RNA id: XM_043239117.1


Basic Information

Item Value
RNA id XM_043239117.1
length 6198
RNA type mRNA
GC content 0.41
exon number 5
gene id pho
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 21686200 ~ 21695167 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGATGGAACATTCTGGAAATAGTgtagaattttttaaaactttacaggatttttttcttgaaaatttCTGCCCTTTTGCAAACCTGTttgcatgttatattatattatattaccgtgtattttttcagttttctataCATAGTGTCAACGCAGTTTGAAAGAAAGAATGTGGAATATCACGATTCACAAACATAATCTGATTGCCGAACCTAACTGAATGCTATTCAGCCTATTAACCCATTCTGCGCTGCGTCCTAAAGTGCACACTATCTAACCACATCTGCTCTAAATAGTAAAAATTAGCGTCACACAGAATTTACGAGCAAAGCACACAGAGACGCGAGCTCGCTTTCAGATGGACGATGTGCGCATGCGCGCTACCAAACACTGACGTACTTCCTGGGCGGAACACGATGGCTCCCGCTAAACGAAAACAGAGCTGTGCAACACGTGGATATGTTTGAAGCGGAGCCAGCATCTCTCGACATGCTCTTTACTTAATCTTTTTGAGGTAATTTTGTGTTCTCTTGCAGACACCGCGGGTGTTTTACCCGTCGACAACGCGCTAACCGGCGGCATTAGACAACACGGAAGTGTCGCGTGATAGAAATACACTTTGGTGGATTAAATAAGTATGGCTCTCGGTAACGAAGACTACTCGAGCCGGCGGAACAACGCCCCGGTTGAAGATGTGATGGACATCGAGAGTCACTCGCAGCTCATCTTCGAAACCCCTCCGCCTGAGGTTGTCGACTCCATCAATGAGTGTTTCGAGCAGTTCACACGAACCCTGGAGCAAAGTGATGCTGCTGCAGGCCACCGGTCTCCTTCGGACAGTTTCTCTGGTGAAAGCCTGTTTATAACGCAGTCTAGAGCTAAAGCAGCCCGAATTAAAAGACAGCTCGGATCTTCTGAGACGCCGGACTCCATCGGTGATTCTGGAAGTGGGAGAGAGAATGAAGAGCAAGCCAAGGgcaaaatgagaagaaaatatataaaaagtcttCCTCAAAGACTTAGCTTTCCATTTCTGTTGAAATCAAGCAATAAACATTGCATATCCTTAAAGAAGCACCGGGTTCTAGAGAACTCAGAAATAGGAGGGTTCTTAAAATGCATATGGAAAATCAAGGATTGCTGTGTGAACACGGGGAAAACAATCAGTGAATCTCTGCTGGAGTCAGACCTAAGTGATGACTCTGAGGGGGACGAGCACAACAGTGATCATGAAGTCACAAAAGTGgaTAGAACCATTTTTGTTCCAAGTTACTTTAAAGGAAACCAACATAAATGGCTTCCACAATCCTTCCTGGAGATGAGAGCCCAGTGTTCACTTTCAGACGACGAAGAAGAACGGCTATTCAGCACCAAagtgaaagagaagaaaagaaaaaataaatctgccaTGAAAAAGAAGGCAAGTGCTTCAAAAAACAAACCCGCTCGCAAAAGCAGAGCTGCAGCCAGGACATTATCAGAATCGTCTGTTGACTCTCTCTTCATGGAgcaggaaaaacaaaataagactCATGAGGTTTTAGCTGCATGTTCAGATGCTGAACACTCAGATTCAGCTCATCACAGACGTCGACTTACTGAGCAGACTGTCCAGTGTCTTGAGAACTTAGATGGAGATCATTTAGTGGTAATTGAAGAGACACAGAGAAACTCTATTGAGGCACTTACAGAAGCAGCTGTTCATATGGAGCATGATGGTAATGCAAGTCTTTCATCTCAAGCTGATGACTTTGCTGAATCGGAAAAAACTGTGTCAGACCTGCAGTCAGAAAACACAGCCGAACGTGTGGAAGAAATTAATTCACCTGTCCTTTCAGACAGCTTGTTTACCAGTAAacagaaaaatgagaaaaggcATGAGTTAAATACACAAGAAGTAGAGTCTGGTGCAGATTCTCGTGGAGCAGACAGTGCTCATTCAGTTGAGATGGATCGGTTCAGTGAGTCACAAACTACAGAGATGACactcaaaagaacaaaaaagaagaggaaagacAAAGAGAGGACAAAGACAGAAGATAACAGTCGTACAGAAATCTTGTCAAATGAAACTTGTGAAGCTCCTGAGACCGAACAACCTGAGCACAGAGGAACGTCAGAGGAAATCTCAGGATTAAAATCAGTGAAGAAAAAGAATGTAATTGAAGAATCTCCGTATGACTCTGATTTTGCTCTGGATgtaaattcagtatctcagttTGATAATGTCACTGATAGATCAACTACTCATGAGACGGCAGAAGAAAGACCAAGTGATGTTCTTGAACATACGCAAGCTGAAATAAATGATGCTGCACACTCAGATTCTGTCCAGTGTGCTGGGAACTTGCATGGAGATCACTTATCTGTAAttgaagacagacagacaaactcTGTAGAGGCAGTTACAGAACAAGCCATGCAGCATGAGGATGATCTGACGCCTGGAAATAACCTGCTCAACAAAAGCAGTTCTTTGTTGCTACCACAAGAGGGAGACATTTCTATACAGAATGACATTCAACAGACTGACAGTGACTTTGGTTCACAGGATTTATTCATATCATTGAACAGTCCTAAAGCGGCACCTACTACAGTGAATATGGAGGAGAGCGATCAAGACAGTGATGTGACTCAAATAGAGACAGAAGTAGAGTTTGAGTCCATTTTTGGCCCAGGAACACCGAGATGGTGTGATGGTGGCTGCCGTGCCTATGAGGACAATTACAGCGATGGAaaatctgtgtctgtgtttgggTCAGGAACACCAAACAAGCAGTTAACAAGTCAAGACATGAACAGTACCCAACACCCAGAATCCCAAAAGAAAGCCCAGACTCCCGTTGGcctaaataaaaagagaaaaaacggGTCAAGATCTCATAAGGATTCTGATGTTACAGATGTAGAGGAGACCGTGAATGTGCAACCGTCATCCGGACATTTACCACTAGCTGGTCAACCATTAAAAGAAGTTTGCTCAATTTTATCCGAGCGCCTCAACATGAGGAAACGAAGGGAGATGGAAACGGATCCTCAGGAAATtcctttgtttaaaaatgatggaCTGagctttattaaaagaaaaagaaagctgaAGGAGAAATTGGGTGCAACTAATTTTATACAGTGTGATTTAAATGTAGATGTCGGCTCTGAATCACCAGCTGATGACATTACTGGAGTTAAAACAACACCCAGAGAGAACAAGAAATCAAATGAAGTGGAAAACAGAGTAACGAATAAAGAGCAAAGggaagaaacatttttacatattgtgGAGACATCACTGAACCTGGAGGAAAGTGTGGCAGATGACAGTGCCATCCCAAGGGTtaagaggaaaaagaagaaaaagtacaaattaaaagaaCATGACGTAGAGCCAAGTGTAGAAATTCAGTCTGTTGAGACGGTTCAGTTCAGTGGGTCACAAACAGCTGAACTGACatccaaaataactaaaaagaagagaaaggtCAAAGACAGGACTAAGATTGTATACGTAGGGGACTCTGATAGACCAGCAGAGTTGAGAGTAAATGATCAACACAGTGAAGTTCCAGAGACGAACGAACCTGAGTTTATACAGACATCAGAGGAAATCACAGGATGCCCAGTGACTAATGTAACTACATTGAAACCtgtaaagaagaagaagaagaagaagaaaagagacgAGACTGAAGAGCATGAATATGAACCTGTCGATCTGGATGTAAGCTCTAGGTCTCGGTTTGATCATGCCATTGAAGAACGGCCAATTGATTGCAACACAGCTGAACATTTAGAAGGTATCGCACCACTTATTTTAAAGGCTGCCAGAATCAAAAAGAAAGGCCGAAATGCAAGTTCTTTAAGTGACATTATTGGACTGGAAAATCAAGCATCGGGCTCGCAGTCAGAAAGCGCAGAAGTAgtcttgaaaaagaaaacaaagaaaaaacaggaATTACAAGAGCAAAAGAATGCAGAACTTGCTTCAGATATTGGGGAAGATGTGCGTTTGTTTCAACAAAGTGAGTCATCAATTACAGATTCGCtaaccagaaaaacaaaaaagaagagagcAAACAAAGACAGGGAAAGGACAACAGATAGCTCGTCGAATGGCACTTTTGACCAGATGTATGAAAGACTTTCAGAAGTGAGAGAAAATAATGTGATTCAGTCCATTGAGGCCAACAAGACCAATCTGTTTGAACATTTACAGATGACGGAGGACATAAGTTGTTCTTCACCCAGTGTAAAtaaatggaagaaaaagaaaaaaaaggatagAAGTGAGAAACCTCAGTATGATTCTGCATCTCAGCTTGATGTTGTCTCTGGGCTGATGGGACAAAAGATGATTGAAAGGCCAAGCACTGACAGTGCAGTGGAACATTTGGAAGGTAATTCAGTAGATACGTTAAAGGTGGCCAAACGCAAAAAGAAAAGTCAGATTTCAAGTTCTTCAGCTCAAGCTGATGGCATCGTTGGACTGGAAAACGCTGTGTCAGACCTGCAGTCAGAAAACACAGCCGAACGTGTGGAAGAAATGAACTCACCTGTCCTTTCAGACAGCTTGTTTACCagtaaacagaaaaagaagaaaaggcaCAAGTTAAAAGTGCAGGAGGAAGTAGAGTCTGGTGCAGATTCTCATAGAGCGGACAGTGCTCATTCAGTTGAGATGGATCGGTTCAGTGAGTCACAAACTACAGAGATGACactcaaaagaacaaaaaagaagaggaaagacAAAGAGAGGACAAAGACAGAAGATAACAGTCGTACAGAAATCTTGTCAAATGAAACTTGTGAAGCTCTTGAGACCGAACAACCTGAGCACATACAGACGTCAGAGGAAATCTCAGGATTAAAAtcagtgaagaagaaaaagaagaagaagaagaagaagaatgccAGTGAGGAATCTCAGTATGACTTTGCTCTGGATgtaaattcagtatctcaggtTCATAATGTCACTGATAGATCAACCACTCAAGAGACGGCAGAAGAAAGACTAAGTGATGTTCTTGAACATACGCAAGCTGAAATAAATGACCCTAAACACAAGAAGAAGAGGAAACGCTCGAGTTTGTCTGTTAATAACGGTTCTGAGTTCAGCTCTTCTGATGCACAAATGCAGGAAAGTGTTGTAcctgagaggaagaggaagaagaaaagaaactcTGATCACGTGACAAATGCAGGTGAATTGATTTTGGAAAGTTCTGATCACACAGCGCTGTTTGAAAAGTCTCAGAGCCCGGTGTTGAAATCACTCGAGTCGATTACGAAGAAgtccaaaaaaaggaaaaacaaggaAATTATTGAAAGCATAAATCACGTACCGGAGAATAGTGCTCAAGCAGAAACCATACAGACAACCAGGACTGACTCAATCATACAGCACAATGCAGACAGACAGGCCCACGTTATTATCTCACTGGGGGATTCTGAAGatattagaaagaaaaaaaagaagaggaagaagaaaactgaaaatatcacGGTCTTATAACAATGACTCAGCTGCAGCAGTACATGAAGAAGACCCACCCAAAAGATTCtgttcattcacacacaaaacacgTGAAAAGATTAACCTAAAGATAATCATCTGATGAAGAGAGGAAAGTTCATGTGtacttaaaggagtagttcacccatcAATGAgaattctttcatcatttcctCGAGTAGTTCCGAACCCCTTAGCATTTACTCGGTTTGGAACTGctcgagtaaatgatgaaagagtttttgggtgaactatttcgtTAATAGTTAAAACTCTTCGGTCCACAATAGAAAAGCGTGGGCAGGAGGTGATAATAAGGCGAGGAAGAAACCGGTTCAAAAGATAAAGCTTGTTTCTAAAAGCTGTGACTAAACGTATTTTTAACGAAGCGTTTTGTGAAATGCTACACCTGTACATATTTATAGTTACTTGTTTTGTTGACGTGCAGATGATCAACATTCTTGTGACagtggctttatttttttaataaaacatgtacattttatttcaatcattGTACAGCCAAATTAAACGGTCTCTCCTAGAGCACTGTaacattattactgtcagaAGAGTTTATTTATACAGAGGCAATATAATTCTGACGTACTTTATACATCTGCATTGTGAACACTTAGTCTGCTTCAGCCAAATAAAACATACCAGGCATTCTCTGTGTGATAAATACA

