RNA id: XM_043238959.1


Basic Information

Item Value
RNA id XM_043238959.1
length 3954
RNA type mRNA
GC content 0.51
exon number 11
gene id LOC122345133
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 5435977 ~ 5454756 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aaagggacagaATAATTTCATGGGCGAGGGCTTTGGACCGAGAGCCAAGCAGAAAATAGCAAAGGCCCGTTGGCAGAGGTGCCTGTAGGACGCGGAAAGGAGAAGAAAGGCAATCCGAACAGCTCTGTCGACATTCACAAAGCAGGACTCGGTGTCCTCGTCGGTCAGATATATCTTATATCGTCGCGCTGTGGGATTTCAACGCGGATAGTTTGACGTCGATTAACAGTGGAGATCTGGAGATCCCGTCTGCTGTCTGAAATAGGATCAAACTCTTCCTCCAGCTATGATGGGAATGTTAGTTTGCTGACTGCTGCAGCTCTTGTCATTGTCATCGTTATACGTGTTTGCTGTGGGGGAGGAACTTAAAGAACGGCCTGCACTCCCTCATTCCATGCAAGTAACCTTTCAACTCCTCGCGGTCTTGAAGCAACAACAAGCGCGACTCTAGAGCTCCGACGGAGAGGACGGAGGAacagaggaggaggaaaggGCAGGAGTTCTTAGAGAGGTTGTGTCTCTGGAATGCCTGGCTCAGGATGCAGCCGCTGAGCAGTCCACTCCTTTCAGGAGCCAAGGGGAGGCGTGATTGGCCGCCGGCCTTATCTGGGTGGAGCTGTAGGAGGGATATTACTTATTCATTGGCACATTCTGCAAGGCCCCTCCCACCTCACTGACGCTCTGCCCTTGgCCCCTGTAAGCTGCCTGTGTATCTGGGAATGCTGTTGTTGCATCAGAGGGGCAGTGTTGGAGATGGCCGAACTCAGGGGCTAAGGTCAGGGTCAGGATTCAAGGGTCAACACATCTCAGAAGCTGCAGGGGTAGATGTGGAAGGACCTGAAGCCAAACTGCAGGCACCACCAGGCATAAGCTGTATGCACCGTGGAAACCAGCTTGTCCTAACGCCACCCCTGGAAACTAAAGCCTTTCATCTATGAGACGGGAAGCTTACTTTCACTTCCACAGCCTTGTTGCACTTGTTCAGACATTCTAGAACTCTCTGGAGCTAGTGTCTTTATTATTCAACACTGCACAACTTCCCCTGAAACAATCACCCAGCACAAACAAAGTCACTATGCGTCACATCCACGTGGAACTGGCTCGTAAAGAGCCGGCCGTTGAGCTTCCAGCCCAGGACGGGGATCTACCTCTGCCTAGCACTCGGAGCGAGAGCCCTGAATCTGAAGTACGGCGAGTCGTTCCCAGACCTTTCGGAGAAGAAGAGATCAGGCTACAGAAGGTCTACCAGCTATCCATCCTCTCCCAAAGAGGTGGTTTCGGGGAAAGTCAAGAGACTCTTCGGCCTGTCCGAGTAGGTATGAAACGTAGCCTGGAGGGGACGCCGGTCCCTGTCGCCCATAAGCGTCTTTTCCAACAGGACGGGGATGACGACGACGATGAGTCCGATGGGGAGGTGTTGTGTGGCTCTGGGGTGGAACCACTTTTTTCCAGCTCGCTCCTTGAGCACAGAGACTCAGAAATCCCTAAGTCGCCTCCCCTTTCCCCTTCACATCCACCGATTCCTGGTCGACGGCCAGCCCAGCACAACCACGACAGGCCCATCCCGGATGCCTTCGCCCCCCTGTCCCCAAAATCTCCTCCTATGGTGGACCCACAGGGCCCTCACTCCACCTGGGGCCACTGCGAGGGAAGCCCTCCCACTCTGACTCCCAGAACCGAGGCCTCCACAGCAAGAAACATCTCAGCTGGCTGCAACGATGAGACAAGGGATGAAGGCCATAACTCTGTCGACGTCAAGGGCATGTTGTGCGCCACAGAGAGCAGTTGGGCACCTGTCCCGTTTTCAACACCAGCTGAAGCTGTCGAATGGGGGGCGACTTTCGAATCTTCTCCTCCACCAGCAGAGATGAagacctcctcctcctcctctaaTGGACTGAGCTCTCTTGAGAAAACACCAGTGGAAGCGAATGGCCTGGTATCAGGAGCATCCAATTCCTGTCCAGCGAAGAAAAGACTTCTCTCCTCCAGCGATACAGGAGAGTCCTGCTCGGAGGATGAGGGTCCATCTACATCAAAGCGTAGTCGGCTGGCGCTGTTGGCACCGGGGCTCGGATTAGCATCCTGCCGCAGCACTGATGCCAAGGGTGCGCCCTTCTGGAACCATCTACTGCCCTCAGCAAGGGAGCTTACCAAGactgcTACAGACTGTTCACGATCAGGGAGAAGGCTCAAAGTGGGGAGTCGACTCAAATCtcGACAGTTACGCAGTGGACGCCGAACAGACACCAGTCGCTCCTGTAGTTCAATCTCCTCTTTATCCTCCATTAGCAGACCTCTTCTTGGCAACTTTGAGGAGTCGATTCTGAAGGGTCGTTTTACTCCATCTGGGCGGATAGAGGGCTTCACAGCAGAGATCGGGGCTAGCGGCTCCTATTGCCCGCAGCATGCCACCTTACCTGTGCAAGTGACTTATTATGACACCTCAGAGCACAGCGCCCCTTCTCCCTTCCTGGGGGTGATCTTGCTAGAACCACTTGGAAAAAAAGGATACAGCGTACCCAAAGCAGGGACCATTCAAGTGACCTTATTTAACCCCAATAAGACTgtggttaaaatgtttttggtgaCATATAATTTTGGGGACATGCCTGTCAATCACATGACCTTCTTGCGCCATCGTATCTTCCTGGTCCCTGTGGATGAGGCGGAGGGGTCAGGGGAGGGGCAGGAGGGCTCAACGTCTGACAGGAAGAAGATTCTCTGTTACTTGATACACCTCAGATTCCAGAGTTCCAAATCTGGGAAAATCTACTTGCACAATGATATCCGGCTGCTATTCTCCCGCAAGTCCATCGAGGTGGACACTGGGATTCCTTACGAGCTGAAATCTTTCACCGAGGTGCCAAGAAACCCCAAATACTCCCCCAGAGTGTGAGATCGGGACGCCCTGCAGCAGTGGGGCAGAAGGACTGCGTTAATAAAGACCCCATACACTTGAACACAGACACACTTGCACTCATACATGCATACGCAGACAGatgtatgtacatacacacCGATATCACACCCTCTCGAGGGCCAGCTCTAGAACTGAGTGTGTAACATGCATGCCTTGTGACTTCATTGAGTTTTCCTCTAGTGCCGTTAAACAGTTTTGCCCTTCACTCTGCCTGCACCTGACCATTGTGGACCAGTTGTAACCGTGCCCACCAACCCGCTCTATTCTAAAAAGTTGGTGACCATCAGTACATACGGACTCCCTCGATCAAAGAGGACTGAGTGGATGTGCAAAGAGGTGGTGAATGAGACCGACGGGAATGTATGGAGGCAAAgcaaatggggaaaaaagagacTTCTGAGCACCAGATTGGAGTTTCGACAATGGACACCACCTGTAACTCGCCTATTGAAGGGAATGAGAAAGTTCTAGAAATAAGAGACTGAAAAAGTACATCCATTCAGTGTCGGCATTGCGTTAAAGAGCAAAGCGTGGGTCGTAAAGAGGAGAGTAGCTCATTATTTtggacattttctctttttggaCGGGCAGTTTGGAGGACATTGCTGTTCCAACTTCTTCTAAACAGTACAACATCGGAGCAGAAAACAAACTGTAGTATTTATGTTCgcaaatgtcttaaaaaaaaaaaagaaaaaaaaagcaatatgctGCACAACTAGagtgatttaatttttattttattttttttgtggaggTAGTAGGTGCCCTCTCTGTTAGGATGGAGGGAAAAGATTGCCAAGTGAGTGATGGAGGGAGGGGAAAAAGGAGGGAACGGGAGGGAATCCGGGGTatttaaaatcagaaaatgttgtttatgtatattttaaaaatcgaTTAAACTCTGCGACTTGCGGGTGAAACGAGCGTTTGATCGTAATTTGCCAAGGGATACTTGAGAAGCAATGCCAAGGTTTGCTCCTGTATGTTTTGTGTATGATCAATAAAATATGTTCACTTACGACATCGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251035.1 lncRNA downstream 266728 5142578 ~ 5169249 (-) False LOC122345808
