RNA id: XM_043238966.1


Basic Information

Item Value
RNA id XM_043238966.1
length 5545
RNA type mRNA
GC content 0.50
exon number 28
gene id lamc3
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 6282774 ~ 6343615 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGTATGAAGCGTGTGTCCTGGGATTCAAAGGGGAAACACATGCTGACAGAAAAGGGGAAAGAAAGCATTGAGGACAAAGACTGAGCATGGaggaatatttcattttctttaaacctTTTCTTTCTTAACTGAATGCATGCGTGCATGCAACTCGATTGAAACCTTATTGCTGCATGCCAACTCAGAGAACAGTTcctgcgtaaaaaaaaaaaaatgtatctatctgcatgtgtgtttgcTATATCACATACTTTATTATGCTTGCCTTTGAACGCTGAACTGCTGAACTTCCCTTGAAGTTTTTCCCTGTAGCAAGTGGCTCTGATTTTGATTATTTGCTAGACTTGTTTTCGTTCGCTCGGCTCCTTTGAAGTTGTCTCTGTTTTAGGCTGTTGCATAGAAGGATGGATTCCTCTACACTTCACTCtcttttatttctgcttttcacCTTCTTCTCTCATGCTATCGCTGGAATGGACTCTTGCTACGATGAGAAGGGCGTCCCGAGCCGCTGTTTGCCTAAATTTGAAAATGCGGCCTTCAATCGCACAGTGATCGTTTCAAATGTTTACGGTATCCCACCTGAGGACTACTGCATGCAAACAGGGTCCACACGGTCATGTCACTTCTGTGATGCCATGGACTTGGAACTGAATCACAACGCTACTTACCTGACAGACTTCCACACAGATGAAGAGCCCACCTGGTGGCAGAGCCAGTCCATGTTCTATGGAGTTCAGTATCCTACTTCAGTCAACATCACACTGCATCTTGGCAAGGCCTTTGAGATCACATATGTCCGTTTGAAGTTCTACACCAGCCGACCAGAGAGCTTCGCCATCTTTAAGCGCACCGATGAGAACGGACCATGGCAACCGTACCAATACTACAGTGCTTCCTGTCACAAGATGTACAGGAGGCACAATAAGGGCTTCATACGTCCAGGAGAGAACGAAAGGACGGCACTCTGCACGGATGAATTTAGTGACATCTCACCTCTAACCGGCGGAAATGTGGCCTTCTCCACATTGGAGGGACGACCCAGTGCCTACAACTACGACCAGAGTCCTGTGTTACAGGACTGGGTGACAGCTACTGATATCCTCATCTCTCTGGACAGACTGAACACTTTTGGAGACGAGTTCTTCAAAGATCCCAAAGTGCTTCGTTCATATTTTTATGCCATATCCGATTTCTCCGTGGGGGGCagGTGCAAGTGTAATGGCCATGCCACTGACTGCTTCACCAATGAGGAGGGGCGTTTGGTGTGTGCTTGTGAGCACAACACCGCAGGGGTGGACTGTCAGCACTGTGCCCCCTTCTACCAGGACCGGCCGTGGACACGGGCCACCGCCGATTCAGCCAAccagtgtgtgaGGTGTAACTGCAGCGGTCTTGCTGATGAATGCGTGTTTGATGCTGAGCAGTACCGCAGCACAGGAAGTGGGGGGCACTGTGTCGGCTGCAGGGAAAACACAGCTGGCCCTCACTGTGAGAGATGCAGGGAGAACTTCTTCAGATCCTTAGCCGAGCGGACATGCCAAAACTGTAACTGTAATGCAATGGGCTCTGTGAGTTTGCAGTGTGATGCAGAGGGAGTGTGTATGTGCTGGCCAGGTGTGTCTGGTGTGAAGTGTGACATTTGCAAGTCCGGTTTCCATTCTCTCGGCCCTGGCGGATGCAGGTTGTGTGAGTGTGATAACAGGGGCAGTTTAGGAGTGTGTTCAGTCGAAGACGGACGCTGCCATTGCAAGACTAATGTGGAGGGTCAGTCCTGCAACAGGTGTAAACCAGGCTCTTTCAACCTCCAACTGGGAAACCCAGATGGctgtaaaaaatgcttttgctttGGACACTCCCTCGCCTGTTCGTCCTCCAATCAGTACATGGCGATTAATATTACTTCAGACTTCCTAGAAGATCCAGATGGCTGGAAGGGTGTGTTCACTACAGGGCAAGAACAATCTCTCATCTGGAAGGAGGGAGAAGTCTATCTGTTGCCCTACAGAGAGGAGAATGGCTTCTACAGAGCACCTGATAAGTACCTGGGGAACAGGTTGCTAAGTTACGGACGGACCCTTAGCGTGTCATTTACAGCTGAGCTGGAGGAACTCTTGCCCAGAAGTGTGACTGTGATGCTTGAGGGCTCCGGAGTATCTGTTACTGCTGATTTGTACTCACAACAGGAGACTTATTCCTCATTGGAGAAGATGCCCATCAACACCTTCACTCTCAGGTTAACAGAGAAGAACGTAAATCCATCTGTTGCCCCATTTGAGTTTCTCCGAATGCTTTACAATCTAACTGCACTACGTATCAGCAATGCAGGCGGCCAGAACTACACCTCCCAGCTCTCCAGGGTTAGCCTTGAATCTGCAGTCCGCACAAACTACAATACGGCTCCGCATGTTTGGTGGGTGGAGGAGTGCACTTGTCCTGTAGGATTCACTGGGCAGTTCTGTGAACACTGCGCTCCTGGATTCACCAGAGAAACCCCTAACGGCGGACCCTTCTCCCATTGTGTACCTTGCAGCTGCAATCAACATGGGACCTGCCATCCTGAGACAGGTGTATGTGACTGCAGAGATTTCACCACAGGTCATTATTGTGAGCTTTGCGAAGATGGTTACTATGGCAATGCGCTGACTGGCAGCCCAGGCGACTGCTTACCTTGTCCTTGTCCAGATCACACCACCTGTGCCCAGGTGCCAGAGACAGGGGATGTGGTTTGTACCAACTGTCCAACAGCCCAAAGGGGTGTACGGTGTGAATTATGTGAAGATGGTTTCTATGGCAACCCTCTGGGCTGGGGAGGCAAAGTGCAACCGTGTTTGAGGTGCGAGTGTAATGGGAACGTGGATCCCAATGCAGTTGGTGTGTGTGATCACATGACTGGACGCTGTCTGAAATGCCTGGGACATACGACCGGGGACCATTGTGAAAAATGCAGATCGGGTTACTACGGCAACGCTTTGGCCAATGAGCTCAATCCAGAGCGAAAGTGCAAACCTTGCGCCTGTAACGTGGCTGGGACATCGGGATCGCCGAACGACTGCCACCCGGATACAGGAAAATGTGTATGCCTGAGTCACGTGACAGGGAGAGACTGTGGACGGTGTGAAACCGGCTATTTCAACCTACAGCCAGGCTTGGGCTGCGAGATGTGTAACTGCAACCCCATTGGCTCCTCCTCTTCGGCGTGTCATCCGGTCACGGGACAGTGTGTGTGTCGAACAGGTGTGGAGGGGCAGTCGTGTGACACTTGTCGAATGGGATTCTTTGGTTTCTCCTCTAGAGGCTGCAGAGCATGTAATTGTGACCCCATGGGCTCGTCCTTGATGCAGTGCCATGACAACGGGACGTGTTCTTGTCGCCACGGATTTGTTGGTTATAAGTGTGACAAGTGTGAACTGAACTACTACCAAAGCCGCCTGACCCACCAATGTGAGGAGTGCCCTGTGTGCTACAGCCtcatcagagaccagGCCAGTAAACTGAAGGCCAGACTGCAGGAGTTGGAGACGCTGCTCAGCAGCTATGACTGCAATAGATACAGTCGGCATTATCGTGGACGCCAGCAGCACAGACACCAATACACCGGCCTGGACAATCACATACAGAAGGACCAAGTTGAAGACTATCTGCCCAATGCCCTGGAAGACCTCCTAGCTATTCAAGAGGCTCGTGAGGCCTTCATTAAGCAGTTCTCACAGCTGGAAACATCTGCCCAGACCTTACAGCTGCAGCTGCGTAGCATTGCAACAGCATTGAACTGCAGCTTAACAGACAGCGGAGAAGTTAGAGAACAAGAACAGACTCCGAAGGGTGAAAACGAGTGTGAAGAGCTTGGTGACACTTTATCCGCTGCTCTGAATATGCAAGGCCAGCTTAAGAAGATGACTCTTGACCTTAACAGCATGGCCATCCCGCCTGTAATCCCTAAAGAACCAAACAAATGGAACACCATAGTGAATGAGTCCGAGGTGCTAGCGAAAAGTCACACAGACGCTGCAGCTCACATAGAGCGGATAGCAGAAGATGCCTTTAAAATGGCTAACAGAACCTATTCACAGCTAATCACGTTACTGGAAGACAACTCCACAGAGTCCTATGTACAGGATCTCACAGAGAAgctGGAGGAGATGCAGCGGTTGAAGGAGAGTCTGACTCTTGAGGTTAATGAGACCTTAGTGACACACCTGTCGCTTCAGAGCCGCAACTCCGAAATAGCCGCCATTTTAGAGAATATCACCGCCTCGCTGTCTGACCTACGCAGAACGGATGGCACTTTCGGCCTCACAGCGCAGGAGTCCAATATAACGTCTTTCTCGCAGACGCTTAATCAAACAAATGTAACGGCAACCCAGGATCCTGAAATCGCAGAGATTAAGGACCTGATGAACAGGACAGCTGAGTTGGATGTTTCTGTCCAATCCCAAGAACATTTGATAAATAAGACCATGGAGGAAACACAGCCTCACGTGGACAGTGTTGAAAAACACCTGAAAACCGTTCAAGAGCTCAAGCAGCTGACGGATGTGGCTGAGGGATTTAGGGTGTCAGCCGTCTCCTCTGTGGTGACAGGGAAAGAGGTTGAGGCGGAGATCCTGTCTTTACAGAAGGGTCTGGAGGACGTGGAGCAAGACTGGCCTCAGCTGCCCACATATAGCAAAGGATatctggagagagagaaggggctAAATGGGAAGACCCTGGTGGAAGTGAAAAAAAGAGTCAAGCTGACAGAGAGAATGATCAAGCCTGCGGTGGAGAACGCTACGGCTGTGAGCAGCACAGCTAAACAAGCCCAGGAGTCTGCAGATGCGGTGGCTAAAGATGCCAAAGCGTCCCTCACGCAGGGGAAACGGACTAAGCATGCATCTGGACAGTTGCGCTCAGCTGCGGACACCACCCTGGAGCGGTTGACTGAGCTGGAAAGCCGAGCTTCACGGAAACAAGAAGCCGTAGAGGGAGAGGAGGACATCCAGCTTTCTTCAAGGAGTGTGACAGACAGCATGGAGACGGCCAAGAGTCAGCTGGAGTCCTTTACAAACACGCTAACTCTGCTCCTTAAACAACTGGATGCTAATGCGGCGCTGGAGAGCTATGATCGCATCCTGAACGAGACGGCAGCCCGTCTCCGCGTTCTCCAGGGTGCTGTGGAGAGTCCGTCTCTCACCGGAAAGATTCAGAGGCTCCACGGCGCTGCGCGCGATCAAGAGAAAGAGCTGCGGCATCTCGAACAGAGCCTGCAGGAGCTACGAGAAGAAAGAGACAGTCTGACAGACATCGCTCAGAACTTGCCTAAAACATGCCCACAAAAAGGGCACTAAGGGGAGGAAGAAGTCCATCGCTTATCTAGTCTTTTAGAGAGACATTGGGGTAGCTCAAAAGGAGTTAGTCGCCTCAGAAAATCTGAATCAAAGGAAGCTGAAGATCAAAAAACCTCTGAAATCCCCCTTTCCCGTTCCTCTTTCCGCTGCGTCTTGTTATAAAAGCAATACTGAACGTATTAATgacacattaaaaagtaaattcttTATAA

