RNA id: XM_043239087.1


Basic Information

Item Value
RNA id XM_043239087.1
length 3843
RNA type mRNA
GC content 0.48
exon number 15
gene id slc12a9
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 14130798 ~ 14140051 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CACATGGGCGCTTCCTCTGTCccgtgacttttttttttttttttaaacaaactgagGGGCAGGCGGGACGGTCCAGCCGTGCTGCGTCAGGTCCACGGGAGACACGACAGCGCGCTCCTCGCCGGCCGTCATGTCCCGGGGGTTTGACGATCACGAGATCTGAGGCTGCAGACGAAGAAAACTTTCCACCTGCGATTCTTTAAAGAAACGAAACCAACTCGATACGATGCTCTGGTGAAACGTCTGTTTCAGGACATCCTGCATCTACGTTGTCAAAACGAGTAGTTTGCGGTTTGTGTTGTTTCTTCCTAAAAGCGGAAGTTACATACCGCTTTTCGATTGGCGTCGCCGCCGCTGTTGTTCATAAGGGCAGACCATGGCAAACGAGCACTCTCCTCTTCTTGTTCACGGGGTGTACAGCATGATGGGTGATGCTGAAGACTCCAGGGCCAGACCAGCAGAGACAGGAGAGGCATCCCCCAAATCAAACCCCCGTAAACTCAACACCTTCTTTGGCGTCATGGTGCCCACCATCCTCTCCATGTTCAGTATTGTGCTCTTTCTTCGCACGGGTTTTGTTGTGGGTCATGCTGGTCTTCTCCACGGCCTCTTAATGCTGTTTGTGGCCTACTTCATCATCTCCTTGACAATCCTGTCTATATGTGCTATTTCAACTAATGGTGCTGTGGAAGGAGGCGGGGCCTACTTCATGATCAGTCGTTCTCTGGGTCCAGAGTTTGGAGGCAGTATCGGCCTGATGTTTTACCTGGCGAAGGTATGTGCGTGTGGCGTTTATGTACTTGGTCTGGTGGAGGCCATACTGGACGTCTTTGGCAAGGATCCAGGCTCTGCTGTGTCACATGACCTGCGTGTTTTGCCACAGGGTTACTGGTACACCGTGCTGTACTCCTCTTTAGTGCTGTTGCTATGTCTGGTGGTGTGTCTGGTTGGTGCTCACATCTACGCCAAAGCCTCTTTTATCATTCTGCTGGTGGTGACGGTGTCCCTGATCTCTATCATCATCAGCCCCCTGATACTCAGTCCACAGCACTTCAACATCACACACACGTACGGCAACAACCACACCGTCACTGTCAGCCCCAGCTACACAGGCTTCAACGGCACTACTTTGAAAAACAACCTCGGACCACACTACTCTTTGGACTACAGTACCAACACAATGATGTCTTTCGCCACTGTCTTTGCTGTGATGTTCACCAGCTGCACAGGCATCATGGCAGGAGCCAACATGTCGGGTGAGCTGAAGAACCCCAGTGAGTCAATACCTAAAGGGACCATTATGGCGGTGTCATACACCTTCACTGTCTACGTGCTTCTCTTCCTGCTGCTGAGCTCCACCTGCGACAGgtTGTTGTTAATCAATGATTACGCAGTGTTTCAGCGTGTGAACGTGTGGCCTCCGTTCGTGACCATTGGAGTGTACTGCGCGTCTCTCTCAGCTGCTATGTGCTCCATGATAGGTGCTTCTCGAATCCTCCATGCGCTTGCTCTGGACCAGCTTTTTGGTCTGCCTCTGGCTCCGGCTACAGTCACGTCCAGCTCTGGGAACCCATGGGTGTCTGTGCTCTACACCTGGGGTCTGGTGCAGtGTACACTGTTTGCAGGACAGCTGAATGTGATAGCTGGTATTGTGACAGTGTTTTACCTGCTAGCGTATGCAGCTGTTGATTTGGCCTGTCTGGCTCTGGAATGGGCCTCTGCTCCAAACTTCAGGccaacatttcagtttttctcttgGCACACATGTTTGCTGGGTATTATAAGCTGTCTGGTAATGATGTTCGTAATAAACCCAGTGTATTCCTCAGCCAGTATAGTACTGCTTCTGTTACTTCTTCTGTTCCTGCACTACCGCTCTCCCACCAGCAGCTGGGGCTACATCAGCCAAGCTCTTATCTTCCATCAGgtgaGGAAATACCTTCTGATGTTAGACTCCCGTAAGGATCATGTCAAGTTCTGGCGGCCTCAGGTCTTGCTGATGGTGGCAAACCCACGCTCCTCCTGTCAGCTCATCTGCTTTGTCAACCAGCTGAAGAAAGGAGGGCTGTTTGTCCTTGGGCATGTGCAGATTGGAGATCTGGATGCATTGCCAGCAGACCCGGTGCAGCCACAGTATAATTTCTGGTTGAGTTTAGTGGATAAGTTGGGTGTAAAAGCCTTTGTGGATCTgactctctctccgtctgtcaGGCAAGGCACTCAGCATCTGCTCCGCATTACTGGACTAGgAGGCATGAAGCCTAATACTCTGGTCCTTGGCTTCTATGACAACTGCTATCCAGAAGACTACTTCCTGCAGGACCCAGTCTTTTGTGAGGGTGATAGGGGTGAGGGGGATAATTTCGGTGTGGACCTCCCATCATTACAGGCTCATTTTCCACCGGTGCGCCATGCTGAGAGCCCTCGTGCTCTGCAGCCTGAGGAGTATGTGAGCATCATCCAAGATGCCATAAAAATGGGCAAGAACATTTGTTTAGGCCGTTATTTTTACCAGCTACCACCTGAGACCAAAGGCATAAATTATATGAGGGCAAATGACAACATGGACACCATTGACGTGTGGCCGACCAACCTGCTCTCCCCAGGCACCGCCAGTTACGCAGATGTGTCCAGTCTTTTCCTGCTTCAGATGGCGTGTGTCTTAAACATGGCCAACAGGTGGCGCCGTGCAAGGTTGCGTATATTTGTCTGTGTGGAGTCCGAATCGGGTGACCAGGGCTGGCTGGCCAAAGAGGAGCAGTTTAGAGATTTGCTGGGAAAGCTGAGGATTCGTGCCGCTATTAAGATTGTGGCGTGGGATAACGTGGTGCGCATGTGTAGGGGGCCGAAGCCTGAGGGTCAGAAAGTGACAGAAGACTTCCTGTGTGCCGCGAATGCCCTTCTGAGGGAACACAGCTCTACGGCAGCAGTCCGCTTCCTGTATTTGCCCCACCCTCCCTCCAATTCCCAGCTGTCACAGCAGTACCTGACACAGCTGGACACGCTGACACGAGACCTGGGCCCGACTCTCTTGATTCACGGGGTCACGCCGGTGACATGCACTGAACTCTGAAAAACCGTAACCAAATTGTTTTTGTATGATAGGGGACCTCTGGAATGTTACTGAGAGTGTAAAACGAGTATATTTGATTACTGATATTCTCAAATGGTGAATGATTTTGAGGACCAAACATCATAAACTGGTAAAATATGTTCTCTTGGTAAACGGATAGCAGGTGTGTTTTGGGTTAATGGGTAAATACTGCCAAtcattatataatgcatttatttttgtgttctcaatttttttttttttacgttaagTTCAGTGTTGGTGGTGAGTGCTTGCATATGTTGCgattcatgtttgtttgtgcaaGATACCGCATATGGAAAAAAGTCATTGAAAGAGGTCTTAAATGAGATATGGTTACAGTTGGCACAGTAATAGGGCAGAGTGAGTCAGTTTACtcactttttgtttgttgtttattattgtaatgcacTCTTGGAGAATTTTGTTAATCATTTCTGCGTtccttgattaaaaaaaacaggcccTTTGCACCCCTTTTGTCCCAGTTAGAGCTTGTGATCAGTTAAGGACCCCTTATTTTTGGCCATGGAAGAATTACTGTTCTCAACTTTTGCATTTAGAGCTCTTTCATTGGATTTATGCATTCATAGtgtattttctgtcattttgccATTCATATAgacatgttatttattattattacatttgtgtttgtgtatacaaGTAAGTCTTCTTGTGCACTAGTTTTCGTTCAGTCTGGATTTCATATTGTGTGCCTCAAGAAATTGCCCTGACTATTTGCATTA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53602 lncRNA downstream 153728 13975352 ~ 13977070 (-) False G36385
