RNA id: XM_043239053.1


Basic Information

Item Value
RNA id XM_043239053.1
length 5209
RNA type mRNA
GC content 0.42
exon number 2
gene id ptger4b
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 12886229 ~ 12892279 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGGTGCTTCCCTAGAATAAAGCAAATACCCATCATGCAATCTGCTTTCACTGAATGACTTTTAATTACCGCTTATTGACTTTGGTCACAGAAGCattgaaaatgtaatacagCCACTTAGTCAGTTGCACCACCCTTCCAAACACAGACAGCTCAATCAACAAAAAAGCTGTATCTTAGGAGGTTTTATGTTTCACTAACTGCAGATTAAACGTCAATcgcagcagtggactgagctGGAAATTACGTCCAGAAAGTTAAACACATAAAGTGTGATGGAGGGTCATCGACCGACTCAGAGaataattaaatacagaatcaatgtttttaaaatactgctGCACTGTGAGTGTTGGATTCAATACCTGCACAGACATTCTCTAAGAGTGATGCTTGAGGAACATTTGACGCCATCCCCGATTGACCTGTTTTGCAATAGGTATCTTAGGAAACGGGGGTGCTTGCAACCTGTTTTCTCattattgtgtgtttaaaagaaaactccATTACTAGGTATTGAAtctttatatctcacaaatgTTACTTTTGTTTCACAGCTGcaagtttatttctttaaaattatacCTTATCCCACAAATGTGActtcatatctcacaatttttttgtagttgcaATTTCAGATCTTAATACAgtgttatatgtttatattgcAGTACAGTTTAagtataaatattgtaaatcaCTATCAGAAATGAAAAGAGATGCTCTTAGAACATTACCCTGTGTCAACGTCTGCTCTAAATTCAGACTGAAAGCGCAATCTTTAACTTGAAGAGTTTTTGATCTGGGCCTCTCATCATTCATTTCTTGTACGTGACATTCCTGTGAACTCTGCACCTAATGCGTGTACCTAATGGTCACCGACTTCCTTTGTAGCGACAAAGCTGTCacatcagaaatgcatttttccacATATAGAAACCTCATAGCAAACCACAATGTTTTCACTtcttataaatgcatgtaagcTGGTGCATGAATGGCTTTGAAAAAACTGCATCCGGTGTCGCCTGAGCAGATATCAGACGTCAGAAAGTAAAAGGTACACCGCAAGACAGCAACAAACAAATCCAGACACAACTAGTTTAATGACATTTCAAGTCTGAGTGAGTCATTGTTTTCAGAAAACCTTCCAGGTCATAGGCAAAACAGAAAGTATGAGAAAGTAATAGTGCTTAAGAGGTGGCACTATATTTTACAGTACGTGTACTTTGCTGGTACCTCCAGGCAAATGAGTGGTAAAATAAGGCGCTTGCCTGATGGTAAAACATAAGAAACACAGCTGAACTCCACAGCCGAACATGCATGGctattagtttatatatacagaGTGTGTTTAAGAACAGTCACTTACAGTTAGTGACCGTAACTAATTAGATACTTTACTCTACTTACTAATGTATATACATGGTTAATATGTAGCACTTGTGGGCAAGTGAATACAAACAGGCATGTCTTTACAGTATCTGTATATGCTAACTAATAAGACACATTACTGTAATGATATGTACAAGTTAATTGTCTtagcaccaaaaaaaaagtggcatatGTAGTAATAAAAAAGACACATACTGTACTTTGCCATGTACCAGGGAAGTACACGCACTGTAACATAAAGTGCTAACGGTTTAATTACCAGATAATCACCATATAATCACAATATGCTTAATCACCAGCAATTAGCAATTTAACCACCTTTCTTGCATTAGCAAAATGTGCTATTCCTGTTTTAACACATGTATTGCGGTGGCAGCATTTCCTTTCCGTAGAGTTATGCTTCTCCTGAAGGTGGctcaagaaaaaagaaacaatttttaaacagaaaaaccaaaaaaagataGAGAGGGCCAAATTTAGCTTTAACTGccattttgtgcaataaaaaataggacataaaagcataaatgtttcttttacaaAAATTCAGGAGAAACACAAAACCATCTTTAAATGACTCAGGCGTTATTTTGGCGAAGAAAGAGCAACGAGTGCGAATTACGTAGATAAATATTAGCCTCGTAGATATTTTATGCGGAGACATGTATGTGTCAACTTGCAGTGACAGGAGGGCGCAAGACTGCGGGGCGGAGTTGGCAGAAAGCTCTCAAGGAAGAACTTGCGAGGCAGTTTAGTGAGACTGAGGGCAACCGTGAGCTACACACCACTCAAAAACACAGGACTGAACTTTTGTACTTCTCTAAAACCGCGTGCGCGAGATTTTGGAAACGCGTAACCGCGTATCATCGTGGGATCTTTGACATCGATGGAGCAAGTCACGAACCTTGTACAGTGCGTCTGGAGCGCATGACTTAAACATCAACCtgcatgtaaaacaaaaactctgaagatgaacgaaacGTTACACAGTCCTCGTGGCCAGGACCCTACCATCCCGGCCATTATGTTCATATTTGGTGTGGTCGGCAACGTGATTGCTATTGTAGTGCTTCGAAAGTCGCGAAAAGAGCAAAAAGAGACCACTTTTTACACCCTGGTGTGTGGACTTGCCGTGACTGACCTCTTGGGAACTCTCCTCGCGAGCCCAGTCACCATTGCCACCTATGTGAAGGGAGAGTGGCCCGGCGGGGACGCACTGTGTCAGTATTCCGGATTCATTTTACTCTTATTCTCCTTGGCAGGTCTCAGTATTATCTGTGCCATGTCCGTCGAGAGGTACCTCGCCATCAATCACGCGTACTTCTACAACCACTACGTGGACCAGCGGGTGGCAGGCTTGACGCTCGCGGTGATCTATGTGTCCAACGCGCTCTTCTGCGCTCTTCCCAGCATGGGACTGGGATCCGTGGTGCGACAGCATCCAGGAACCTGGTGTTTCATTAACTGGCACAGCAACGACAGCTCGAACGCCACTTTCTCCTACATGTACGCTGGCTTCAGCTCCGTCCTCATCCTCGCCACGGTCCTCTGTAACGTGCTGGTGTGCACGGCTCTCATCATGATGCACAAGCGCTTCGTGCGCAGGACCTCGCTGGGGACGGACCAGGCTCGAGTCGCGGAGATCAGGCGCAGGCGGAGTTTCGCGCGTCTGGCCGGAGCGGAGATCCAGATGGTCATCCTTCTCATAGCCACGTCCATTGTCGTCCTCATCTGTTCAATTCCTTTAGTGGTGCAGGTGTTTGTAAACCAGCTGTATAATTTTCAGAGAGGCGCAACAGAAAATCTGAAGACAGACCTTAATGCCATCCGAATCGCCTCTGTCAACCCCATTCTGGATCCCTGGATCTACATCCTGGTGAGAAAGACAGTTGTGCAGAAGATTCTAGAAAAGATCAAGTGCCTCTTCTGCCGTATCGGTGGGAGGAGACACGGGAGGAGCACTATGGACTTCCACTGCGGTAACAGCATCCACAACTCATCGGTCATGTCTCGTGATTTGCCGTCGCTAGCACTGCCCGAGCTGCCAGAGGCGATCAGCGCATCGCAGATGTACCTGTATCCCATGGAGGTGGGACAGGAAATGGGCTGCTGCGGCGGCTCTGTGCAGAGCAGGACGTGTTCGACTTCAACCGAGGAAACCGTCCTGAGGGACTCTCAGGTGGTAGAACTCGGCAGTGGAGAAAACAGGACGGAAACGCACTTTGTGAAATCACATCCGTGCACGCACTCCAACACGAATGAAGCTCAGTGTTCCAAGCACCAGCCGCTGCAGGTCACCTTTACAGATGAGACTTTGAGCTTACAAGAGAGAATTATATGACGCATGCTGAAAAACTTGCTTAGTTCAGCAGAACGATGCGTCTGGAGAAGAAATACATTTCAAGAACTCGATGTGAGTGTCGTGAATGGAAtcagaacaacaacaaaggagACTAAGgactaaaaagaaaagattaatAGAAAGACTGAGCAAAGGACTAAACTTGGTGCAAGAAAAAACAACGTGGTTATAAATGTGGctcaaaacatgcaaaaaataaaaactgcatgatGGGGCTTTGGAAAGAGTGAAAGGGGcagagaaagatggagaggCAAACTGGCCTCGTTTTCTGATAATAACtcagaatgcattttaaaaatagatggGTTTTGTTGAGCAACAGGTTATGCTGACTGTGtctttaatttattgtaaattctTCTGAATTTCTGATGAAAAGTCCTTCTTTATCAGATGAATACAGTTccatttgttcctgaatgacTGATTTGATTGACTTGGTCAAATCTCGATTAGACGGACGACCATTTGAGCGAATATTTACCACCCTGCTTCAAGTTCCCTTTTTGCAGATTCCGCTGAGATTTCTAGTGGGTCACAAGTTCAAGTAACCGGAGTACCCTGTTAGCTTTCTTTTGTGAGGGAACTCGTGGGTTAAAATATGTCCCTTATGTTAAAGTGACCAAACTTTAACTTTTCATTTGCATTGGCGCAAAAACAACAGTCCACTATTTCAAACTTACATAAGATGTAGCTTAATGTACATTCTTTGGAAATTCCATAATGTGTACGATATTCTGTGAATTAACCAAACATTTCATATCCATGTTTACTGAGAGCAACGCCATCACAAAATACAGAGGTACCCGAAAACTCGTCATGCAATGTAAGAGCACATGATATACAGCACATTActaataattgttgtttcttttaatgTATGTGTAGATGATAGAATGTATAGTGAGGAGATGAATTTGTAAAAGCTATTAAGATGTTGAATGTCTTTTAAGGTTGTACGTTTTGCACTTTTGAATCCTTTTAACCACTGAAAAATATCTGAACTGTCACTATCAGTCAGTGGTCAATGATGAGGAACCGTTGAGTTCACCTGTACATACTCGTGATGTTAAAATGTGAATGCTGTCttgctttaatttattgtaGTCTTTTTAGACAATCTGTGGACTAGTTATTATTTCTTCTCTGTGAGAAGGTCAAGTTTGAGATGGCTCTACTCGTTGAAGCAGTTATAtggtttttgtttcatttcacaTTCCTTATGAGAATCAAAACAGTGTAAGGCATGATTTAAGCTACTTGGCATCATAATCTGCTGCGTGTATATAAATGATTCAACATTACGGtgtatatttttaccattttattttcacattttcaaacagACAGATGTCGTCTAGGTCTTACTCTTGATGTGACCCTCCAGAATGTGCAATTGCCAGCTATTTTATGCTGAAATAAACTCTGAagacaaaatagaaaaaaa

