RNA id: XM_043239098.1


Basic Information

Item Value
RNA id XM_043239098.1
length 4273
RNA type mRNA
GC content 0.48
exon number 7
gene id si:dkey-112e17.1
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 4927327 ~ 4947953 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCGGTCGTGAACGCGCACCGCCAGACCTCCGCTGCCGCTGCGTGCGCGCCCCCGCGCTCCCTCAGGTGaatggagagagggagaggagtcCTGCGCGCGTCTGCAGCCGAGCTCAAGTCACTAAAATGGGGCTTCGCGGACCGAGCAGCACGGGGGTGTTTCTGACAGTCTGCCTTCTCTGGGTGACTGGATGCTGCACCCAAAAAgTTTACTTTGATTGTGGAGCCAAGGTGGATGTTGTGGACGTGCAGGGCCTCATTCTGTCCCCTGGCTTCCCATATAACTACTCATCCGGAACTCACTGCGTGTGGCAGTTCTTTGTACCTGTTGGTCACCAGCTAATCATGGAGATGTTTGACTTCGATGTCTTTGAGAGTCACGACAGTCCCACCACATCTGCTGCCGTCGTGGACGAGCTATCCAACGACGGTGGAGCTCTGGTATCCAAAAGCCTCGGAAGTCCAAAAGAACCCCAGTCCACGCACCGAGAGGACGTCAAGCAAGTGGTGATCCAAGAACAGTCCACCAAAATGGAGATGACCAAAGTTTCCAATTCCGCCAAAATGCTTTCCGATTCCCCCTTGGCTCCGCAAGCGTCTCTTCCAGTTGAGAACCGAAATTCAGTTTCCTCTCAGGCATCAAGAGCCGCCGTTGACTTTGTCTCCTCAAGCCCACGTACGGCCACAGACACCGTGAGCCCTGAGACCCAGCCACCTTTAATCGATGCCTGTCCCCACGATGTTCTCTACATATCAGATCTCATCACCTTCTCCTCCCGATTCTGCGGCTCTAGACGGCCTTCTAGCAGCCAGTTAGTGTTTGGATCTGATGACGACATGGTGGAGGTCATTATGGAGTTGATTACCACTACCCACTGGGGCCGTGGTTTCGCTCTTCTTTTCCATTATCAGAATCAAAGTAAGGCAGCCACAAGCGAACATCAGAGGTCACTTTTGACCTCGGACAGCAGAACTGGTGCACTGCTCGGTGCTGTAAGTGGAACAGTTGTTTTTGCTGTGGCCCTTGCTGGCACCCTTTGTGCGATTTTCAGGCCGAAACTATGTGCAAAAGGAGCCAACGCTTCCTCTTCCATCAGCTCAGAGGTTCCAGAAGGAGTGCTAAATTCAGCAGCAGATGTGAGTGAACTGCAGATGGTTTCTCCCAATCACTCGGAGCAGCGGCCGCTTTCAGCGAACGACAACAACAACCGTTCCTTCAACCGCAGTCTGTCCCATACAGGGTCTTCGGTGAACGGGGCGTGCGACGTGTCGGAGAAGGCCGCTCTGGAGCAGTTCTCCGGCGGTCTGGCCGAGTTGGAGCTGGGCACAGATGAGGTTTTTGTCATCGCCTCAGCGCCCGACTCAGCCCAGCTGCCCTTCTCTCCACACACCCAGCGAGAGCGCTTCCTGAGACACAGCGACACGGGCCCCAGCCGTCCCTTCGACTGGTCCACTCCAGTGCAAGCGCAGAGCGGTCAGGCCGGATCCACGAGCAGCACACGGCCGCGAGCTTGGAGCGTCCGAACCTTCCAGGATCTcctccctcctcttcctcagctCCATAAGAAATGGTGCAGCTGGAACTCTACCAGCCCTTTCACCAAGCTGGTGGACAGCGGACTCCCGAGCACCGCTCCAGACTCCGGAAGGGGAAAGGTCCTGTCCGCCGGTGCCACCGGCTGTCAGTCGGACTCGTTCACGAGTAACGCCTCTTACCCCTTGACTCAGCCCGGTCAGCGCCAGCGCCGCCTCAACTCCACCAGCAACCTCAGACGCTCCCGCTTCACCGCTCCCTGCTTCGGCCTGCTCTCCGGCGCATCCGAGTCCTCCAAAGCACACGCCAACGGAACCACGGCTCCAAACGCGCTCTCGGACGCCGGCAGCGGCGCCCCGGCCGGCCAGctgcaggtcaaaggtcaaataTCAAGCGTTGAGGACGACCACGTCACCGTGCCGGTGTTCGCCATCTCAGAAGAGGAAGACCGACAGCCTCTAGTCTCCGCGGAGAAGCCTCTGCGGATGAACGGACAGATGTTTGAAGGCACAAAGATGCCTCTGCTATCCCAAGCTCCCGGCGTCCAGCCGAGCTCCTCAGCGAGGGCCgcgcggcggcggcggcgcCATGGAAACGCAGAATCCTTCGACCTTTTCGTGTTAACAGTGACTCAGAAACGAAGTCCGCCGGTGATGGTCACGTGACCAAACCAGCCAATAAATGATCTCAACAGGACTGAATATCAAATGGGTTTATGAATATTGGCGTGAACGAAAAATGAAAGCACTTATTGTTCTTTGCGTTCTTGTATCTGCACGTTTAATTCGCTAAGTATAAAAGCACCGTCTAACAGTGCGTTACCtgcaaatgcatgtaaatgagaAACGTTTAACCAAGATCACTTAATTTTTCTACTCACTACTGAGAGTTTCGAGCTGTAGATTGTTACTTTCATTATGAAATTCCATGTATCTGCTCTACGAATAATACAGCTTGTTCTAATCCCTTTGCAAGCTGTAGACGACCAATTAGCTGGTCTGCTAGAAAGCTGCTTGGCATCTCGCTTGACTTCCACATGTTTTGTAATTCACTATGGGTCCAATACACATTTTGTACTGTTAAAAAGTAGTTAGCAAATCATATATGAATGGAAATTACATATATTGTTATTTCTCAAGGGACATAACCACTGAAAATTTCATTTGGACTCGTCTGAACTCTGTTCAACGAGTCCTTTTTAATCAAGTTACTGTTTTTCATCTATCACTTACTATGTGCCTTGTGGCCATCATCTATGCTGCTAAATATGCACTGACGCGATACCTGAAATTGTGTAtgcaatcatatttttataacgTTTCATACCTGTTTTCTTTATGGTGTGTTTTCCTGAATGCAGTAATATTTTCAACTGTACTGATTTTGATGGATTATAAAGGGAACCAATCACCgtacagacatttaaaatgcagtaactaacatttaatgcaaataaaacattgtataGATGTTGTGTGGCGCTGTTTCATTTCAACCATTGCAGAATATGCATAGAAGGAACGGAGTCGAATATATACGAatgtagttttttattattagtgcagTACATGAAACAGGGTTTTAGTCTCAGGTTTATTTCTAGGCATTCAAAACATGAGGCACAGCAAGCGCTAATGCGACTATAAAATGTTAACAGTGCTTTCCAACAGTTACTCAAAAACCCGAACACATTTCTTCTCCATCTGAAGCCCCAGCTTAAACTTTGAGGTAGAATTAAACACCCCCTTTTCTGAAAGTAAGTAAATATTTGCAGAGTATATCTCCCTTTCAATAAATGCAAAGCAGCCTCCAAAGCGTCTCTAAGATTCAGGACCACTCCTGATTAAATCCCACAACCCTTCCTGCTTATAGACCCGATTCAACGAAGCTAAAATCATCTTTAAGGTTTATACAAGAGCCCGTACGTGGTTTCAACAGAAGGTTCGTCGGTCTATTGGACATAAAAACGTTTAGGGAGATGCTAGAAAGCCACAAATCTTTTGCATACCAGTTAAATTACAATTTGGGGAAAGCTGCATCTAACAAATGCAACGCAATGGAGCTAAATAAAGGTGAAAAAAGCATTCGTTTCCAatacaaacttttaaatgaacgGCAGGGTCTGTTATCCTGTAAAAACGCAACATTCACTAAGGAAGAAGTGTTTGTCAGCTGCCATTAGGTCAATGTGTGAAGTTTTAGTGTGCCGAACTCCTCCGTTAAAGCGCAGTAGAGGCTGGCGAGGGATGTAGAGGATTGACCTCTATAGTTGGAGGAAGTCTAATCTGAGCCTCTGAAGAATGCTGTGGCGCGAGGAACAACAGACCCCAAAAACAAGGCcgaaaagcaaacattttcaaCAATACTTCACGTTCGATCTAACAGTGACGCAACATGTTCCCTGCAGGACTTTTGGACATACTTATCACAGCGTGCACCTACTTTCAGGAGCTATTTATgctttcgattttttttttttaaatgacgcAAATTAAGGTTGAAGTGTAAAATGTTAACTTTAAGATTTTTCACGTGGCTTTGATGCTTAACGGCACATTTTAAACACTGCCTGTGGTAACCGCTTCGTGGATCGCATTGGCTTcgttaaacttttaaaaaaaaaaaaaaaaactatggctAAAACCAATGTGGTTTACAGAGTTGAACAAGAATCAGCTGAGTGTTACAAATATACaccaactgaaataaaacttcTCGGGGAAGACGGGaataagaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49044 lncRNA downstream 11576 4913881 ~ 4915751 (-) True G33310
