RNA id: XM_043239136.1


Basic Information

Item Value
RNA id XM_043239136.1
length 2578
RNA type mRNA
GC content 0.49
exon number 15
gene id atp6v1aa
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 10908898 ~ 10918493 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTCCTCGCTTCACTGCTTGGATTGCTAACACAGAGAATGGATTTTTCCAAGCTGCCTAAGATCCGAGATGAGGAACGTGAGAGCCAATTCGGATATGTGCATGGAGTTTCGGGCccagTGGTGACGGCCTCTAGCATGGCAGGTGCGGCCATGTATGAACTGGTGCGTGTGGGCCACAGTGAGCTGGTGGGAGAAATAATCCGATTGGAGGGAGATATGGCAACCATCCAGGTGTACGAAGAGACCTCTGGAGTTTCTGTTGGAGACCCCGTGCTTCGCACTGGAAAGCCACTCTCTGTGGAGCTGGGGCCCGGAATCATGGGCTCCATATTTGACGGTATTCAGCGTCCCCTCAAAGACATCAATGACCTCACGAAGAGCATCTACATCCCCAGAGGGGTTAACATAGGTGCTCTTAACAGGGACCTCAAGTGGGATTTCTCTCCTTTTCAGAACCTGAGGGTTGGAAGTCACATTACAGGAGGTGATATCTATGGATTGGTGTATGAGAACTCTCTCATCAAACACAAGATCATGCTGCCCCCCCGTAGCAGGGGAACAGTCACCTACCTCGCTCCGCCGGGAAATTATGACGTCTCTgatgtGGTGCTGGAACTGGAGTTTGAAGGAGTGAAGGAGAAGTTCACCATGGTGCAGGTGTGGCCTGTGAGACAGGTGAGGCCTGTTACTGAGAAGCTACCTGCCAATCACCCCCTGCTGACTGGACAACGAGTGTTGGACGCCCTCTTTCCTTGTGTCCAAGGAGGGACCACAGCCATTCCCGGAGCCTTCGGCTGTGGAAAGACGGTgatctctcagtctctctccaAGTACTCCAACAGTGATGTCATCATTTACGTGGGTTGTGGAGAGCGTGGAAATGAGATGTCTGAAGTATTAAGAGACTTTCCGGAGCTAACTATGGAGGTGGACGGCAAGGTGGAGAGCATAATGAAGAGAACAGCACTGGTGGCCAATACCTCAAACATGCCTGTGGCTGCCAGAGAAGCCTCCATCTACACCGGTATCACATTGTCTGAGTACTTCAGAGACATGGGCTATAACGTCAGCATGATGGCTGACTCCACCTCTCGTTGGGCTGAGGCTCTTAGGGAGATTTCTGGACGATTGGCTGAGATGCCTGCTGACAGTGGGTATCCTGCATACCTTGGAGCCCGCCTGGCATCGTTTTATGAGAGAGCAGGTCGAGTGAAGTGCCTGGGTAAcccagagagagagggcagTGTTAGCATTGTGGGAGCTGTGTCTCCCCCTGGTGGTGACTTCTCAGATCCCGTGACTTCTGCCACTCTTGGTATCGTGCAGGTGTTCTGGGGTCTAGATAAGAAGCTTGCCCAGAGGAAACACTTCCCTTCTGTTAATTGGCTGATCagttacagtaaatatacaCGAGCGCTGGATGAGTACTATGACAAACACTTCCCAGAGTTTGTGCCGCTGCGTACCAAAGCCAAAGAGATtctgcaggaggaggaggacctGGCTGAGATTGTGCAACTTGTTGGaaagGCCTCTCTGGCTGAGACGGATAAAATCACTCTGGAGGTGGCCAAACTCATTAAAGATGACTTCCTGCAGCAGAACGGTTACACTCCCTATGACAGGTTCTGTCCCTTCTATAAGACAGTGGGGATCCTGTCCAATACGATAGCTTTTTATGACCTGGCCCGACATGCTGTCGAGACCACAGCGCAGAGCGATAACAAGATCACCTGGGCCCAGATCCGTGAACACATGGGAGAAATTCTTTATCGCATCAGTTCCATGAAGTTTAAGGATCCAGTCAAAGAGGGTGAAGCCAAGATCAAAGCTGACTACGCTCAACTGCTGGAAGACATGCAGAATTCTTTCCGCACTCTCGAGGACTAAAAGCAACCTTTGACCTCACACGTGTCCCAGCTCTCTCCTCCCCTGTGCTGTGCAGTGCATTTCCCAGTGCTCCCTTGTGCATGTATACCTCTCGTCTGAATATACACTGAAACCGAACGAGACGAACGAAAGCCCGAGCTCGTAGCCATCGTTAATCTGAACACGGTCTTTAGAAACGTAAAGAGAGTGTGTTCTCACTCAACTGTTACTTGGTGTTTGAACTATGAGATTGTATTTTAGCAAATGCCTCTGTGATCACTCTGTGCTGAGACTCAACACTTGaagcacaaaaacagcaaacattCATCTTTTTCTCACCACCTGCTTTCCCATGAGTCCTCGCTGCATGTGTTTGGAGCGCAGGGGAGCACAGTGTTTATTCCCatctcagttttgtttttctctgtgaccaatagaaatgtgtttatataataatggGAACAATAGAAAGGGATCACTGAGGCTTTCCcttatttatttgaatcttGTTTTGTCTCATTAATGTGAtttctgctctgtgtgtgtgttcctttCATCGTTTCTCAAatttctgtgtgtgagtgtgagagtgtgtgtgtgtgtgtgtgagagagcagaGTATTGTGGCTTCTGTAGTGGTACATTACTACATTTACTGTGTGTGGTGTTGTGTGTTCAGTTCCAAAGAATTAAACTATTGGAAACTGTG