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004957 prostaglandin E receptor activity molecular_function

KEGG:

id description
K04261 PTGER4; prostaglandin E receptor 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52892 lncRNA upstream 295 12885331 ~ 12885934 (+) True G35905
TU52891 lncRNA upstream 945 12885005 ~ 12885284 (+) True G35904
TU52890 lncRNA upstream 3717 12882260 ~ 12882512 (+) True G35903
TU52809 lncRNA upstream 117679 12767948 ~ 12768550 (+) True G35847
TU52802 lncRNA upstream 214023 12567184 ~ 12672206 (+) True G35843
TU53143 lncRNA downstream 216353 13108632 ~ 13108853 (+) True G36062
XR_006251001.1 lncRNA downstream 407476 13299755 ~ 13312652 (+) True LOC122345423
TU53187 lncRNA downstream 407530 13299809 ~ 13311692 (+) False LOC122345423
TU53198 lncRNA downstream 419782 13312061 ~ 13312385 (+) False LOC122345423
TU53205 lncRNA downstream 431754 13324033 ~ 13324383 (+) True G36109
XM_043238450.1 mRNA upstream 56625 12826590 ~ 12829604 (+) True pxmp2
XM_043240737.1 mRNA upstream 60051 12820655 ~ 12826178 (+) False usp30
XM_043239689.1 mRNA downstream 20376 12912655 ~ 12916020 (+) True fbp1b
XM_043239690.1 mRNA downstream 23891 12916170 ~ 12926498 (+) True erlin2
XM_043239691.1 mRNA downstream 23891 12916170 ~ 12926498 (+) False erlin2
XM_043239686.1 mRNA downstream 37944 12930223 ~ 12935152 (+) False ch25hl3
XM_043239687.1 mRNA downstream 37945 12930224 ~ 12933333 (+) True ch25hl3
XR_006251084.1 other upstream 79013 12803952 ~ 12807216 (+) False LOC122346073
TU52846 other upstream 180988 12703371 ~ 12705241 (+) False iscu
TU52818 other upstream 370121 12514076 ~ 12516108 (+) False si:ch211-225b11.4
TU52593 other upstream 630557 12249138 ~ 12255672 (+) True G35720
TU53623 other downstream 1091818 13984097 ~ 13985706 (+) True ins
TU53776 other downstream 1398141 14290420 ~ 14292500 (+) True G36495
XR_006250972.1 other downstream 1407764 14300043 ~ 14305304 (+) True LOC122345142
XR_006250973.1 other downstream 1407764 14300043 ~ 14305304 (+) False LOC122345142
TU54000 other downstream 1755210 14647489 ~ 14651911 (+) False fgf5

Expression Profile