RNA id: XM_043239119.1


Basic Information

Item Value
RNA id XM_043239119.1
length 2746
RNA type mRNA
GC content 0.47
exon number 11
gene id bckdk
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 21967987 ~ 21984219 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAAACACCAGAAGAGACGGCTAATTTCACATCTAGAGACGTGATGGTGCCAGAGACGTGCCTTTGTGCACGAAAGAGCTCGCTGTGTCGGATGGCGAGGTAGACGGATTCTGAAACCAAGGGCAGGGGATTGAGTTTTCTTATTTCTGTTATCCAAGTGTAGAAATGCACGGTCGCGTGACAGGCCAGGCCATGGAGCTGCTGAGCAGCGGCGCGTCCAGGATCAGCGTGACCAGGCTCTTTCTGTCCACGCCAGCGAAAGCGGCCGATCCGAAAAGGTTTCGGTCTACATCGTCCATGTCCAGTTACACTGAGCTGGCTCGGGAGCGGTCCAAAACTGTTACTTCTTTCTACAATCAGTCTGCCATTGACGCGTCTGCCGAGAAGCCTTCTGTTAGACTGACCCCAGCCACTATGCTGTATGCAGGGAAGTCTCCTGATGGACAACATATCCTGAGCAGTGCCAAGTATCTACACAAAGAGCTACCTGTTCGTATCGCCCACCGTATCAAGGGCTTCCGCAGCCTGCCCTTCATTATCGGCTGCAACCCAACCATTCTCCAAGTGCACGAGCTTTACATCAGGGCCTACCACATGCTGAGCGACTTCCCAGCTATAAAAGACCAGGAGACTGAGGCTCGGTACAGCAAACTTGTAAAACAGCTTCTTGATGATCACAAAGATGTTGTCACCATGTTGGCCGAAGGATTCAGGGAATGCCGTAAACACATAACGGACGAGACTTTGGTTCGTAATTTCTTGGACACCACGCTGACGTCTCGTCTGGGCATCCGCATGCTGGCCACACACCACATTGCCCTTCATGAGGATAACCCTGATTTTGTAGGCATTATATGCCGTCGCCTGTCCCCTAAAAAGATCATCGAGAAGTGGGTTGATTTTGCTCGGCGTCTCTGTGAGCATCAGTACGGGAACTCTCCACGGGTTCGCGTTAATGGCCATGTGGCGGCCCGCTTTCCCTTCATTCCACTGCCACTGGACTACATCCTGCCTGAGCTGCTGAAGAACGCCATGAGGGCCACAATGGAGAGTCACTTGGACACCCCTTACAATGTGCCTGATGTTTTGGTCACAATCGCCAACAATGACACAGACTTTGTCATAAGGATCTCAGACCGCGGCGGTGGCATTCCTCATACCATTTTGGATCAGGTGATGGATTACCACTTCAGCACGGCTGAACAGAGCACACAGGACCCCCGCATGAGCAACCTTTTCAACAGCATTACCAACAGCGGCCCCCAGTCCGGACCCATGCACGGGTTTGGCTTTGGTCTGCCTACGTCTCGGGCGTACGCCGAATACTTGGGGGGCTCCCTGGCCATCCAGTCGATGCAGGGCATCGGCACAGACGTCTACCTGCGTCTCCGACACATTGACGGCAAAGGAGAGAGCTTCAGAGTTTGATACCGTGGTCCGTTCATAGAGTTTTTGGTCCTTTTCTATACAGAAGATTTTAAGGCTCGAAGTCGAACCAAAAGCGGGATGTTCAGCAGTTGTCCTTTCACTCATATTACCCGTCACGGCATCAGTATCACATTTCGGATCACGTTTTCTGCAGATTATGGGTGTAATGCGTGCGAGTCGCACTGCGTTGTGTTTGTGTAGTGCACTGTGATTTCTGTAAAACTTTCAGCCTTAAGATTACAAAGTGATTTGATGATTAAAACCCATTGTGTTGCTGTCCACCGTCGGCAGTGGGACGAGTCCTTACACTCCAGACGCCTGCAGGAGACGCTCTTCAGTCAGCCATATTCTGCTTTTCTTCTGAAATAGGAGTGAATTGTTTGAACTTTTTGGAGATGCATGTTCGCTCCAGTGGCGAACGCAGAAAACTGCTAGTGAACACTGCATAGAGATCGACTGCCTTACGAAAAAGACTTGGTCAAAATATACCGTCTGTCTTGCTTTTGACATTTCACATTAACCGTATGAGCTTAAGAGTTTCTTGTAGATTTCATGCCTGAAGTTGTTTGCTAAAAAGGCCCCTGAGGTTATAGCACAGCGTAAAATAAACAtagctggggtttttttctttctctctccagcaAACGGTGGTTATAGAGATGTTCATGTTTgaatgggtgttttttttttaacgaccCACCTGCACATGTGGtcttttcatcattttgtttaGTTCATTTTCTAAAAGAATGCCAACTTGTTTGAGACTCTGCGAGACCATGAGATATATTTACCtgaattcatttgaaattgACCCCAGATGACAAAAGTTCAACTGAAATACCAATTGAACTGCTGGAGGAGTTCACAATACATGTAGTACAAGTAATCCATAACGTTTTGTCTTGTAATGTTGTGCCTGtggtttcttttctctctttttttgaatCGATTTTCAGGAGAAGGAGCCTTGGTGTGTTTCCTGCTCATCTGTTCTGGATTTGTTGCCCCAGTTTGCCCTCTACTGGTGCAATCTGAGTATTGACTTTTGACTTTTAAACCAATACAGACGTAATGATGAAGATTTAGTGTAATGAGTGATGTACAGTAGGTTCTGGATGATTCAGGAGAACTAACATGCACATATTAAGATATtcctttgtttatataaaaggcCAAATTGTGGCATGACGCACCCAGATTGATATCAAAGATGggatcattttattgtattttgttttcttttgatgttGAGTTTGCATTACATAGATGCCAAATACGCATAGCTTTTTTGGGCATTATAAAATTCTGGATGAGAa

