RNA id: XM_043239158.1


Basic Information

Item Value
RNA id XM_043239158.1
length 6253
RNA type mRNA
GC content 0.46
exon number 27
gene id clip1a
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 26821298 ~ 26851848 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aataataagctttattttattattttatggccCCCTTAGAATTCCACCTCTAAGGGCTTCAcgtgaatgaaaataaaacacactgaaatagAGAagagtaaaatgtattataaataacatcTCTAGAAATCGGCCCTTACAATCCTCCTAACAACATTTGGATCACAAGAAGAAAAGGCCTGGTCAGAGCAGCATAGTAAAGAAAAGGAGGTTATGTTTTTAGCATAGTTTAAATTGAGGTAATAGCCAATACAAACTAAACACTAAACGTATAACTAAAAACTATggacataaatataataataataacaacaacaaaaaaatactaaaacacaGCATTACCAACACTTCAGCTAAAATGAAAGtgagaacaaacaaaaatcttaattttaaataaccattaataatactaataatacaaataatagcGTACATAAATGATACCAATGATTCTGACTTTCTCCCGTTTAATTATTTAAGTATCTTACACAAGTACTAGCGTAGTGTGTTTGGCCTAAACCAAAGCCTCTCTCTCCGTTGATGATCTATACACTGTTTTGAACACGCGTCTTCTTCTACGGTGACTCGTCTCAGTCCGCTTCGGTTACGTCCGATCCCGTTCGCTTTTTCCTCTTCGGGGTTCCCGTTGGCCTGGGCGGAGCGGAGCGAGGACACGTCATTACGCCACCCGTGTCACCAGCGAAGTGGGCGCTTGAACGCAGCAGGTTAAATCCTCAAGCAACGCGGGCGTCAAGCTAAGTAGATAGAAGAGGATCCCGGCTCGATCCGTGTTCGGTAGCGCTACGCGGCCCGAAGCCAGCAGACGCTGCTGCACTCCTTTCtccctcactttttttttttttttttttttttttttttttaatttaattttgttttgtaactttttttttttctacaccgTTGCTCCGAACTCAACAGTCAATGTTTGTTGGCGAGGAGACGTGCAAATATAGACGGGCTATTTCAGAGCAACAATGAGCACATCAAAACCCAGTGGACTCAAAGCGCCCAGCAAAATTGGCCGATCAGCCAATGCCGGGGTAACAAAGACGTCTCCTTCTGCAGGTGCTGCTAAATCTACTCAAGGTGACAAATCGTCAGCCGAAGCCCAGGATGCAGGAGAACAGTTCAAGATTGGGGATCGTGTCTGGGTTAACGGCAACAAGCCGGGCGTCATTCAGTTTTTAGGAGAGACCCAGTTTGCCCCGGGCCAGTGGGCTGGAATTGTACTTGACGAGCCGATTGGGAAAAACGACGGTTCTGTGTCAGGTGTGCGCTATTTTCAGTGCGAACCGCTGAAAGGTATTTTCACGCGGCCGTCCAAGCTTTCACGCACAGAAGGTGAGCCGGATGGAACGACGACGGCTCCCCCGTCCCGTGCTGCGTCACCCACACCCTCCACTGCATCGGTGTCCGCTTCAACCAAGAAACCAGCTTCACCCACTAAAACCTCTACGCCGGCCTCGGAGCTGGTGCGGTCGAAGAGCGAGTCGGTGTCCAATCTGTCGGAGACCGGCTCGGTCAAGAAAGGTGATCGGGAACTGAAGATCAACGACCGAGTGCTGGTTGCTGGCACAAAAGCTGGTGTAGTGCGTTTCTTAGGCGAAACCGATTTTGCCAAGGGTGAGTGGTGTGGAGTTGAGCTGGACGAGCCCTTGGGAAAGAATGATGGTGCTGTGGCTGGAACCAGGTATTTCCAGTGCCAGCCCAAGTACGGTCTGTTTGCCCCAGTGCACAAGGTGACCCGTATAGGTTTTCCCTCCACTACCCCCGCCAAGGCAAAGACCACCGTGCGGAAGACAGCGGCCACACCGTCAGGACTGAAACGCAGCCCCAGCGCCTCCTCCATCAGCTCCATGAGCTCCGTGGCTTCATCTGCGAGCTGCAAGCCAAGCCGAACAGGACTGttGACTGAGACGTCTACGAGGTATGCGAGGAAGATCTCTGGCACGACAGCACTTCAGGAAGCCCTGAAGGAGAAACAGCAACACATCGAGCAACTCCTCGCAGAACGTGACCTGGAGAGAGCCGAGGTTGCCAAGGCAACCAGCCATGTGGGCGAAGTGGAGCAGGAGCTTACGATATTGAGAGAAGGCCAGGAGCAGTATGTGTTGGAGGTTGATGCCAAAATGGACCAGCTGCGAGCGCTTGTGGAGGCTGCGGACAGAGAGAAGGTGGAACTGCTCAACcagctggaggaggagaagagGAGGGTGGAGGACCTGCAGTTTCGGGTGGAGGAAGCTTGCATTACCAAAGGGGATTTGGAGACGCAGACGCAGCTGGAGCATGCCCTTCTTAAGGAGCTTGAACAGAGTCTTCTCTTTGAAAAGACCAAAGCTGACAAACTTCAGAGGGAGTTAGAAGACTCTAGGgtgGCCACAGTCTCTGAGAAGTCCCGTATACTGGAGTTGGAGCGGGATCTTTCGTTAAGAGACAAGGAGGTAGCTTCACTTCATAAGTCACTGGAAGCTTTATCAGGTCAGGATGGGGTTACTGACTCCACCATGGCAATACTCCAGGAGGAACTCTGTTCCCTCCGTAAACAGCTGGTCGCTCAAAGTGACAGTCACCAAGCAGAGCTGTCTTCCTTGCGTCAGATTCTTGCGACTCGAGAAAAAGAACACGGTGAATCTCTGTCACAGCTCCAGTCATCCTCAGGTCGCTTATCGAAGGATAACGAGCAGCTTTTAGGTCAGTTGGCAAAATCAAAGGAGGAGAATTCAAATATCATCGAGGAGTGGTGTGCTAAACTAGCATCAGTCGAGGCCTCACACCTGCAAGCCTTGGAGGAGCTCAAAACCTCGCATGAGGCAAGCAAATCTGAGCTGCTGGATGTACACAATGCTCTGGAACAGTTGaaattgaaacaaaaactgGATCTCGAAGACCTTGCTAACAGACATGCTTCTGAAACCGTGGGGTGGACGGGTGAAGCCAAAGAGCACAAGGCACAGCTCCTGAAGGTCACCGAAGAGAAAGAACGGCTCGTAGAAACGCTACGCACCAATTTGGAGAAGGTAGAGGAGCAGCACCTGGTGGAGATGGAGGAGGTCTTGGGAAAACTTCACAGTGCTGAGCTCAGGGTAAAAGAGCTAGAGGACACAGGAGATAAGTTAGGTCAGCAGTTGCATGAAAAGTCACAAGAAGCTATGGAGCAAAAAACAGCCCTTCAGACTCTGCAGTCACAGCAAAGTCAAGGGAACCAAGAGATGCAAAGGTTATTGACCCAAATAGAGGAGGCAAAAAGCCAATCCAGATCTCAGGAAGAAAAGGCCACTGGGTTAAACTCTGTACTAGAGGCTAAACAGCAAGAGCTGAATGGCCTGTTGCAGGAAAAGATCTCTCTGGAGCAAGAAGTTAGTGAGCTGAAACAGAATCTTGAAAAAACATCTAACGATCAAGCCAAATCTGCTCAGACTAATCAAGAGTTATGTGATGAGCTCAGGAATAAAGAGGAAAAATGCACATCCCTCTCTGCTGAATTAAAGGATATGAAGAGTCAGTGTGCTGGTTTACAGAGAAATTTGAAAGCAAACGAAGAAAGGATAGTGCTGCTGACCAAAGACAAGACTAAACTTGAGAATGACATTATGGACATGACAAAGTCTTCGGGAGACAGTTCTACTCTGATAACAAAGCTGAATGAGGATATCAAGCAGAAAGAAAGGAGACTAGACGAACTTCAGAACCAGCTTGAAGAGGAGAGGGAGAAGGCAGCTCTGGCTGAGGAGAAACAGTCTCATGCGCAAGTCCAGGCTGAGAATGAGGCCCAAAGCCTTGAGAAGAGACACCAAGCAGAGCTTTCCAGCCTGCAGGAGAGGATCAAGCTTTTGGAGAAAGGTGCTGAGGACAATCAGGCTAAAGCCAAAGACTTGCTTTCTTCGGGAGAGAAAGCTCTCGCAGATGCTGCGGAAAAGCATACAAAAGAAATGCAGGAACTAAACGGCAAGTTTGAAAAAGTGCAACAGGAGCTTCAAGTGTCTCAAAATGAAAGCCTGGAGCTGAGAAAACAGATTGAGGAGTTGAAGACCTTCAAAGAAAAAGCTACAATCTCAGAGAAAGCAGAACAGACTGCACAGGCCGCAGTGCAGAGACTGACCGAGGAGAACCAACAACTTCAGAAAGACAAGTCTGAGGCTGAGGCTCTGGTGACGCAGCACAAGAACTCAATTCAAGAAATGCATAGCAAGCTGGATGCTTTGAAGCAGCAGAACTCAGAGTATCAAGAGAACCTGAATTCTGACAGTCAGAAGATCAGCAGCCTCAGTAAAGAGATTGAGGAGCTGAAACAAGCTGCTGTCGAAAAAGCCCAGGCAGTCGAGGCTCTGAAAAATGAGAAGGAGAAGCTAACCGTGGACCTTGCCAACAGCCACAAAGACAGTAACATTCTGCTAAATCTCAAAAAGGAGTGTGACAACCTTAATGATCAATTGAAGGAGATGAAAACGAGGGAAAGCACTTTAACAAGCGAATCAGAAAAGGAGAAATCAGCACTTCAGCAGTCTCTCCAAACACAGAGTGCCTTGATCTCAGAAAAGGACAAAGAATTAGACTCTCTGAGAAATGAGTTCAAAAAGGAGTGCGACAGCCTCAATAGTCAGTTAAAGAAGATAAAAATGAGTGAATGTGTTCTGCGCAGGGAAAGCACTTTAACGAAAGAAACCGAAAAAGAGAAAGCAGCACTTCAGCAGTCCCTCCAAACACAGAGTGCCTTGATCTCGGAGAAGGAAAAGGAATTAGACTCTCTGAGAAATGAGATATCAGGTCTGCGCGATTCGACGCAGGTGCTGCAGTCCAATCTGAAATCTCACAAGAGTGAGAATACTTTGTTGCAGGAGCGAGTGAAGAATCTGGAGACGAGTTTAGCTGACTCTCAGATCACCAGCAAAGGAGATGATGCCTCAGATGATTCTGCTTTACAAGTGTGGAAGGAGGCAAAGGAAAATGCTGAACGGCAGgtTGAATTCCTGAACTCGGTTATTGTGGATCTTCAGCGGAAGAACGAAGACCTAAAAGCAAAATTAGAGAAGATGGCTGAAGCAGCGATCAATGGAAACGGTGCAACGGAAATGGACAGCCAAAACAGTCACGCCGAGCCGACGATTAAAAAGAAACCCCCTCCACGTCTCTTCTGTGACATATGTGACTGCTTCGACCTACACGACACGGAGGACTGTCCCACCCAGGACCAGATGCTAGATTCCCCGCCGCACACCGCCTATCACGGCAGTCCCAACGATGAACGACCTTACTGTGACATCTGTGAGGTCTTCGGCCATTGGACGGAGTCCTGCAACGACGATCAAACTTTCTAAGGTTCCTGCTCCCCGCGATCCCTCAACATTCGTCCTCGCAATACTATGCCTTGAATCAAACAGTGCACAAAAGACTATTGTAAGTTTGTGTGGTTTTTCACTTGTGTGTTTACCACCGTATAAGCCTAAACCTTTCAGTCACTTTAAAGCAAGCATCCGTAGTTTACTCAGTGGCAATTTTACCTGCCTTTATTGCACTGAATGACTGTTAGGTGGAAAGAGGGTTTTAAGTTCGCTTCGGAAGAACCTTGTAGTGAATGTTCATTCTTTCTACGGTGGTGGAGATTCCACGGTTCTCTTATATTCTCGAAAGGTTTCAGATCTTTGAACTTCAGTGCTGACCTCCGGTGGAAGGGAGGCTCGACTTCTCAGCAGCCTTTCACATATCAACGAGTTTGGATGCCGAGAGAGAAGTATTAATATAAAGAGTAAGTTATTCTAGAATTGTGAAAATATCAAGATTTATATACAAAGAACACATAAGCGTGCTGCGATCGTTTGTTATCTTTAAGAACGACTGTTAGGAAAATTGGAGAaacggagagaaaaaaaaaaagaaccgcCATCTTGCTGTTTTTGTTACTTCAAAGTCAGCGTACGCTTCCCAGGTTGTTTGTGAgacatttatttgtacaaatatcAAAgggggactttttttttttttcgaaaataAACGTCTAGAAATATCTTtcaagtgcaaaaaaatattctttgttGTGTTGTATGTTAATGCCAATGTGCtgctctaaaaaaaattatgtgtgaCTGGCCCTAAAGAGCATCCCGAGCTGTCTGAGGAAAACATAGGGCTATTTGGCTCTTGTGCGAGCCGGACGCTGTTTTTTTGACGATGAAGCTGCCTGACAAATGAAGCAGTGAGTTAcaataaacattgttttcaaaTACCTTTTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250952.1 lncRNA downstream 447476 26372619 ~ 26373822 (-) True LOC122344941
