RNA id: XM_043239067.1


Basic Information

Item Value
RNA id XM_043239067.1
length 3543
RNA type mRNA
GC content 0.46
exon number 18
gene id rabl6b
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 9798294 ~ 9808373 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGCCTTGGTTTTTCAGCCGACCTCCTatccagacttttattttgaaattaaatcttCGTGAGTAACAGAAGCACTTGAACGAGGGTCTTGTGATGCTGGACTGCAGCAGCTGTATCATTCTTTGGAAGAGGATCCAGAGATGAGCATGTTCTGAGATGTTATGCTGTGCCAAAGCAGGACTCATTCACCTCTCAAACTAGAGTAGAAATGCTTCATGAGCGTTGCGAGACTGTCCGCCTGGGGACATCATAGAAGCCTATTTAAGACAAGAATATTAAATACCTGCAATATACATCTAGAAGCATAGTTTGGTCAAGATGTTTTCCGCTCTGAAGAAGCTCGTTGGCTCTGAGCCTGGTGGTCAGGTAAAGGACAAGAACATCCCTGCTGGCCTGCAGTCAATGAACCAGAGTCTGCAGAGAAGATTTGCTAAAGGGGTTCAATACAACATGAAGATAGTTATTCGAGGAGATAGAAACACTGGAAAAAGCACCTTGTGGCATCGGCTGCAGGGTAAGAAGTTCCAGGAAGAGTACCTACCCACTCAGGAGATCCAGGTCACTAGCATTCACTGGAATTACAAAACTACTGATGATGTGGTGAAGGTAGAGGTTTGGGATGTGGTGGATAAAGGCCAAAAAATCCCCCTTCCAGAAGGTGTAGGAAAGGGGAAAAAGAGAGGAGAAACCTTGAAGTTGGAGAATGAACCTCAAGAGCAGACGGAGAGTGAACTGGCGTTGGATGCTGAGTTTTTGGATGTGTATAAGAACTGCAACGGTGTGATCTTGATGTTTGACATCACCAAGCAGTGGACTTATAATTACATTCTGCGAGAGTTGCCTAAGGTGCCCACTCATGTGCCTGTGTGCGTGCTCGGAAATTACCGGGACATGGGAGAACACAGAGTCGTTTTGCCTGATGACATCCGTGACTTCATTGCTGGCCTTAACAGACCCCTCGGTTCCTCTTACATCCATTATGCAGAATCTTCCATGAAGAATGgttttggtttaaaatatttgcacagATTTTTCAACATTCCATTCTTGCAGCTTCAGAGAGAGACCCTGTTACGACAGCTAGAGACCAATCAGTTGGACATCGATGCCACACTAGAGGAGCTAACAGTTCAGCAGGAGACAGAAGACCAGAATTATGATATATTCCTGGAAATGAAAGACTCTCGTAGTAAAGGCTACAGCTCTCCCGGCCCTGCTAACGGACAGAGCCCCTCCTCAGGCTCGCAGTCTCCCGTCGTTCCTCAGAGCGGATGCTCCACCAGCAGCTCCAGCCCCTGCAGCCCCCAGCAGCCTCCCATTCCCTCCCAGGCTCAGAAGTCTCCATCCCCCTCTCCGTCCCCTTCTCCTCCCCCCCTCTCCTCAACCCAAGCGGCTGTGACCTCTCCCTCCCCTTCCCCTGCTCACCCCGGCCCGGCGGTCTCTGCTCCAGCTCAGGCTTCTGCCTCTGCTCCTCAAACCCAGAAACGCAGCTTCATCTCCCGGCTCTTTGGCTCCGCTCCCGCCCAGGATCCTCCAGCAGTCGCCCAGGAGCCAGATCCAGTATCTGCAGCGGCTCCGCCTACAGTTCAGAGCGTGGATGATTTTGTGCCAGACGAGGGACTAGACAAAAGCTTCTTGGAGGACAGTGTCCCTTCTAACCCAAAACCAGCTATGAACACCCAGCCCTCTGCCGCGGGCCCTGCAGATAGTGACAGtgatgGGGAAGGAAAAGACGGGAACCCAATGGTCGCTGGGTTCCAGGATGATTTGGACCCTGATGAGGCAGAACTTGATCCCGGAGTGTCTGTCTCCGCTAAAGAGTTGAACGTCACTCTCTCCAGTGATGAGGAGGGTCCAAACCCTTCTCTAGCTCAGGATGAAGATCTAAAACCTGAACCTCACCCGGTGGCAATGGATTCATTATCACTGGAGAACAAACCAAAACCTGTCCACAAAGAGCCATTGGTCCAGGCCCAGGAGAGTGTCAGCAGTACGATCCTAGAGGCTTCCGTTCTTACTCCAGCCCGGTACCCAACACGCCCACAGCACACAGCGCCAGAAGCAAGAGCCCCGTCAGCTTCCCAAACACAGGTTgtaaaaccaaaagaaaaaccAGCTCCTGCAGAGCTCTCTGACACAGACCCAGACGAGCCTGTGGCCAAACAGATGCTTTCATTCGTCATGGATGACCCTGACTTTGAGAGCGAGGAGGAAGTCATGCAAAAAGTGAATAAGGAATCTTTCCCAGTTCGAGATGATATTCCTGATCTATCTGATGACGACATCACCGCAGCTCAAATTCCTGAGCCCATGAAACCTACTGTAGTTTCCTTTAAAAGCAAGAATGACGGTGACCTCTTTGGTCTGGGAATCGAGGAAAAGTCCATCAAAAGCAAAGACAGCAGCGAGGAACAAGATGaaaaagaaagcaaacattccaaggaaaagaagaaaaagaaaaagaggagtaAAGAgGATGACGACAAAAGCggcaagaaaaaacacaaacacaagaaaaaggaaagagatGAGGCAGGTGTGACTGCAGATGAAaaggagaagagaaaaagaaagtcacGAAGCAAGAAAACCGATGATCTTGAAGCTTTTCTGGCTGGAGAAGAAGGCTCAGCAAAAAGAGAGGAGGGCGACTATGAGGAACTGTAACTCCCTCTCTGCTAAAGAAATGTTTGTGCATCGATAACCACAAGCATGAAAACTTTCTCATCAAAAcccacaaaaacacatgctttCTTCAGCAGCCCGAAATGTGATGGTGTGTTGATCTGAGAGACAGATTATGAAACGCTTCACACTGGTTTTCCGTGTCCTACAAACTTGCCAAATTATGGCCGCCGTAGTTCGTACTCTTTGGGCTCAAACTGCAATAAGTGGAAAAGCCATGCAAAATTGTTACTTGCACGTATTTAGACCTTTTACGTTTTTCTTTCGGATTGAAATGGACCATTTTCAGTCACAACATTGTGTTTTCTGAATGTTTACATGCTGGCTTTTATATGGTTGCAATATTTTTGTCATCACACGTGTGAACCACTACCACTCAGATACAATGTTTTTCGTCGATTTTATTGCTTCATTAGTTGCCTTGTGTATGTGGATGAATTGGTATTTATGCTCAATAGATGTACTGAGTGCTTGGCTTTGTGTAGTTTTGCCGTGTGTTtagtgtttgaaataaatatactgtatttcaCGGTAGGATTATTcgttttttgcaaaaatatataaagaaaactattttagaaatgtaaaagattTTGGTCAATAAATGCACTCGTGATGCTGAGTAGTTACGACATAACAGACGTTGTTTTCGCATCTTCAAATCAGGAAATGCCTTAAAAGAAACCATAGTGAAAATGCAAGACTTTATAGAGCTCAAATAGACTAGTTGAAATATGCTTGTATAAAAACAATGAGATCTATCTACTGTGTAATTAtgcaaaattgtgttttagagtttttttatttgtaattatgccATTCTGAATTTTTGCACTCCATCGTATTTGTCTACCTTATT