Function

GO: NA

KEGG:

id description
K06247 LAMC3; laminin, gamma 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49541 lncRNA downstream 104103 6178172 ~ 6178671 (-) True G33615
TU49538 lncRNA downstream 108661 6173847 ~ 6174113 (-) True G33612
TU49536 lncRNA downstream 110362 6172144 ~ 6172412 (-) True G33610
TU49446 lncRNA downstream 299971 5980317 ~ 5982803 (-) False G33549
TU49448 lncRNA downstream 301892 5974699 ~ 5980882 (-) True G33549
TU49626 lncRNA upstream 265834 6609449 ~ 6611442 (-) False G33681
TU49627 lncRNA upstream 265834 6609449 ~ 6611492 (-) True G33681
TU49624 lncRNA upstream 265866 6609481 ~ 6611442 (-) False G33681
TU49629 lncRNA upstream 268125 6611740 ~ 6613055 (-) True G33683
TU49721 lncRNA upstream 415294 6758909 ~ 6796851 (-) True G33738
XM_043238967.1 mRNA downstream 1379 6265737 ~ 6281395 (-) True aif1l
XM_043239279.1 mRNA downstream 19472 6255418 ~ 6263302 (-) True gfm2
XM_043239699.1 mRNA downstream 38956 6232266 ~ 6243818 (-) True enc1
XM_043239784.1 mRNA downstream 183073 6096157 ~ 6099701 (-) False ankra2
XM_043239783.1 mRNA downstream 183108 6096157 ~ 6099666 (-) True ankra2
XM_043238323.1 mRNA upstream 419521 6763136 ~ 6792026 (-) False ttll11
XM_043238322.1 mRNA upstream 419521 6763136 ~ 6792024 (-) True ttll11
XM_043238584.1 mRNA upstream 484500 6828115 ~ 6830827 (-) True LOC122344933
XM_043240070.1 mRNA upstream 492268 6835883 ~ 6839683 (-) False LOC122345679
XM_043240069.1 mRNA upstream 492268 6835883 ~ 6839683 (-) True LOC122345679
unassigned_transcript_954 other downstream 326403 5956299 ~ 5956371 (-) True trnak-uuu_104
XR_006251120.1 other downstream 851380 5431264 ~ 5431394 (-) True LOC122346225
TU48850 other downstream 1659716 4622490 ~ 4623058 (-) True G33175
TU48822 other downstream 2089693 4144927 ~ 4193081 (-) False LOC122346168
TU49743 other upstream 480556 6824171 ~ 6826182 (-) True G33758
XR_006251011.1 other upstream 579815 6923430 ~ 6943192 (-) True usp20
XR_006251012.1 other upstream 587257 6930872 ~ 6943203 (-) False usp20
XR_006251117.1 other upstream 778107 7121722 ~ 7121849 (-) True LOC122346221
XR_006251118.1 other upstream 778724 7122339 ~ 7122464 (-) True LOC122346223

Expression Profile