RNA id: XM_043239036.1


Basic Information

Item Value
RNA id XM_043239036.1
length 6036
RNA type mRNA
GC content 0.42
exon number 20
gene id lrch2
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 13654294 ~ 13699226 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACGCCAGGCAGCCCCCTATTATTATTGTAAGAATAATTTCACTTATGAAAATGGCGGCGAGTCAGGGAGCTGTAGGACCCGCGGCGGCTCTCCAGAGCCAGCATTATCCTAATGTAGCGCACTGGAACCCAGGCGtgatgcagcagcagcagcagcacccGCTACACACCGCCCGCAGTCTGGAACGAGCGCTGGAAGACGCCGTCTGCTCCGGGATGCTCAACATCAGCGGAAGGAAGCTGCGCGACTATCCGGGGCTCAATTACGATTTGACCGATACTACACAAGCAGACTTGTCGAAAAACCGTTTTTGTGAAATCCCACCAGAAGTTTGTATGTTTGCGCCACTGGAGTCATTAAACCTCTACCACAACTGCATAAAGGTGGTCCCAGAGGCCATTATCAACCTACAGATGCTCACCTACCTGAACATCAGTCGAAATCAACTGTCCGTTCTCCCCAAGTTTCTCTTTAATCTTCCTCTGAAAGTGCTGGTGGTCAGCAACAATAAACTCCTATCCATTCCTGAGGAGATCGGAAAGGCCAAAGATGTTATGGAACTGGACATCAGCTGTAATGAGATTCAGGTGCTTCCTACACAAATGGGGAAACTTCTTGCATTACGTGAACTCAACATACGAAGAAACTGTCTACAAGTGTTACCAGATGagTTGTCCGATCTGCCATTGATTAGGTTGGATTTCTCCTGTAATAAAATCACAGAGATTCCCATATCTTACCTCAAACTTAAGCAGTTGCAGCACATCGTTCTTGACAACAACCCCATGCAGTCTCCTCCTGCCCAGatCTGCCTAAAGGGAAAGATCCACATCTTTAAGTATTTAAACCTGCAGGCATGTCGCCTGGATAAAAAACCAGACACGCTTGACTTGCCTTCTCTTGGAAAACGCTGCTTGCCTCAGCAGCTGACAGACAGTATGGAAGATTTCTATCCCAGTAAAAACCATGGCCCTGACTCAGGTATTGGCAGTGACAATGGTGACAAAAGACTGTCGACCACAGAGCCATCCGATGATGACACCATGAGTCTCCACTCTCAAGTATCTGAGACGGCGCGGGCAGACGCACACATACTTCTCACAAAGCTGGACTCAAACAAAGATCAGGACCCATATGACTTTATTGACCCAAACCCAGATGAAGAGGCCATTCTGTCTGAGGGAGATCTACAGCACAACGCACCCTATGTGTCATGCATAAAGGAGCTGGAGCGGGTTCTGAAAACGCACCAAAGCAAAGACAAAGAGAATTGGAAAGAGGAGTCAGGATCTGAGAAAGAGCAGTTAGCTGAAGAAGATGAGGATGACTTAAAGGAAGTGTTGGATCTAAGGAAGATCGCAGTACAACTTCTACAACAAGAGCAACAGAACAGGTTCCTCAGCCACTCAGGGAGTAGCACCAAACAAAGAACCCCATCTCAGACTGTTAGAAGTGCGTCACTAGATGAAGGAAGCAGCTCAGCCTCCGCCTTGAGTGGACAGCCTTCTTCATCTTGCTCGTTTGATGGAAGTTTGAAATCGGAGAGTAGTGACTCTGAGCCAAGATGGCCAGAGGTTCCTCCTGTGCTCAACCAAAATGAGGATCGGAGAAGAAACAAGTACCTGAGAAAAGACTACCTGAAGTACAAGTGCCAAAGTGCTCGAAGAAACTCCAGTGGCAATGACAATGATTGTGAGGAGGGAATGCGATCTAGTGACTTCACCACAACTCTGACTGTCTTTGGCCTGAAGCCCAGATCAGCCTTCTCCCGTGGAAATCGACAAGACTTCAGCTCCACAGACCCAAGCTTCACAATGAGGAGAAAGATGGAGCACCTCAGGGAGGAGATGGAGCAGATCAGACTCTTACGACAGAACCTCGAGTCTAGGCTAAAGGTTCTCTTGCCAGATGATGTGGGCGCTGCTTTGATGGATGGTGTTGTTTTATGCCATCTGGCTAATCACATTCGTCCTCGTTCTGTAGCTAGCATTCATGTACCATCCCCTGCTGTGCCAAAGCTGAGTATGGCCAAGTGTCGGCGGAATGTTGAGAATTTCTTGGATGCATGTAAAAAGCTTGGAGTGCCACAGGACAAGTTGTGTTTGCCGCATCACATCCTGGAGGAGCGAGGTCTAGTAAAGGTCGGTGTCACTGTACAGGCACTGCTGGATCTTCCTTCATCAAAACCCAACCAACTTTCTACCATGTAGCATCACTGGATCATGGGACGTCCACTAAGATCCCTTTACCCTGCCTTACCACCTCATCCTCACTCTCAATGCTGATCTTTGACCTACCATGGGGAGGTCACAAGCTTTTACCTTTCACAACTGCGGTGAACAAGCCGGCTTCCCCCTACCTCTTATAAGCCTCTGTGGAGGGGTCTAGACAGTTTAAAGCTCCAATATTGTACCCCATATGAGGGAAACTGTAATTCTTAAAGCCACACGCTTCATTCTGAGGGTTAACACCTGTTTCTATTCCACAACTGCAATGCAGACTCTCTCCTCTCGATGCTGGACACCTCTGTCTCCTGTCATTTGTATCTCCTTGTCATCTGTCTCACTCTTCTCTTGGACCGGTGAACCCCCAACGGGTGAGGACAGGAGAAAAGCCTGCAGCTATCTGGCTGATTCTGGATCGGATGTCACTCCAGCCCTCTCCTGTATGAAGTCACTAAGAGCTGTTTAACATCTTGTTACATCCTGACTTGTGTTTCCTGTCTCTTTGAAGAAATAAGTGGGTCAGAGACAGTATTGATGTGCATGTAATAACACCCAGACCAGCACCGAGGACATCAAGGACAGACAAAGGTGTTACCATAAATGTTGATTTATTGCAGTCAGGTGAGTCATTGGCGGTGCATTAGAAAGAAATCATATCTTTCTGCATGCCTGGACGGTTTTAATAATGAAGATTCTGCTCACAAGACAAAGgctttctttgtgttcttttACGTACATGCCAATGTTgccaaatgtttgtttttcttgactGTTTTCACACAGGTGGTATTTTAAGTTTTCACAGCCTGCATGTGCCAGAAAGTAACACTTCATAAAGTTTTGCACGTGCCAGTCTGTTTGCATTGTGCTATAATTTTGTTTGTTGTGCAGGTCTGGGCATGTACGTAAAGTTTCAGCACTAAAATaggtcatttaaaaacatttgcaaaagcTAATTGTAATTACAGAGTAAGAACAGTCCATTAACGAAAGATGGGCATTTGATTGtgtgattaaattaataattggcAATCAGAAATCAAATGATACTGGTAAAACTGAATTAAGTTAAGTAAAGGGTTTGACGTGCAGTGCATTCATCACAGTAAACTGTCAAGAGTtatagaaatgttaaaatatgtacaaattgttctcatttgtttgatcagggaatttatttatttgcctttatgtacttttgtatgttttatttattttatttttagttctaTTTACTTCTTTATCAACCTCAGAAATACATTAACTGTATTCTTCAAAATCAGCAATACTGTTCAGACATTCTTGAGTGTTATTCATCAATTTCCAAACATGGAAATTGGGGCAGCCATCTTAATGGGCTATAGCTTTGGAGGTTGCTTGCAGTCAGTTTCTTTATGGCACTGTTTACATGCACACCAGAAATCTGCTTATTGTGAGGAAGCTATTTTTAGATCAGATGCAAAATCAATGGTCTGATTTGTGTACAGAacagggatcctcaaatctggcTTGCGAGATCAACTTCCCTGCAGAACCAATCAAACTCACCCAAACCAGGTAATCATGTCTTTGAGATCAGAAAGTCCCAGTTAGGTaagtttgatcaaaaatagagctgaactgaaaatagttttttgcgAGCCGGATTTGAGGAATCCCTGGCATAGACTGTACATGTGGTGCATTAGTAACTGCTTTCTTCACACATTTACTTTACCGGACTTGCTAGTCAAGACAGCTCCATATTTAATTGGAAAAATGTGAGGAGTGAGGCAACAGGTAGGATAAAATATCTGCACAGTAATGTCCAAGGTAAAGACAAAAGAGTAATCCTTAAAAAAGGTTATGGTCAGGGCAGGCAGCAATTAATAGAAAACAAGGAAACAGTCCGGTGTGTGCATCTTAAATAGCCCTCCTGATATGAAGCGGGTGTCAACAGGTAATGAGTTCCTGGGCAGGGGGAACCTGGGAAATAGAGTCCAGGGTGAGTACGGTAAGGTTGGAGTGCCCTCTAGCACATGGACACTAGCTGTTAATTGTAacaccctgcatagacagcaacagaGCTACCATGTTCAAGTCCCAAAaaggacataaaataaaattaatccatgtgacatcagtggttcaacagtACTTGCTAAGAGAATATTTTTGTGCACACGCATTCGCTGTGGTACTCTCGTGAACATGCGCCAATGTctgatattattaaatgaattattattatatgaattattaaataaaggtttttttttcataaatgacAGTTAGGCTGATGTAACGTCTTTCCaacaaaataacttttactATACAAACTCCATAAAACAATTTCGAACATCAATTTCGAACATCTAAAAACTGTGTACCTTTATACAATCCAGACTGTAAGTTTTCATCCACTTTAAAGTCAGTATAGCATCTCACCTTACAGTGAATGTATATTACAACCGCAGAACTCTACAGCACCTCCACTTTGGGGACTGTTTGTAGCAAGTATCGCCATCATCACCAGtgggtgttttgtttgtttgtttgtttttgctttatttctacaaaaacaaaaaaatgtaatcctcTTTGCCACTCTTAACAAATTTTGTCAATCCCTCACTTCCGTGGGTGAGCTTAAAGCtttcttaaaaatttaaaaaatgcagtctCAAGTGGACGGTGCATGTAAACATGAATGCTGTTATGCGTTAACCCACTTTACGGAGTGGATGTAAGTACTGTAGGTTGAACAATTTCTATTTGTGACTGTTCGCCGTGCATtcctgtacattttttttttctcttttagtgCAGCTGTGGCTAACTAACCACTTCCAACATATCTTGAAAGTTAGCCTGCctgatgttattttaaagcgagaaaatgttgtttcttgatttatgccttttaaaatgtcactgcAAGCTCAGCTGTCAACAGCTGTTGACAACTTTTCTGTGGAAAGGAGTTTTAGGACCCAGATTTACAATGAGTAATGCCTCACTCCCATATCATGGGACAGCATAGCAGATACGTTTGGTTCAGTGCCAGAGCTTTGTGATGGATGAACTGGTGACAGCTTTTGCTCAGGCTTATTGCCTTCTGAACACAATCTcagccaaaaatataaaatgttttctacagGTTACAGGTCCCCttaaagaaatgcttttgttttggttttgcaCCCTCTAATTTAGTTGTTTAGCATCTGTATTTATGACACCATTTCCCAATTAGCTATCTGACTTTCATAATCTGCCAATGTCACCACTTGCATAACTCCTGCTACAAGAAAAAGCCTGCATACTGCATTctacagttttattaatattctacAGTATTCAGTATGCATCAATAATGATTGTACTGTAGCAGAGATAATTATTGTCATAAGACTATATGCTGAAACGGGTTTCATGACACTTATAGTTCATTTCGAGTGTGCATGTTTACAGTGTTCATAGAGAGgagtgtgttatttaaaaaaaaaaacatgttttgttttcctttcaccATCAAACTCAATCttggcaaaaataaatcactCGTCAGCTCTGATTCTTATCCATGTTGATGAGAAACTGTTCAGTTTGTAAAAAGATGTGttgattaaaaagtaatagACAGGGGATGCCTCCTACGCAGTGCgtactgtatatgtaaatgtttttgtatgacAACTGGAATGCATGTCTGGACCATACCATTATCCATGTACATAATCTACGTTTCAACACATTAGAATGTTTCCTTAAAAAGGAAACcagccaaaacatttaaaaaaatactgaaataaactgACCTTTTACAGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53457 lncRNA downstream 10969 13642526 ~ 13643325 (-) False LOC122345175