Function

GO: NA

KEGG:

id description
ko03040 Spliceosome
ko03013 Nucleocytoplasmic transport

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU56726 lncRNA downstream 271931 21410985 ~ 21414269 (-) True G38347
TU56717 lncRNA downstream 307018 21172678 ~ 21379182 (-) True G38342
TU56718 lncRNA downstream 307018 21172678 ~ 21379182 (-) False G38342
XR_006251054.1 lncRNA downstream 324077 21361011 ~ 21362123 (-) True LOC122345899
TU56699 lncRNA downstream 534357 21150208 ~ 21151843 (-) False G38334
TU56961 lncRNA upstream 1161 21696328 ~ 21697193 (-) True G38507
TU56970 lncRNA upstream 126309 21821476 ~ 21829707 (-) False G38510
TU56971 lncRNA upstream 126309 21821476 ~ 21829707 (-) False G38510
TU56968 lncRNA upstream 132156 21827323 ~ 21829707 (-) True G38510
TU56967 lncRNA upstream 132448 21827615 ~ 21829707 (-) False G38510
XM_043239118.1 mRNA downstream 533 21678239 ~ 21685667 (-) True aspa
XM_043240482.1 mRNA downstream 13304 21424370 ~ 21672896 (-) True LOC122345940
XM_043240487.1 mRNA downstream 196010 21424370 ~ 21490190 (-) False LOC122345940
XM_043240483.1 mRNA downstream 208243 21424370 ~ 21477957 (-) False LOC122345940
XM_043240484.1 mRNA downstream 212121 21424370 ~ 21474079 (-) False LOC122345940
XM_043238169.1 mRNA upstream 9034 21704201 ~ 21808104 (-) True LOC122344645
XM_043240340.1 mRNA upstream 113846 21809013 ~ 21826105 (-) False akap10
XM_043240339.1 mRNA upstream 113846 21809013 ~ 21826105 (-) True akap10
XM_043238742.1 mRNA upstream 132439 21827606 ~ 21829682 (-) False selenow1
XM_043238741.1 mRNA upstream 132439 21827606 ~ 21829682 (-) True selenow1
TU56743 other downstream 66617 21612688 ~ 21619583 (-) True G38355
TU56747 other downstream 317152 21364238 ~ 21369048 (-) True G38359
TU56460 other downstream 750107 20929150 ~ 20936093 (-) False LOC122345723
TU56325 other downstream 1558810 20125589 ~ 20127390 (-) True G38140
TU56161 other downstream 1630402 20051659 ~ 20055798 (-) True G38058
XR_006251046.1 other upstream 113846 21809013 ~ 21826105 (-) False akap10
XR_006250934.1 other upstream 182989 21878156 ~ 21884022 (-) False LOC122344823
XR_006250933.1 other upstream 182989 21878156 ~ 21884022 (-) False LOC122344823
XR_006251116.1 other upstream 264618 21959785 ~ 21959884 (-) True LOC122346220
XR_006251119.1 other upstream 344734 22039901 ~ 22040034 (-) True LOC122346224

Expression Profile