RNA id: XM_043239012.1


Basic Information

Item Value
RNA id XM_043239012.1
length 3106
RNA type mRNA
GC content 0.53
exon number 20
gene id srrt
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 31674315 ~ 31683580 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttaaaagcCTGTCAGCCTGCGACATTTCGGTCATCCGGTCACACAGTGGCGCGGCAGTTCCGTATATGACAGTCACTTCCGCCGCTGCTGGTCAGGACGGTCGCGCGCTGGCGGGAGTTCACCggattaaatcttttaaaacctaGCAATTGCAAAGCTTTCCCGATTAAAACACCATGGCCGACAGCGACGACGAGTACGACCGCAGACGAAGAGACAAGTTCCGCCGGGAGAGGAGCGACTACGACCGGTCCCGAGAGAGAGAGGACCGCCGCAGAGACGACTGGAACGACCGAGAGTGGGACCGGGGCCGCGAGCGGCGCAGCCGAGGGGAGTATCGGGACTACGAGAGGGGCAGGCGAGAGAGGTTTTCCCCTCCGCGTCACGACATGAGTCCCCAGCAGAAGCGCATGAGGAGAGACTGGGATGACCATGGAGGTGACCCTTACCATGGTGGCTATGACCTGGGTTATGGAGGTGGTGGAGGACCCAGCTACGCCCCTCCTCAGCCGTGGGGTCACCCCGACATGCACCTGATGCAGCCTCATCACGGAATCCCCATCCAGGCCAGGCTGGGAAACATCCACGATATGGATCTTGGTCCTCCCCCTCCTGTGATGAAGACCTTTAAGGAGTTCCTGCTGTCCCTGGATGACTCTGTGGATGAGACCGAGTCAGTCAAACGCTACAATGAGTACAAGATCGATTTTAGGCGTCAGCAGATGCAGGACTTCTTCCTGGCACATAAAGATGAAGAGTGGTTTCGTTCGAAGTACCACCCGGATGAGGCCGGAAGGCGTAAAGCAGAAGCCCACAGTGCTCTACAGAATCGACTGAACGTCTACATGTACCTGATGGATAATAACTCGTTTGAATCAGTCTCTTTGGACATAGAACATGCTCCACAAATCACCAAGATTTTAGATGCAGCCGTAATAAAGATGGAAGGAGGAACGGAAAATGACCTGCGCATCCTGGAGCAGCCCaccgaggaagaggaggagcgaGAGAGACTGTCCTCTGGTGCACCTGGTTCTGAAGCTCCTAAACGGGACGAGCCCAGGCCCGCAGAGGTTGAGCGCAAACCCTCGGCTGAAAAAGACAAGGGTGAGGGTGATGACGGCGCTGAGAAGGATGCAGCCGCTTCTGCAGGAGGAAGTGAAGGAGAGGAGAAGACCGAGAAGGAAGCACCCGCTGAACCAATCCCAGAACCCAAGAAGCTGAGCaagaagagaaagaggaagcaCAGTGGAGACAGTGAAGATGAAGCCAGTGCATCTGACAGCGAATCAGATTCTGACTCCGACTCAAACTCTCACTGCTCTGAGAAACctttagaaagagagagagagccggaTGAGGGAGAGgataaagaggaagaggaagaagaggagggggAAGCTGCTGATGTGAAGGAACGAACGGAGGAGCAGAAGGAAAGGGAGAAGGAAAAGGAGAAGAAACCCAAGGACGATCAGCCCCCACGACCTCGACCTCTTCACAGGACCTGCTCTCTCTTCATGAGGAGCATCGCTCCAACCATTTCTAAAGCGGAGATCGTCGCTCTGTGTCGACGTTATCCAGGATTTAtgcgtgtttgtttgtcagaACCGCAGCCAGAGCGCAGGTTTTTCAGGCGTTGTTGGGTGACGTTCGACCGAGGTGTGAACATCAAAGAGATCTGCTGGAACCTGCAGAACATCCGGCTGCGGGACTGTGAGCTGGCTCCTGGGGTCAATCGAGATCTGGCACGTCGCGTGCGGAACGTGAACGGAATCACTCAGCACAAGCAGGTTCTCCGTAATGACATCAAACTGGCCGCTAAACTGATCCACGCTCTGGATGACAGGGAGAGGCTCTGGAGCGTCAAACCCAGGGAAGAGACGCACACTCTGGAGCTCCCTGCTCAGAACCCCATTTTGAAGAACATCACTGATTACCTGATTGAGGAAGTGAGCGCAGAGGAGGAAGAGCTTCTGGGGAGTGCAGGAGGAGCCGACTCTGAGGAGGGATCCAAGGAGGGAAACCCTACTGAGATAACTGTGGAGAGAGATGAAAAACTCGTCAAGGTGTTAGATCGTCTTCTGTTCTATCTGCGTATCGTACACTCCATTGATTATTATAACAGCTGTGAGTACCCAAGCGAGGACGAGATGCCAAACCGCTGCGGTATTATCCATGTGAGAGGGCCCATTCCCCCCAACCGCATTACTCACAGAGAAGTGGCTGACTGGCAGAAGACGTTTGAAGAGAAGCTGGGACCCCTGTTCAGTGTGAAGGAGTCCCTGTCTGAAGATGAGGCAGCAAAAATGGGCCGTAAAGACCCAGAACAGGAAGTGGAGAAGTTTGTGCTGGCCAACACGCAGGAACTGGGCAAAGACAAATGGCTCTGTCCTCTAAGTGGCAAAAAgtttaagGGCCCAGAGTTTGTGAGGAAGCACATTCTAAACAAACATGGTGACAAGATTGAGGAAGTAAAGAAAGAGGTTGTGTTTTTCAACAACTTCCTGATGGATGCAAAAAGACCCTCCATCCCAGAGATGAaacctccacctcctccaggCCCAGGACAGGGAGTGCTTTCCCCGGGAGGTCTTCCATTCCCACCTCAGGGTCCTCAAGGTCTCATGGGTTTCGGTCAGCCCAGGCCTCCAGTGATGGGTTACGGAGGCGGCCCTCCTTACCCACCCAACCAGTACGGTGGAGGAGGCCGGGGCAACTACGACAACTTCCGTGGACAGGGCGGATACCCGGGAAAACCCAGAAACAGCCGAATGATGCGCGGGGATCCTCGCAATATCATTGAATACCGTGACTTGGATGCTCCAGATGATGTGGACTTCTTTTAGAGCTCCATTTTTATTCTCtccattttaatctttttttttttttttttttttaaaccattatttcagattttttgcattcattccAGAAGCCGCCCCTTACCGTCTTCTCCTGTGTGCTCTTATGTATTACAGTAGTGCTCCACCTGAAGTCAACGCATGTCCTTTATGTTGAACGTCAATGCATACTCGGTGTTCTAGATATTGAGCTTGTGCTTGTGGCCTTTTTTTCTTCCAATAAAACTTTGATTTGGACCCTT

