RNA id: XM_043239020.1


Basic Information

Item Value
RNA id XM_043239020.1
length 3662
RNA type mRNA
GC content 0.49
exon number 16
gene id LOC122345160
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 26884570 ~ 26897222 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTTGAGTTCAACAATCCCTTCAAGTTACGAGCGACAGATAGCATGGCGGCTAATGCTGGGGGCGCGCGGGGAAGTCGTGGCAGTTAAACAACTTCTAAAACGATTAAACGAAATCCGGCGGTAATGGACGAAGGGCGTGTCATAATGTGAAGGACCCGCACCGCTACATGTCCAACACAAGTGGAAGCGCGTACTTTTTTAATATGGCCACTCGAGAGACGAGGCAATACCGACGGGCCACGATGGTGAAGCAGGAGCAGGACGACGACTCTGACGCAGAGGAGTCGACTATCTCGTTTAAGAAACCGGACGGACGCGAGTCGCAGATCATCCACAGCGGTCATTTTATGGTGTCTTCTCCTCACACCGATCACCCCCCAAAGAAAGGTTACGACTTCGacactgtaaataaacaaacctgCCAGACGTATCACTTCGGGAAGACGAGCACGTCTCATCTCTCTATCGACGCTTCCCTGACGAAGCTCTTTGAGTGCATGACTCTCGCTTACAGTGGAAGGCTGGTGTCACCAAAATGGAAGAACTTCAAAGGCCTCAAGCTGCTGTGGAGAGACAAGATCCGCCTCAATAATGCTATTTGGAGAGCCTGGTATATGCAGTATGTAGAGAAGAGACAGAACCCCGTTTGTCACTTTGTCACTCCTTTGGATGGCAATATGGACTCAGGAGTACATCGACCAACTGAGGCAATAGCAACAGAAGGAAAGTATTGGAAAAGGAGAATTGAAATTGTCATCAGAGAATATCATAAATGGAGAACATATTTCAAGAAAAGATTACAGAAACACAAAGATGAAGACCTGTCCAGCCTTCTCAAGGGGGCGGAGGAACAGTTTTCACTCTTTGGGGAAGTGTGTCCAGACACCTGCCGTGTCCTCTTGTGCCAGGATGAGGATGTCAGTCTGGGAGGCCGTCGTAGATCCCGCAGGAGTCGTGATTCGCCTGTTCCAATGGAGATGGACTCGCTCTTCGACATGGACGTGCTCATGTCTGAATTCTCAGACACGCTGTTTTCCACACTGGCCTCTCATCAACCTGTAGCGTGGCCTAACCCGAGGGAGATTGCCCACGCAGGTAATGCAGATATGATCCAGCCAGGACTCATCCCACTGCAGCCCAATCTTGACTTCATGGACACTTTTGAGCCTCTGCAAGATTTGTTTCACACTCTGCGTCAGCCAGCCTTTCCCTCCACTTCCCCCACTGCCCCATCCATCACCCCCTTAACTAGCAGCAGCTCCCAAACACAGGCTTCTTTGCTGTCGTCCATGGACTACCGCCTCATCCCCTCTGCTCCTTTGCCCAGCCACCTCTCGGTCTCCAGCCAGGACAATGGTAACGCCGTCGGCCCACCCTACACACAAACCTACATGCCTCTTTTCCAAGAGCAAGTGACCCCCTCCGTCCCATCACTCCTGCCTCCGCCAGCTCCTCCTCTCCCACCAGCCCCACAGCCTCTCCAGTGTGGAGGCGTTTCTGCAGTTACCACAGTCCCCCAGACCGCCCCAAGCATCCCACCTCCATCCGTAATAACGCACGCCGCCCCTTCCACAGTAACTCCCACCGATGCAGCCACTACCTTCAGTCACAGAACAAGCTTTGAGCTGCCCGCCGCACCATCTCCACAGCCTGCAGCCTCGACGTCCTCCTCACTCAACTCTCAGGCAGTCGGCTTTGCCTTGCCCAAATCCATTCTGCCCCCTGTCTCTAGCAAAAAGGCCAGACACCCACAGAGACCGATTGTCCCGGCCAACCCGCTGCCATCTCCTCAACTCATACTCACAGGTCCCACCAGTGCTGTCATTGTCACTCCGTCTCCTCTCAGCTCTGATGTTGTCCCCAGCACTGGTATGGTCATTGCCTCCTCCAGTATTCCTTGTGGTTCTGCTGGTTTTCATATTCTCCCTCAGACTCAGAAGTCGCCGCAGCTAATCATACCCAAAGAAGAAACTACCACAACCATATCCAGCAACAAGTGTAACAAGCAGCAAGTGCAGTCAGCAAGTACAGtCCACGACGGTCGCGTCTCAGGTCAAGGTTCACCATTGGGAGCAGAACAGGTACCGAGCCCCCAGTCGCCGCTCAACCCTACGGCAGGCATGGGCAAAAATGAAACCAGTCAGATTAGTAATGCTGCGACACTTCAAAAAACAGTCGACTACATAGGCAAACTACAACTAGAGAGACAGCAGATGCAGGAAGAGACAAAGAGGCTGCGAGAGGAGATTGAGGAGCTTAATACATCTATAAGCTTGTGCCAGGAACAGCTTCCTGATACAGGGGTTCCCATCACACGCCACCGCTTTGACCACATGAGGGAGAAGTTCGACGACTATGTGAAGAGCAGAACTCTTCAGAACTGGAAATTCTGGATATTTAGCGTCATTATTCAGCCTCTGTTTGAGTCCTTCAATGGGACGGTGTCTACCACCAACAACACAGAGCTGTGTGAAACCACCATGCAGTGGCTGGATCGGTACTGCTCCCTCCCGGTCCTCAGACCTATGGTCCTCAGGACGTTACGACAGCTCTGTACCAGCACCTCCATCTTGACCGATCCCTCACTTTTGCCTGAGGAAGCTAAAAAGGCTGCTCTCAACCCCAAAAAACATTCCTCAGGATCCTAGTTTTAACACgcgattttagtttttattcagcGGGAGGCTGTCCGTCTTCAAGGAGCGCCGACGGCGACGCTTGTGGTAAAACCTTTGCTTTGTTGTTGCTCACTGAACTCATTTAACTCTACTCAGACTGCAAGAGAACCGCTTGATTGTTTGCTTTCAATCTGTTCTGGTATGAAACGGAGACCTCGACCCCTTGCGTACGTCGTTTTTATGTACATGAATGATACTTAATAGAAGCGGTCACTTAGCATTTATCTACGTGGGAGCCTTGAAGAGAACGAGCCTCCTTTttcaacatttgaaatggatttatttcaaaatgacaaacCAAAGGCAATCGGTCTTGTTTACATGCAGCGTCCGGAGCCGTACGACACTGTGTTTCTGAGACGGAGACGTTTCACCAGAGCTGTTGTCTTTTAGATTCGTGGATTTTACCTCTCAGGGTGTTTTTCCCGTATGTTTTAGGTGTCTTCCATATCTTATTTAGAATGTTTAGCGGAGCCTTAGCCTCAGTTGATCCAAAGCTACATCACCACTTATCAAATACCAGGATCAAGACTGTCTTTTTGAAGTGCTCGGGCAGATGCATGGGTTCAAATAAACTAGAGCCACAGATATTTCTATTCTGATGATAAGGCACATTTGTTGTGCCTTAAATCAAGTAGAGCTATAGAAGAAACGAGTCCAGTGATTTGTCaattgtatagtttttttttttttttttttttttttttgctgtaggaTTTTAGGcatataatgataaaacaaaaaataggcCTTTCAGTAGCATTTGATTTTTTCCCCTTGGAGGCTGACTTGAGCCAGCCACCTGAGTATTACAGTTTACCTGAAATGGCCACAGGTCTGAAATGCAAGAATATGTTGTTAcgtatgaaaatgtatttttcacagtGTGCTTTAAATGTCGATTTGCTCTGTTGTGTTTCTGCAAAAACTGAATGAACCTTTCCATCTCTGGGCTGTTCCCAGtaataaatgattttgcattca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58747 lncRNA downstream 1395 26876590 ~ 26883175 (-) True G39712
TU58749 lncRNA downstream 1395 26876590 ~ 26883175 (-) False G39712
XR_006250952.1 lncRNA downstream 510748 26372619 ~ 26373822 (-) True LOC122344941
TU58531 lncRNA downstream 730867 26153465 ~ 26153703 (-) True G39585
TU58525 lncRNA downstream 765487 26118474 ~ 26119083 (-) True G39579
TU58799 lncRNA upstream 184779 27082001 ~ 27084786 (-) True G39738
TU58800 lncRNA upstream 202593 27099815 ~ 27107385 (-) True LOC122345426
XR_006250928.1 lncRNA upstream 218745 27115967 ~ 27146962 (-) True LOC122344810
XR_006250927.1 lncRNA upstream 229907 27127129 ~ 27128456 (-) True LOC122344809
XR_006250929.1 lncRNA upstream 232025 27129247 ~ 27146962 (-) False LOC122344810
XM_043238619.1 mRNA downstream 14976 26863405 ~ 26869594 (-) False rsrc2
XM_043238618.1 mRNA downstream 14976 26863405 ~ 26869594 (-) False rsrc2
XM_043238623.1 mRNA downstream 15576 26863405 ~ 26868994 (-) False rsrc2
XM_043238622.1 mRNA downstream 15576 26863405 ~ 26868994 (-) False rsrc2
XM_043238621.1 mRNA downstream 15576 26863405 ~ 26868994 (-) True rsrc2
XM_043239026.1 mRNA upstream 241 26897463 ~ 26901674 (-) False unga
XM_043239025.1 mRNA upstream 241 26897463 ~ 26901241 (-) True unga
XM_043239543.1 mRNA upstream 100327 26997549 ~ 27001260 (-) True LOC122345425
XM_043239546.1 mRNA upstream 104425 27001647 ~ 27014498 (-) True LOC122345427
XM_043239542.1 mRNA upstream 198158 27095380 ~ 27099719 (-) True LOC122345424
unassigned_transcript_1081 other downstream 773168 26111332 ~ 26111402 (-) True trnag-gcc_64
unassigned_transcript_1080 other downstream 775000 26109500 ~ 26109570 (-) True trnag-gcc_63
unassigned_transcript_1079 other downstream 783161 26101339 ~ 26101409 (-) True trnag-gcc_62
unassigned_transcript_1078 other downstream 792574 26091926 ~ 26091996 (-) True trnag-gcc_61
unassigned_transcript_1077 other downstream 794782 26089718 ~ 26089788 (-) True trnag-gcc_60
TU59072 other upstream 485699 27382921 ~ 27398720 (-) True isca1
TU59237 other upstream 991901 27889123 ~ 27895454 (-) True LOC122344874
TU59335 other upstream 1358606 28255828 ~ 28264704 (-) True G40080
TU59455 other upstream 2563363 29460585 ~ 29490204 (-) True G40182
XR_006251000.1 other upstream 2719777 29616999 ~ 29655061 (-) False eng

Expression Profile