RNA id: XM_043238969.1


Basic Information

Item Value
RNA id XM_043238969.1
length 2307
RNA type mRNA
GC content 0.47
exon number 11
gene id coro1ca
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 12716051 ~ 12756150 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAAACCTGACACTTTCAGGTTGCGTTGCACATTTAACAGATAGAGTTCTTGTGTTATGCATGCGTGGTTTAGGCTGCATTCATCAGACTGTTGAGCGTTACGATGGATATCTCACCATCAGCAGATATGTTCAAACGGGTTGTGCGACAGAGTAAATTCCGGCATGTGTTCGGCCAGGCGGTGAAGAATGACCAGTGCTATGATGACATCAGGGTGTCCCGGGTCACGTGGGATAGCGCTTTCTGCGCAGTCAACCCCAAATTTGTTGCCATAATTGTGGAAGCCAGCGGAGGAGGAGCGTTCATGGTTTTGCCTCTTCATAAGTCGGGTCGTATAGATAAGGCCTACCCTACAGTATGTGGCCACACTGGCCCTGTTCTGGACATTGACTGGTGCCCTCACAACGACCAGGTCATTGCTAGTGGATCTGAGGACTGCACCGTGATGgTGTGGCAGATCCCAGAGAATGGTTTGGTGACCTCCATGTCAGAGCCAGTGGTGGTGCTGGAGGGTCATTCTAAAAGAGTGGGAATTGTTACCTGGCATCCCACCGCCCTCAACGTCCTGCTCAGCGCAGGCTGTGATAATGTGATCATCATCTGGAATGTGGGGACTGGAGAGTCCATGATCACCCTGGAGGACATGCACCCTGATATCATCTTCAGCGTCTGCTGGAACCGCAACGGCAGCCTCATCTGCACCGCCTGCAAGGACAAGAAGGTCCGGGTCATCGACCCGCGCAAGGAGGAGATCATTGCGGAGAAGGACAAGGCCCATGAGGGTGCCAGGCCCATGAGAGCAATTTTCCTGTCTGACGGCAAAGTGTTCACCACTGGTTTTAGCCGCATGAGTGAGAGACAGCTCGCCCTCTGGGATCCGGACAATATGGAGGAGCCCGTTTCTGTCCATGAGATGGACACCAGTAACGGAGTCCTGCTGCCCTTTTATGATCCTGATACTAACGTGGTCTACCTGTGTGGAAAGGGTGACAGCAGTATCCGCTACTTTGAGATCACGGACGAAGCTCCTTTTGTCCATTACCTCAACACCTTTACCACTAAGGAGCCTCAGAGAGGCATGGGATACATGCCCAAGAGAGGGCTGGATGTGAACAAGTGTGAGATCGCAAGgtTTTACAAACTGCATGAGAGAAAGTGTGAACCTATCATCATGACCGTGCCAAGAAAATCGGACCTGTTCCAGGATGACCTTTACCCGGACACGGCAGGTCCGGATGCCCCCCTGGAGGCCGAGGACTGGTTTGATGGGAAGAACGGAGATCCAATCCTGATATCCCTGAAACATGGATACATCCCAGGCAAGAACCGGGATCTCAAAGTGGTCAAGAAGAACATCCTAGACAACAAGATGAGCAAGAACACAGAGAATACTGCCCCTGCCGTCAAGACTGCCACCTCCACACCATCTATCAAAAGTGAAGCTAAGCTGGAagaggttttgaaagaaatgaaatctCTCAGAGAGCTGGTCAGCAGTCAGGAAAAAAGAATTGCCAAACTTGAGGAGCAGCTGTCTAAAATGGACATCTAATGGACCCTGAAATCCCTTCCCCTTCTTCTATTCAGGATATCCCATTGGCCAGGTGGGCGGGACCCGTCACTGCCAATCACCATGACAGCGTTCCGTCTGAAGCCTGCCTTGAAAAGACTCCAACCAACATTCCAAGAttatcttctttcttttttttttttttttttttttgccatcccCAAAACCTGTTTATACCTCATAGCCATTTGGAAAACTAGAAACGCCTTCAGTTTCTCTCAAAATTTAACCCCGTTTAGCTTTTTACTCAGTCTCACTCCAAATCTTTCTGCAACGGCTGTGTTTTATCTGGTGTTCTCGAAAGGTCttaagttttttctttttctttttttttttgctttgtttttcttattaaaattgTGACCAAACAGATTGCTTCATGAAGTTAAATGAACTTGATGAGCTCAAAGTTCATCAGTATTGCAGTTTCCCTCTCGCCCCTTCTGAGTTGCCAAATTAAATGAGGAGTTATGCACCTCCCCGACAGTATTTGACTAGCTTTTCATTTTGTACTTTGTATAAGGGACAAAGCTATACGCTAGTAATGCAAGGAGGGGAAATCATTGGAACCATTCCTCAATGTTATAGGTGTGTTTCtagcgaataaaaaaaaaaaaaaaaaaaaaattttaatcaaacatGTAGAGTTGACGGTTTACAAACCAGTACTGGAAAACAATACAGGTGCACTAAAATATTCCACTAaggacttttttgttttaatcgggtattaaaata

Function

GO:

id name namespace
GO:0030036 actin cytoskeleton organization biological_process
GO:0015629 actin cytoskeleton cellular_component
GO:0051015 actin filament binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53008 lncRNA downstream 76674 12637190 ~ 12639377 (-) True G35966
XR_006250996.1 lncRNA downstream 109113 12602216 ~ 12606938 (-) True LOC122345380
TU52974 lncRNA downstream 178249 12532390 ~ 12537802 (-) True G35949
TU52941 lncRNA downstream 200501 12506761 ~ 12515550 (-) False G35928
TU52943 lncRNA downstream 206055 12463906 ~ 12509996 (-) True G35928
XR_006251055.1 lncRNA upstream 129628 12880061 ~ 12884157 (-) True LOC122345905
TU53066 lncRNA upstream 163193 12913626 ~ 12916013 (-) True G36004
TU53068 lncRNA upstream 163193 12913626 ~ 12916814 (-) False G36004
TU53073 lncRNA upstream 174310 12924743 ~ 12926462 (-) True G36009
TU53076 lncRNA upstream 183038 12933471 ~ 12933779 (-) True G36012
XM_043238971.1 mRNA downstream 1520 12712197 ~ 12714531 (-) True selplg
XM_043238972.1 mRNA downstream 3997 12708388 ~ 12712054 (-) True tmem119a
XM_043239228.1 mRNA downstream 14106 12685058 ~ 12701945 (-) True sart3
XM_043239229.1 mRNA downstream 14109 12685058 ~ 12701942 (-) False sart3
XM_043240345.1 mRNA downstream 42739 12668950 ~ 12673312 (-) False LOC122345863
XM_043240729.1 mRNA upstream 12147 12762580 ~ 12794103 (-) True ssh1a
XM_043240730.1 mRNA upstream 12147 12762580 ~ 12780282 (-) False ssh1a
XM_043240732.1 mRNA upstream 58077 12808510 ~ 12819678 (-) False svopa
XM_043240731.1 mRNA upstream 58077 12808510 ~ 12819673 (-) True svopa
XM_043238172.1 mRNA upstream 81233 12831666 ~ 12832738 (-) True isg15
TU52956 other downstream 210093 12501914 ~ 12505958 (-) True G35936
TU52745 other downstream 396366 12317803 ~ 12319685 (-) True G35825
TU52701 other downstream 546724 12165410 ~ 12169327 (-) False sh2d1aa
TU52507 other downstream 900241 11801314 ~ 11815810 (-) False msna
TU52344 other downstream 1063424 11583780 ~ 11652627 (-) True G35554
TU53125 other upstream 303411 13053844 ~ 13054857 (-) True G36047
unassigned_transcript_955 other upstream 625196 13375629 ~ 13375700 (-) True trnap-agg_13
TU53374 other upstream 828628 13579061 ~ 13582241 (-) True h3f3c
XR_006250976.1 other upstream 908644 13659077 ~ 13699226 (-) False lrch2
XR_006250977.1 other upstream 909541 13659974 ~ 13699226 (-) False lrch2

Expression Profile