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0031053 primary miRNA processing biological_process
GO:0008283 cell population proliferation biological_process
GO:0005654 nucleoplasm cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60767 lncRNA downstream 25703 31646858 ~ 31648612 (-) True G41034
XR_006251025.1 lncRNA downstream 176221 31456500 ~ 31498094 (-) True LOC122345708
XR_006251024.1 lncRNA downstream 176221 31461934 ~ 31498094 (-) False LOC122345708
XR_006251026.1 lncRNA downstream 176221 31477391 ~ 31498094 (-) False LOC122345708
TU60685 lncRNA downstream 179046 31435649 ~ 31495269 (-) True G40996
TU60737 lncRNA upstream 388 31683968 ~ 31684836 (-) True G41019
TU60730 lncRNA upstream 8286 31691866 ~ 31695788 (-) False G41018
TU60732 lncRNA upstream 8286 31691866 ~ 31695788 (-) True G41018
TU60733 lncRNA upstream 8286 31691866 ~ 31695788 (-) False G41018
TU60772 lncRNA upstream 28771 31712351 ~ 31732259 (-) True G41037
XM_043238917.1 mRNA downstream 2707 31668017 ~ 31671608 (-) True LOC122345089
XM_043238916.1 mRNA downstream 2713 31668017 ~ 31671602 (-) False LOC122345089
XM_043238915.1 mRNA downstream 2713 31668017 ~ 31671602 (-) False LOC122345089
XM_043238913.1 mRNA downstream 6700 31661478 ~ 31667615 (-) True si:ch211-283g2.2
XM_043238912.1 mRNA downstream 14653 31651505 ~ 31659662 (-) True si:ch211-283g2.1
XM_043239558.1 mRNA upstream 18873 31702453 ~ 31711737 (-) False apooa
XM_043239559.1 mRNA upstream 18873 31702453 ~ 31711734 (-) False apooa
XM_043238572.1 mRNA upstream 49878 31733458 ~ 31735951 (-) True zgc:153704
XM_043239997.1 mRNA upstream 76356 31759936 ~ 31857602 (-) True LOC122345662
XM_043238392.1 mRNA upstream 176316 31859896 ~ 31864890 (-) True zbtb43
TU60335 other downstream 847957 30819515 ~ 30826358 (-) True G40752
TU60340 other downstream 847957 30819515 ~ 30826358 (-) False G40752
TU60266 other downstream 881596 30789633 ~ 30792719 (-) True G40713
TU60256 other downstream 977627 30631028 ~ 30696688 (-) False G40711
XR_006251005.1 other upstream 18873 31702453 ~ 31711737 (-) True apooa
TU60769 other upstream 37690 31721270 ~ 31722906 (-) True G41035
XR_006251008.1 other upstream 438704 32122284 ~ 32173823 (-) False tnca
XR_006251085.1 other upstream 530696 32214276 ~ 32293782 (-) False LOC122346090
XR_006251086.1 other upstream 530712 32214292 ~ 32293782 (-) False LOC122346090

Expression Profile