Function

GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0016301 kinase activity molecular_function

KEGG:

id description
K00905 BCKDK; [3-methyl-2-oxobutanoate dehydrogenase (acetyl-transferring)] kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU56992 lncRNA downstream 91402 21867615 ~ 21876585 (-) True G38523
TU56990 lncRNA downstream 100526 21867128 ~ 21867461 (-) True G38521
XR_006250963.1 lncRNA downstream 127887 21836313 ~ 21840100 (-) True LOC122345027
TU57036 lncRNA upstream 24669 22008886 ~ 22010107 (-) True G38543
XR_006250931.1 lncRNA upstream 54143 22038360 ~ 22041267 (-) False LOC122344815
XR_006250930.1 lncRNA upstream 54143 22038360 ~ 22041263 (-) True LOC122344815
TU57040 lncRNA upstream 54163 22038380 ~ 22041219 (-) False LOC122344815
TU57041 lncRNA upstream 54163 22038380 ~ 22041219 (-) False LOC122344815
XM_043240128.1 mRNA downstream 851 21961430 ~ 21967136 (-) False orai2
XM_043240127.1 mRNA downstream 861 21961430 ~ 21967126 (-) True orai2
XM_043239243.1 mRNA downstream 14961 21925498 ~ 21953026 (-) False ap2b1
XM_043239242.1 mRNA downstream 14961 21925498 ~ 21953026 (-) True ap2b1
XM_043238440.1 mRNA downstream 45914 21909774 ~ 21922073 (-) True LOC122344852
XM_043240539.1 mRNA upstream 5728 21989945 ~ 21997417 (-) False lrwd1
XM_043240540.1 mRNA upstream 5728 21989945 ~ 21997417 (-) True lrwd1
XM_043240541.1 mRNA upstream 13419 21997636 ~ 21999412 (-) True alkbh4
XM_043240542.1 mRNA upstream 13419 21997636 ~ 21999384 (-) False alkbh4
XM_043240544.1 mRNA upstream 15277 21999494 ~ 22001615 (-) True polr2j
XR_006251116.1 other downstream 8103 21959785 ~ 21959884 (-) True LOC122346220
XR_006250934.1 other downstream 83965 21878156 ~ 21884022 (-) False LOC122344823
XR_006250933.1 other downstream 83965 21878156 ~ 21884022 (-) False LOC122344823
XR_006251046.1 other downstream 141882 21809013 ~ 21826105 (-) False akap10
TU56743 other downstream 348404 21612688 ~ 21619583 (-) True G38355
XR_006251119.1 other upstream 55684 22039901 ~ 22040034 (-) True LOC122346224
TU57575 other upstream 1618027 23602244 ~ 23604733 (-) False LOC122345364
TU57636 other upstream 1767663 23751880 ~ 23756588 (-) True G38917
TU57720 other upstream 1903086 23887303 ~ 23887680 (-) True G38973
TU57904 other upstream 2213488 24197705 ~ 24200496 (-) True G39113

Expression Profile