGTCTAACGGCCATGCTGTGCAGCAAAGAAGAGGACCTCAACCGCACCAAAGCCACCATGAACGGCATCCGAGAGGAGCGAGACCGTCTGCGCAGACGCgtacGAGAGCTGCAGACACGCCTCCAGAGCGTTCAGCCTGGCGCTCCGTCCAGTCCTGGGCGTCTGACTCCGGCGGGGCGTCCCATCAACCCCAGCACCGGAGAACTcagcaccagcagcagcagcaacgaCATCCCCGTCGCCAAAgtgGCGGAGCGAGTGAAGCTGTCGAAAACACGCTCCGAATCGCTGCCAGCAGAGAGATCGGTCCTCGGATCTGAAATCAGCAGCATCGGGgTGTCCAGTAACGTGGCTGAACATCTGGCTCATTCCCTTCAGGACTGCTCCAACATCCAGGAGATCTTCCAGACGCTCTACTCACACGGATCCGCCATCTCCGAGAGCAAGATCCGTGAGTtcgaggtggagacggagagacTCAACAGtcGCATCGAGCACCTGAAGTCTCAGAACGATCTGCTGACCATCACACTGGAGGAGTGTAAGAGCAACGCCGAGCGTATGAGCATGCTGGTGGGGAAATATGAGTCCAACGCCACCGCACTCAGACTGGCCCTGCAgtacagtgaGCAGTGTATTGAGGCGTATGAGCTGCTGCTGGCGCTGGCTGAGAGTGAACAGGGTCTGGTTTTGGGTCAGTTCAGAGCCGCTGGAGTCAGTGCAGTggGAGAGCAGGCGGGTGAGGAGAGCATCTCTCAGATCCTGAAGAAAGCTCACGACAGCAGGAAGACGGCGGAGATCGCCGCTAAAGATCTCCTGACTCGTCTGGACGGCAGCTGCGGAGCGGCGTTTGCGGTCAGCGTCCAGCCCTGGGAGAGCCTCTCGTCCAACAGCCACACCAGCACCACCAGCTCGACGGCCAGCAGCTGTGACACGGACTTCTCTAAAGACGACGAGCAGCGTCTGAAGGACTACGTGCAGCAGCTGAAGAACGACCGGGCGGCCGTCAAACTGACCATGCTGGAGCTGGAGAGCGTCCACATCGACCCGCTGAGCTACGACGTCAAACCCCGAGGAGACTCGCAGAGACTGGACCTGGAGAACGCCGTGCTCATGCAGGAGCTCATGGCCATGAAGgaggAGATGGCGGAGCTGAAGGCTCAGCTGTATTTgctggagaaggagaagaaagcTCTGGAGCTGAAGCTGAGCACGAGGGAGGCTCAGGAGCAGGCGTATCTGGTGCACATCGAGCATCTGAAGTCTGAGGTGGAGGAGCATCAGGAGCAGAGACGCCGGTCACTCACCTCCACCTGCAGCAGTGCTGGAGCCAAAGACAAGAGCGTCAAGgaCTCTGATTCCCCGGCGATCAGTCTCTCTGACCTGAGGAGTCTGAACGACAGCGACCTCGCGGCGGAGCTCACCAGCGCCCTCAGGAGAGAGAAGAAGCTGAAGGGTCGTGTTCAGGAGCTGGTGGCAGCGTTAGAAAGGCTGACTAAAAGCAGTGAGGTCAGACATCAGCAGTCGGCGGAGTTCGTGAACGACCTGAAACGAGCAAACAGTAATCTGGTGGCGGCGTACGAGAAAGCCAAGAAGAAGCACCAGAACAAGCTGAAGAAGCTGGAGTCTCAGATGATGGCGATGGTGGAGCGTCACGAGACGCAGGTGAGGATGCTGAAGCAGCGCAACGCTCTCCTGGAGGAGGAGACGTCTCGACCGCACGCCAACGAAACCTCGCTCTGAGCCTCGGCCGGGACAGGCGTCTTTTATACCGCTACGTTTTTCCAATTTCTAAGTATGGGGTTCACCGTTTCTACGCTCTTACCGGTCAGGCAGCGGCACAGACTTAAAGAGACGAACTGTTATATTTCATAATCGTACAGCGTAGAGAAATAGAGTTCTGAGCAATAAATGAGAAGGAGGTTTCCTTCGTCTGCTGGTTAAACTCACATCCTCCGTTGAACCGCCTCACAGGACTAGTTAAGACTCCGACCAGCATCCTGTCATCAGGCTCCAAACATCATCCAGAGTCAGACAGATGACCGACGAATCAGGGCCGATTATTCTGAACTAAGAACAATAGATTTATTCATCTATGCTcacattagttaataaaaatacgaCTTTGGTTTTATAATATTGCTGAATCTTTATTTTAACTGAGATTTCTAAATCCCGTATGAAAAAAGTTATAGTAAATACTGGAGAACCATATTTTAGTGAAGTGTTTTAGGACTAAAAAACCTGAATTAATTTGTTTGCAGTAATTCTATAATTGCTGTGGTATTATAACAACTGtagtaatataaacaaatgactCATTAACTAATTACCCAGTACTGTACTAGTACTGTTATACTGCAGCACTAAAAGATACTCCAGGATTTATTCATCATTTGACTGGAGATAATActacagtgttgtaaatactctcatatatatctatatctagaGCATGGTTCAGACACACTagtatttactgtcatttattaCATGGCTTTCTCTTGTGGGAAGTAACAAATGAAACGTTAATTGTAAAGCGTTACCCATTTATCATCGAAATCTGGGCCGTTTTTATTAAGTTGAGGTGTTTTGAATGAACCGTTGAGTTAATCGCAGTTAAGACTTGAAGAAAAGATTTCTTTCCTTAGAATAACATGCTCTGATCTGAAACTTAATGTAGCGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60379 