TU49028 lncRNA downstream 24925 4859999 ~ 4902402 (-) True G33300
TU48755 lncRNA downstream 828954 3607467 ~ 4098373 (-) True G33109
XR_006250997.1 lncRNA downstream 875855 4050782 ~ 4051472 (-) False LOC122345411
TU48810 lncRNA downstream 875858 4050915 ~ 4051469 (-) True LOC122345411
TU49071 lncRNA upstream 76992 5024945 ~ 5027815 (-) True G33330
TU49073 lncRNA upstream 84610 5032563 ~ 5033954 (-) True G33332
TU49075 lncRNA upstream 86158 5034111 ~ 5053903 (-) True G33333
TU49076 lncRNA upstream 127808 5075761 ~ 5076034 (-) True G33334
XR_006251035.1 lncRNA upstream 194625 5142578 ~ 5169249 (-) False LOC122345808
XM_043238166.1 mRNA downstream 369483 4487841 ~ 4557844 (-) False galnt9
XM_043238165.1 mRNA downstream 369484 4487841 ~ 4557843 (-) True galnt9
XM_043238167.1 mRNA downstream 404493 4487841 ~ 4522834 (-) False galnt9
XM_043238426.1 mRNA downstream 464910 4456819 ~ 4462417 (-) False atad1a
XM_043238425.1 mRNA downstream 464910 4456819 ~ 4462417 (-) True atad1a
XM_043240688.1 mRNA upstream 1131 4949084 ~ 5001056 (-) True zdhhc8b
XM_043240689.1 mRNA upstream 60133 5008086 ~ 5013941 (-) True rnf215
XM_043240589.1 mRNA upstream 221759 5169712 ~ 5333504 (-) True si:dkey-215k6.1
XM_043240048.1 mRNA upstream 403493 5351446 ~ 5380269 (-) True aacs
XM_043240187.1 mRNA upstream 435602 5383555 ~ 5388325 (-) True LOC122345752
TU48850 other downstream 304269 4622490 ~ 4623058 (-) True G33175
TU48820 other downstream 734246 4144927 ~ 4193081 (-) True LOC122346168
TU48822 other downstream 734246 4144927 ~ 4193081 (-) False LOC122346168
TU48823 other downstream 734246 4144927 ~ 4193081 (-) False LOC122346168
TU48805 other downstream 1032852 3885425 ~ 3894475 (-) False piwil2
XR_006251120.1 other upstream 483311 5431264 ~ 5431394 (-) True LOC122346225
unassigned_transcript_954 other upstream 1008346 5956299 ~ 5956371 (-) True trnak-uuu_104
TU49743 other upstream 1876218 6824171 ~ 6826182 (-) True G33758
XR_006251011.1 other upstream 1975477 6923430 ~ 6943192 (-) True usp20
XR_006251012.1 other upstream 1982919 6930872 ~ 6943203 (-) False usp20

Expression Profile