RNA id: XM_043238989.1


Basic Information

Item Value
RNA id XM_043238989.1
length 668
RNA type mRNA
GC content 0.50
exon number 7
gene id rpl12
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 7121409 ~ 7123998 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTCGGTCTTTTCCTCTTTCGCTTTTGTGGTGAAGGTGCAACGCATTTCGGTCGTCCCGAATCCGGGTTCATCCGACACCCTCACCTTTTCGAGTCGAACCGAGGTCAACCGTGTCTGATACAACATGCCTCCCAAATTCGACCCCAGCGAGATTAAAATTGTGTACATGAGATGTACCGGTGGAGAGGTTGGTGCCACTTCCTCTCTGGCCCCCAAAATCGGACCTTTGGGTCTTtccCCCAAAAAGGTGGGTGATGACATTGCAAAGGCCACCGGCGACTGGAAGGGCCTGCGAATCACTGTTAAACTGACCATTCAGAACAGGCAAGCAGCGATTGAGGTGGTGCCATCAGCTTCAGCCCTCATCATCAAGGCGCTGAAGGAACCTCCCCGTGACAGGAAGAAGGTCAAGAACAttAAGCACTCTGGAAGCGTTACTTTCGACGAGATCGTCGGCATCGCCCGTGTCATGAGGCCACGATCCATTGCCAGGGAGCTTAGTGGTACCATTAAAGAGATTCTTGGCACTGCTCAGTCTGTGGGCTGCACCATTGACGGTCGTCTTCCCCATGATGTCATTGATGACATCAACAGTGGCAAAGTTGAATGCCCAGCtGAGTAAgaagactaaaataaataaaacaaataaataaaaccatttaaaatga

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02870 RP-L12e, RPL12; large subunit ribosomal protein L12e

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49823 lncRNA downstream 70085 7050977 ~ 7051324 (-) True G33816
TU49781 lncRNA downstream 122025 6998360 ~ 6999384 (-) True G33788
TU49818 lncRNA downstream 132637 6988026 ~ 6988772 (-) True G33811
TU49817 lncRNA downstream 135190 6986000 ~ 6986219 (-) True G33810
TU49816 lncRNA downstream 137536 6982426 ~ 6983873 (-) True G33809
TU50023 lncRNA upstream 69978 7193976 ~ 7194213 (-) True G33947
TU50064 lncRNA upstream 210416 7334414 ~ 7336545 (-) True G33985
TU50073 lncRNA upstream 242252 7366250 ~ 7395232 (-) True G33990
XR_006251018.1 lncRNA upstream 326379 7450377 ~ 7460111 (-) False LOC122345654
XR_006251019.1 lncRNA upstream 326379 7450377 ~ 7460111 (-) True LOC122345654
XM_043238628.1 mRNA downstream 11577 7105673 ~ 7109832 (-) True ccn1l1
XM_043240920.1 mRNA downstream 18678 7091366 ~ 7102731 (-) False lmo4a
XM_043240919.1 mRNA downstream 18680 7090165 ~ 7102729 (-) True lmo4a
XM_043238577.1 mRNA downstream 78812 7019527 ~ 7042597 (-) True LOC122344928
XM_043239747.1 mRNA downstream 166627 6952410 ~ 6954782 (-) True LOC122345529
XM_043238992.1 mRNA upstream 10080 7134078 ~ 7141495 (-) True fkbp15a
XM_043240178.1 mRNA upstream 17631 7141629 ~ 7148537 (-) False crata
XM_043240177.1 mRNA upstream 17631 7141629 ~ 7148537 (-) True crata
XM_043239709.1 mRNA upstream 33496 7157494 ~ 7162360 (-) True ier5l
XM_043240191.1 mRNA upstream 156447 7280445 ~ 7286031 (-) True ndor1
XR_006251012.1 other downstream 178206 6930872 ~ 6943203 (-) False usp20
XR_006251011.1 other downstream 178217 6923430 ~ 6943192 (-) True usp20
TU49743 other downstream 295227 6824171 ~ 6826182 (-) True G33758
unassigned_transcript_954 other downstream 1165038 5956299 ~ 5956371 (-) True trnak-uuu_104
XR_006251120.1 other downstream 1690015 5431264 ~ 5431394 (-) True LOC122346225
TU50081 other upstream 258348 7382346 ~ 7397153 (-) True G33998
TU50440 other upstream 595698 7719696 ~ 7721463 (-) False si:dkey-220k22.3
TU50633 other upstream 1287884 8411882 ~ 8414806 (-) True G34372
TU50638 other upstream 1305702 8429700 ~ 8431575 (-) True timm8b
TU50888 other upstream 1550551 8674549 ~ 8677718 (-) False LOC122345093

Expression Profile