RNA id: XM_043238979.1


Basic Information

Item Value
RNA id XM_043238979.1
length 1763
RNA type mRNA
GC content 0.41
exon number 6
gene id LOC122345143
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 14311644 ~ 14314601 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGTAAAGGTGTGTAGGCTATATTGACCCATTTTATTTCGCTGTTTATCCGGTCTCTGAAAATGTGAAAGTGAAAGACACAGTACGTCTGAAAACGAAACGGAAGATTGCTAGCCTGTACCGTGTCAGAAGACAGAGAGGAGAGCAGTTCGGAACTAAAGTTAAAATGGCTCAGAAAACTGATGTAGGATCAAAAGACCAAAGACCAAAGATTGCCGgaaataaatatttcatacttTCACCTCTGAAGACATTCAAGCTGAAGGAGGAAATCATAGATGCAATCTTTCAACAAACTCCACCTCAACTGGTGCAGACCGTGGAGGAGTGTGACgtcattttggttttatgtgttattgtttCAAGGACAGGAACTAACATCGATGCTGCACTGAATGAACTTAACTCTCTCTCAGAATCTAAACCAGCTGTTTTCGTGGTGCTTCATCACACATTTGACCCGGAGAAGATTGTGCCAGACAGCAGCAGTTATGTGAGCAGAGAGAATACACTCACAGTGGACTGTCTCTTCCGCGAGGACGAAGGACTCCTGAAGTGCGTGAGGAATCAAGACGCTCAGGCCAGAATCTGCCAATGGCTGCAACCACAAGACATACAAGACATAGAAGAGATATCCACTTCCAaTGAAAGTGATATAATTATTGCATCAGAACTTATGCTTGTCCTGCTGGGCAAGTCTGTGCGTGAGAAGACTGCGGTTGAACGCTTGATACTCGGCAGACAGGAGAGTCGGTGCGATCCAGCTCCAGCTCCCCTGAAGAAGATGACAGTAGATACTGAAGAGGTGGACGGGGAACAGGTGGCTGTGATCAACACTCCTGACTCCTGGTTCAACTCCTCGATTTCCATAgaggaaatgaaacaaaaaatacacttcTGTATCGACATGTCTTCTAGAGGACCGTACGCTTTACTGCTAGTCATACCAGTAAAACAGTTTTGTCAAATGAAGAGTGAGATTTTGGAgatttttaaaaccaaattcTATAAGAGGGTTATGCTCCTTTTCACTGCTACTAATGAACAAGAAGAGCAAGAGATCAAAAAAGATAATCTCGAGGAGCTAATGAATGCTTGTGGTTTTGATTGTTTTCATGTCCTGAACATTAGTCAGATTGGGAATAGAGCTCAGGTTTCAGAGCTGCTGAAGAAGGTAGAGAAGATAGTGAAAGGAGATTGTAAAGTCTGTGAGATGAGCAAAACTCGGATTGAGGAGATTGAGGAAGTTATTACAAATCGTAAACAGGTAAGCGTAGGAGAGATGAAGAACTACATTAAGGTGACACTGCCAAATTTGACGCGCACAGTTTGGATAGCAGAAGAAGAGTCTAGCGATATTAGTGAATCTTATGTGATGCTTTAGAGGCCTGGAAAATTATTGTAGGAAGTCGAGTGTTTATATTATTCAGTTTGCATGTTAAATGATGCTTTAAAAATCTACAGAAATGCAGAATATAtgtttaaaagctaaaatatgaTGATGAAGCTGAACGTTAGGGTGATGGAGGGGCCAAATATTTCTTTAGACCTGAATCCTATTGAGCACATGTGGGCATCCTTAAGAGGAAGATGGAGGAACACCATGTGTCTAACATCCAGCAGCTCTGGAGGAACATATACTAAAgcataaatattgttaaatgctaaaattgttGCTGATATGTATAGGGGTTTACTCACTTTTGTGGGATTTTGTATATGTAGTATccttaacatgaaataaatgtatttcaaacacCTCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53675 lncRNA upstream 264150 14046777 ~ 14047494 (+) True G36420
TU53657 lncRNA upstream 304242 14005771 ~ 14007402 (+) True G36408
TU53655 lncRNA upstream 308113 14000526 ~ 14003531 (+) True G36406
TU53654 lncRNA upstream 311307 13999100 ~ 14000337 (+) True G36405
TU53521 lncRNA upstream 336885 13974532 ~ 13974759 (+) True G36332
TU53795 lncRNA downstream 6955 14321556 ~ 14322681 (+) False G36503
TU53796 lncRNA downstream 9750 14324351 ~ 14326754 (+) True G36503
TU53787 lncRNA downstream 18467 14333068 ~ 14335183 (+) False LOC122345214
TU53790 lncRNA downstream 18467 14333068 ~ 14337765 (+) True LOC122345214
TU53801 lncRNA downstream 27322 14341923 ~ 14342507 (+) True G36507
XM_043238981.1 mRNA upstream 1568 14306837 ~ 14310076 (+) True LOC122345145
XM_043238978.1 mRNA upstream 6340 14302744 ~ 14305304 (+) False LOC122345142
XM_043238976.1 mRNA upstream 6340 14302822 ~ 14305304 (+) False LOC122345142
XM_043238977.1 mRNA upstream 6340 14302822 ~ 14305304 (+) False LOC122345142
XM_043238381.1 mRNA upstream 24204 14283080 ~ 14287440 (+) True si:ch211-271e10.2
XM_043238980.1 mRNA downstream 1098 14315699 ~ 14320923 (+) True LOC122345144
XM_043240101.1 mRNA downstream 6927 14321528 ~ 14322697 (+) True cxcl11.8
XM_043240102.1 mRNA downstream 6931 14321532 ~ 14322697 (+) False cxcl11.8
XM_043238535.1 mRNA downstream 9742 14324343 ~ 14326767 (+) True LOC122344908
XM_043239124.1 mRNA downstream 18422 14333023 ~ 14334228 (+) False LOC122345214
XR_006250972.1 other upstream 6340 14300043 ~ 14305304 (+) True LOC122345142
XR_006250973.1 other upstream 6340 14300043 ~ 14305304 (+) False LOC122345142
TU53776 other upstream 19144 14290420 ~ 14292500 (+) True G36495
TU53623 other upstream 325938 13984097 ~ 13985706 (+) True ins
XR_006251084.1 other upstream 1504428 12803952 ~ 12807216 (+) False LOC122346073
TU54000 other downstream 332888 14647489 ~ 14651911 (+) False fgf5
TU54012 other downstream 403931 14718532 ~ 14720487 (+) True G36640
TU54916 other downstream 2169401 16484002 ~ 16560732 (+) False G37227
TU54918 other downstream 2169401 16484002 ~ 16560732 (+) True G37227
TU54920 other downstream 2172019 16486620 ~ 16561741 (+) True G37228

Expression Profile