XR_006250978.1 lncRNA downstream 10980 13619026 ~ 13643314 (-) True LOC122345175
TU53448 lncRNA downstream 16971 13633670 ~ 13637323 (-) True G36279
TU53376 lncRNA downstream 90396 13562654 ~ 13563898 (-) True G36218
TU53385 lncRNA downstream 207175 13446621 ~ 13447119 (-) True G36227
TU53382 lncRNA upstream 8885 13708100 ~ 13711959 (-) True G36224
TU53473 lncRNA upstream 13465 13712680 ~ 13713420 (-) True G36297
TU53531 lncRNA upstream 119033 13818248 ~ 13819334 (-) True G36337
TU53602 lncRNA upstream 276137 13975352 ~ 13977070 (-) False G36385
TU53605 lncRNA upstream 276137 13975352 ~ 13977070 (-) True G36385
XM_043239038.1 mRNA downstream 1243 13646648 ~ 13653051 (-) True il13ra2
XM_043239040.1 mRNA downstream 1244 13646648 ~ 13653050 (-) False il13ra2
XM_043239039.1 mRNA downstream 1244 13646648 ~ 13653050 (-) False il13ra2
XM_043239037.1 mRNA downstream 35937 13612661 ~ 13618357 (-) True ftr84
XM_043240104.1 mRNA downstream 72004 13579320 ~ 13582290 (-) False h3f3c
XM_043238578.1 mRNA upstream 21566 13720781 ~ 13732483 (-) True wdr44
XM_043240423.1 mRNA upstream 146188 13845403 ~ 13848070 (-) True LOC122345901
XM_043240379.1 mRNA upstream 239426 13938641 ~ 13940216 (-) True chrm1b
XM_043239846.1 mRNA upstream 265940 13965155 ~ 13967827 (-) True LOC122345582
XM_043239548.1 mRNA upstream 288274 13987489 ~ 14000256 (-) True arhgap35b
TU53374 other downstream 72053 13579061 ~ 13582241 (-) True h3f3c
unassigned_transcript_955 other downstream 278594 13375629 ~ 13375700 (-) True trnap-agg_13
TU53125 other downstream 599437 13053844 ~ 13054857 (-) True G36047
TU52956 other downstream 1148336 12501914 ~ 12505958 (-) True G35936
TU52745 other downstream 1334609 12317803 ~ 12319685 (-) True G35825
TU53475 other upstream 17909 13717124 ~ 13718543 (-) True G36298
TU53529 other upstream 118527 13817742 ~ 13818942 (-) True G36336
unassigned_transcript_956 other upstream 139675 13838890 ~ 13838962 (-) True trnam-cau_26
unassigned_transcript_957 other upstream 145672 13844887 ~ 13844959 (-) True trnam-cau_27
TU53547 other upstream 147163 13846378 ~ 13848059 (-) False LOC122345901

Expression Profile