Function

GO:

id name namespace
GO:0006883 cellular sodium ion homeostasis biological_process
GO:0046034 ATP metabolic process biological_process
GO:0010447 response to acidic pH biological_process
GO:0009651 response to salt stress biological_process
GO:0006874 cellular calcium ion homeostasis biological_process
GO:0033180 proton-transporting V-type ATPase, V1 domain cellular_component
GO:0005524 ATP binding molecular_function
GO:0046961 proton-transporting ATPase activity, rotational mechanism molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251094.1 lncRNA downstream 22160 10875648 ~ 10886738 (-) True LOC122346117
TU51839 lncRNA downstream 70601 10838005 ~ 10838297 (-) True G35203
TU51837 lncRNA downstream 75303 10832858 ~ 10833595 (-) True G35201
TU51829 lncRNA downstream 118526 10766861 ~ 10790372 (-) True G35194
TU51823 lncRNA downstream 156994 10751335 ~ 10751904 (-) True G35189
TU52118 lncRNA upstream 13949 10932350 ~ 10933745 (-) True G35385
TU52130 lncRNA upstream 20294 10938695 ~ 10939486 (-) True G35388
TU52135 lncRNA upstream 41910 10960311 ~ 10963602 (-) True slc25a15b
TU52137 lncRNA upstream 41910 10960311 ~ 10963602 (-) False slc25a15b
TU52162 lncRNA upstream 120289 11038690 ~ 11039232 (-) True G35410
XM_043240653.1 mRNA downstream 8624 10894152 ~ 10900274 (-) True zdhhc23a
XM_043238365.1 mRNA downstream 15304 10890842 ~ 10893594 (-) False LOC122344793
XM_043238364.1 mRNA downstream 15304 10890842 ~ 10893594 (-) True LOC122344793
XM_043238338.1 mRNA downstream 19113 10887152 ~ 10889785 (-) True ctsll
XM_043238725.1 mRNA downstream 147673 10753401 ~ 10761225 (-) True dgcr8
XM_043238337.1 mRNA upstream 35369 10953770 ~ 10957971 (-) True mpdu1a
XM_043239666.1 mRNA upstream 45200 10963601 ~ 10969118 (-) False slc25a15b
XM_043239661.1 mRNA upstream 54812 10973213 ~ 10979926 (-) False si:ch211-114c12.2
XM_043239660.1 mRNA upstream 54812 10973213 ~ 10979926 (-) True si:ch211-114c12.2
XM_043239662.1 mRNA upstream 54812 10973213 ~ 10979920 (-) False si:ch211-114c12.2
TU52098 other downstream 34834 10868364 ~ 10874064 (-) True G35371
TU51745 other downstream 447189 10461208 ~ 10461709 (-) True G35122
XR_006251099.1 other downstream 573556 10325115 ~ 10335342 (-) False si:dkey-96l17.6
TU51236 other downstream 1506275 9337828 ~ 9402623 (-) True G34789
TU51091 other downstream 1688391 9215508 ~ 9220507 (-) False vamp5
TU52116 other upstream 5526 10923927 ~ 10926163 (-) True G35384
TU52323 other upstream 501554 11419955 ~ 11467122 (-) False hmgn7
TU52322 other upstream 545430 11463831 ~ 11467122 (-) True hmgn7
TU52344 other upstream 665379 11583780 ~ 11652627 (-) True G35554
TU52507 other upstream 882913 11801314 ~ 11815810 (-) False msna

Expression Profile