XR_006251034.1 lncRNA downstream 266728 5142578 ~ 5169249 (-) True LOC122345808
XR_006251036.1 lncRNA downstream 266728 5146350 ~ 5169249 (-) False LOC122345808
TU49076 lncRNA downstream 359943 5075761 ~ 5076034 (-) True G33334
TU49075 lncRNA downstream 382074 5034111 ~ 5053903 (-) True G33333
XR_006250957.1 lncRNA upstream 119408 5574164 ~ 5597629 (-) True LOC122344984
TU49160 lncRNA upstream 127387 5582143 ~ 5584600 (-) False LOC122344984
TU49165 lncRNA upstream 133289 5588045 ~ 5589905 (-) False LOC122344983
TU49166 lncRNA upstream 133289 5588045 ~ 5595174 (-) True LOC122344983
XR_006250956.1 lncRNA upstream 134171 5588927 ~ 5595020 (-) False LOC122344983
XM_043238965.1 mRNA downstream 846 5430566 ~ 5435131 (-) True ranbp1
XM_043239633.1 mRNA downstream 6509 5412669 ~ 5429468 (-) False golga3
XM_043239632.1 mRNA downstream 6509 5412669 ~ 5429468 (-) True golga3
XM_043238769.1 mRNA downstream 25483 5398894 ~ 5410494 (-) True ankle2
XM_043238672.1 mRNA upstream 166313 5621069 ~ 5629286 (-) True foxn4
XM_043238673.1 mRNA upstream 193499 5648255 ~ 5653029 (-) True kctd10
XM_043238430.1 mRNA upstream 214037 5668793 ~ 5671129 (-) True mmab
XM_043239673.1 mRNA upstream 365596 5820352 ~ 5842997 (-) False trpv4
XM_043239672.1 mRNA upstream 365596 5820352 ~ 5842995 (-) True trpv4
XR_006251120.1 other downstream 4583 5431264 ~ 5431394 (-) True LOC122346225
TU48850 other downstream 812919 4622490 ~ 4623058 (-) True G33175
TU48820 other downstream 1242896 4144927 ~ 4193081 (-) True LOC122346168
unassigned_transcript_954 other upstream 501543 5956299 ~ 5956371 (-) True trnak-uuu_104
TU49743 other upstream 1369415 6824171 ~ 6826182 (-) True G33758
XR_006251011.1 other upstream 1468674 6923430 ~ 6943192 (-) True usp20
XR_006251012.1 other upstream 1476116 6930872 ~ 6943203 (-) False usp20
XR_006251117.1 other upstream 1666966 7121722 ~ 7121849 (-) True LOC122346221

Expression Profile