TU58531 lncRNA downstream 667595 26153465 ~ 26153703 (-) True G39585
TU58525 lncRNA downstream 702215 26118474 ~ 26119083 (-) True G39579
TU58520 lncRNA downstream 1037707 25782979 ~ 25783591 (-) True G39574
TU58518 lncRNA downstream 1092828 25728237 ~ 25728470 (-) True G39572
TU58747 lncRNA upstream 24742 26876590 ~ 26883175 (-) True G39712
TU58749 lncRNA upstream 24742 26876590 ~ 26883175 (-) False G39712
TU58799 lncRNA upstream 230153 27082001 ~ 27084786 (-) True G39738
TU58800 lncRNA upstream 247967 27099815 ~ 27107385 (-) True LOC122345426
XR_006250928.1 lncRNA upstream 264119 27115967 ~ 27146962 (-) True LOC122344810
XM_043238366.1 mRNA downstream 661 26816920 ~ 26820637 (-) True cdca5
XM_043238941.1 mRNA downstream 11361 26802384 ~ 26809937 (-) True si:dkey-273o13.3
XM_043238940.1 mRNA downstream 21252 26796255 ~ 26800046 (-) True rom1a
XM_043239283.1 mRNA downstream 32280 26769931 ~ 26789018 (-) False rps6ka4
XM_043238617.1 mRNA upstream 2188 26854036 ~ 26859879 (-) False zcchc8
XM_043238616.1 mRNA upstream 2188 26854036 ~ 26859879 (-) True zcchc8
XM_043238619.1 mRNA upstream 11557 26863405 ~ 26869594 (-) False rsrc2
XM_043238618.1 mRNA upstream 11557 26863405 ~ 26869594 (-) False rsrc2
XM_043238623.1 mRNA upstream 11557 26863405 ~ 26868994 (-) False rsrc2
unassigned_transcript_1081 other downstream 709896 26111332 ~ 26111402 (-) True trnag-gcc_64
unassigned_transcript_1080 other downstream 711728 26109500 ~ 26109570 (-) True trnag-gcc_63
unassigned_transcript_1079 other downstream 719889 26101339 ~ 26101409 (-) True trnag-gcc_62
unassigned_transcript_1078 other downstream 729302 26091926 ~ 26091996 (-) True trnag-gcc_61
unassigned_transcript_1077 other downstream 731510 26089718 ~ 26089788 (-) True trnag-gcc_60
TU59072 other upstream 531073 27382921 ~ 27398720 (-) True isca1
TU59237 other upstream 1037275 27889123 ~ 27895454 (-) True LOC122344874
TU59335 other upstream 1403980 28255828 ~ 28264704 (-) True G40080
TU59455 other upstream 2608737 29460585 ~ 29490204 (-) True G40182
XR_006251000.1 other upstream 2765151 29616999 ~ 29655061 (-) False eng

Expression Profile