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005525 GTP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51347 lncRNA downstream 20056 9777633 ~ 9778238 (-) True G34877
TU51341 lncRNA downstream 31687 9766268 ~ 9766607 (-) True G34871
TU51339 lncRNA downstream 33762 9764073 ~ 9764532 (-) True G34869
TU51125 lncRNA downstream 550253 9246920 ~ 9248041 (-) True G34704
TU50983 lncRNA downstream 737480 9013306 ~ 9060814 (-) True G34594
TU51619 lncRNA upstream 473036 10281409 ~ 10296141 (-) True G35035
TU51637 lncRNA upstream 529374 10337747 ~ 10341167 (-) True G35047
TU51725 lncRNA upstream 570393 10378766 ~ 10378998 (-) True G35107
TU51762 lncRNA upstream 704557 10512930 ~ 10513285 (-) True G35139
TU51766 lncRNA upstream 708298 10516671 ~ 10517342 (-) True G35142
XM_043238424.1 mRNA downstream 2261 9792187 ~ 9796033 (-) True imp4
XM_043239701.1 mRNA downstream 6560 9780838 ~ 9791734 (-) False araf
XM_043239700.1 mRNA downstream 6560 9780838 ~ 9791734 (-) True araf
XM_043240165.1 mRNA downstream 40461 9754034 ~ 9757833 (-) False tbx3b
XM_043240164.1 mRNA downstream 40461 9754034 ~ 9757833 (-) True tbx3b
XM_043239068.1 mRNA upstream 496 9808869 ~ 9813130 (-) True tcn2
XM_043240797.1 mRNA upstream 8495 9816868 ~ 9829040 (-) False si:ch211-102c2.8
XM_043240796.1 mRNA upstream 8495 9816868 ~ 9829039 (-) True si:ch211-102c2.8
XM_043240798.1 mRNA upstream 8495 9816868 ~ 9829038 (-) False si:ch211-102c2.8
XM_043240109.1 mRNA upstream 23626 9831999 ~ 9841079 (-) True tmem150aa
TU51236 other downstream 395671 9337828 ~ 9402623 (-) True G34789
TU51091 other downstream 577787 9215508 ~ 9220507 (-) False vamp5
TU50964 other downstream 868241 8929470 ~ 8930053 (-) True G34580
TU50888 other downstream 1120576 8674549 ~ 8677718 (-) False LOC122345093
TU50638 other downstream 1366719 8429700 ~ 8431575 (-) True timm8b
XR_006251099.1 other upstream 516742 10325115 ~ 10335342 (-) False si:dkey-96l17.6
TU51745 other upstream 652835 10461208 ~ 10461709 (-) True G35122
TU52098 other upstream 1059991 10868364 ~ 10874064 (-) True G35371
TU52116 other upstream 1115554 10923927 ~ 10926163 (-) True G35384
TU52323 other upstream 1611582 11419955 ~ 11467122 (-) False hmgn7

Expression Profile