lncRNA downstream 271 30977609 ~ 30978322 (-) True G40782
XR_006250922.1 lncRNA downstream 3710 30974318 ~ 30974883 (-) True LOC122344702
XR_006250921.1 lncRNA downstream 15086 30959444 ~ 30963507 (-) True LOC122344701
TU60350 lncRNA downstream 53396 30920851 ~ 30925197 (-) False G40760
TU60352 lncRNA downstream 53396 30920851 ~ 30925197 (-) True G40760
TU60399 lncRNA upstream 35603 31088192 ~ 31094923 (-) True G40798
TU60429 lncRNA upstream 168228 31220817 ~ 31222194 (-) True LOC122344940
XR_006250951.1 lncRNA upstream 168295 31220884 ~ 31222257 (-) False LOC122344940
TU60455 lncRNA upstream 220097 31272686 ~ 31273001 (-) True G40841
TU60456 lncRNA upstream 227588 31280177 ~ 31280431 (-) True G40842
XM_043238243.1 mRNA downstream 27105 30942514 ~ 30951488 (-) True cux2a
XM_043238238.1 mRNA downstream 36711 30920817 ~ 30941882 (-) True LOC122344688
XM_043238521.1 mRNA downstream 142859 30831189 ~ 30835734 (-) True rabepk
XM_043238534.1 mRNA downstream 208686 30765631 ~ 30769907 (-) True LOC122344907
XM_043240567.1 mRNA downstream 223653 30734104 ~ 30754940 (-) False golga2
XM_043238245.1 mRNA upstream 1335 31053924 ~ 31064355 (-) True rcl1
XM_043238241.1 mRNA upstream 21454 31074043 ~ 31081265 (-) True LOC122344691
XM_043238248.1 mRNA upstream 56134 31108723 ~ 31112733 (-) True rplp0
XM_043238526.1 mRNA upstream 89988 31142577 ~ 31155113 (-) True gusb
XM_043238527.1 mRNA upstream 89988 31142577 ~ 31154983 (-) False gusb
TU60335 other downstream 152235 30819515 ~ 30826358 (-) True G40752
TU60340 other downstream 152235 30819515 ~ 30826358 (-) False G40752
TU60266 other downstream 185874 30789633 ~ 30792719 (-) True G40713
TU60256 other downstream 281905 30631028 ~ 30696688 (-) False G40711
XR_006251005.1 other upstream 649864 31702453 ~ 31711737 (-) True apooa
TU60769 other upstream 668681 31721270 ~ 31722906 (-) True G41035
XR_006251008.1 other upstream 1069695 32122284 ~ 32173823 (-) False tnca
XR_006251085.1 other upstream 1161687 32214276 ~ 32293782 (-) False LOC122346090
XR_006251086.1 other upstream 1161703 32214292 ~ 32293782 (-) False LOC122346090

Expression Profile