TU53605 lncRNA downstream 153728 13975352 ~ 13977070 (-) True G36385
TU53610 lncRNA downstream 153728 13975352 ~ 13977070 (-) False G36385
TU53531 lncRNA downstream 311464 13818248 ~ 13819334 (-) True G36337
TU53473 lncRNA downstream 417378 13712680 ~ 13713420 (-) True G36297
TU53878 lncRNA upstream 136045 14276096 ~ 14310067 (-) True G36541
TU53857 lncRNA upstream 139623 14279674 ~ 14282516 (-) True znhit1
TU53914 lncRNA upstream 170573 14310624 ~ 14310860 (-) True G36561
TU53915 lncRNA upstream 170911 14310962 ~ 14311328 (-) True G36562
TU53864 lncRNA upstream 171717 14311768 ~ 14320994 (-) True G36537
XM_043239084.1 mRNA downstream 18722 14100492 ~ 14112076 (-) False gucy2d
XM_043239083.1 mRNA downstream 18722 14100492 ~ 14112076 (-) True gucy2d
XM_043239094.1 mRNA downstream 30985 14094578 ~ 14099813 (-) True si:ch211-284e13.6
XM_043239096.1 mRNA downstream 36756 14089145 ~ 14094042 (-) False LOC122345200
XM_043239095.1 mRNA downstream 36779 14091966 ~ 14094019 (-) True LOC122345200
XM_043239091.1 mRNA upstream 191 14140242 ~ 14143791 (-) False LOC122345196
XM_043239090.1 mRNA upstream 191 14140242 ~ 14143791 (-) True LOC122345196
XM_043240386.1 mRNA upstream 16472 14156523 ~ 14190472 (-) False mink1
XM_043240384.1 mRNA upstream 16472 14156523 ~ 14190472 (-) False mink1
XM_043240385.1 mRNA upstream 16472 14156523 ~ 14190472 (-) False mink1
XR_006250968.1 other downstream 74093 14045477 ~ 14056705 (-) False rnf214
XR_006250967.1 other downstream 74093 14045477 ~ 14056705 (-) True rnf214
XR_006251003.1 other downstream 121262 14001934 ~ 14009536 (-) False tmprss13b
XR_006251004.1 other downstream 121262 14003214 ~ 14009536 (-) False tmprss13b
TU53547 other downstream 282739 13846378 ~ 13848059 (-) False LOC122345901
TU53907 other upstream 152012 14292063 ~ 14302381 (-) True LOC122345141
XR_006251010.1 other upstream 1065900 15205951 ~ 15264945 (-) False pdzd2
XR_006250970.1 other upstream 1155967 15296018 ~ 15308440 (-) False zfr
XR_006251075.1 other upstream 1209965 15350016 ~ 15367413 (-) False npr3
TU54482 other upstream 1433060 15573111 ~ 15574817 (-) False alkbh2

Expression Profile