RNA id: XM_043239176.1


Basic Information

Item Value
RNA id XM_043239176.1
length 4758
RNA type mRNA
GC content 0.36
exon number 7
gene id zfpl1
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 25231235 ~ 25263128 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCCCATAGACATATAAATGACTAGAcgcttcttttttgtttttattatttccaaaatatGGATACAGAATATAGGGGAAAacgatttttaaataaaaacagtgccAGGAGTACAGGGATTACCAAGATTATTAACATAACAATTGATTTCAAAAACGTAACTCGGTCACGTTTGTGGCCTTAAGGTTGTGCTTGGTGACGCAATTTCACTGCGACGGTAGCGGAAGAGACGTGGCAAAAATGCTAACTATTAGACGCTATAATAATATTGAGGAAAGTACTGGGCAGTTGTGTACAGTTTCATGTTGATGTTTGCACCGGTTTGTTTTTGACTcgtattttcttcttcttttaagGAAGAACATGGGTTTGTGCAAGTGTCCTAAGAAGAAGGTAACGAACTTGTTCTGTTTTGAACATCGTGTCAACGTTTGTGAGCACTGTCTTGTATCCAATCACAATAAGtgtaTTGTACAGTCATACCTACAGTGGCTACAAGACAGCGATTACAACCCAAACTGCAGCCTGTGCAGTCAGCCCTTAGATTCCCAGGACACTGTTCGGCTAGTTTGTTATGATTTATTCCACTGGTCATGTCTGAATGAGCTCGCCTCCCGTCAGCCCCTCTACACAGCACCTGCTGGGTACCAGTGCCCAACATGCCAAGGTCCTGTTTTCCCACCTTCAAACCTGGCCAGTCCTGTTGCAGACATGCTGAGAGAGCAACTGTCCTCTGTCAACTGGGCCAGAGCAGGACTAGGCCTTCCACTGATTGAAGATCCACCAAAGAGTGAGGAAAGTACAACACATGAGGATACGAGTTACTCTGAATGGTCATCTTTTGAGACTATATCCCCAAGAAAGGTATATGACACACGGGATTCAGGACAAAGTGCAGTGATGCAGATTGACTTTGATGACGATAAATACCGCAGACGACCTGCCCTTAGCTGGTTTTCACAGGTTCTAAAgAATCGTACTGGCACTAAGAAAAAGGCCCTCACTCTGAAACAGCGCATCTTCATGTTGCTTTTGGTTGGAGTGATTGGTTTCTTTACCCTCATCATAATTATGGCTAAACTGGGAAGGGCCTCAGCTGAGACGGATCCAAACCTGGATCCTATGCTGAATCCCAACATCAGGGTAGGAAACATGTGATGGATCCCCTTCCTGCTAAAACTCTATATGGATTCAGCCTGCAGTTCAACTTTTgcttataaaatgttatttgaaaaaGTTGAAGAAAGCATGTTCCTCAGGAATCTGGGACCAGTGTGAAAATTCAATTGTTTGGACTGTGGGAGAATTGTGTGACGTGGTGGTCAACAATAAAGAAGATAAAGATAGAAGTTGCACAACAAATCTTAAATTTCGCTTGGGTGATATTATTATAGGCTCTATAAGTGTGCAACTGTGTATTATTTAGCTCTGTAATTCTCCCTTGCATACCTTTACAATTGTTGTATGAAAATTGGGATAAAAATATGCCATTGTATTGAAATCTATCTGTCTATTGTTTCTCTGAGGTGTCAAActtttgattgcatttattaattgctGATCAATTAGCAACCCCTGCCTGCGAGATTAATTTTAACATATGTAAAGTTTCTTTGCTGTTgactgtaaaaatgcaaaactgatttaCTAAAGcatctgaaaatgttttggttgGCATGCTTTAGTGGCACTATTTTAgtcattatattttagtaaatacaACCTTTACAAAAGGCAGGTGATAACTGTactcttttgttttgtagttCATAAAGAGTGCACAACTGTCTTTTGTCTGGGTTGTATTCCAtcccaaaaattatttaaaacattaagccTGTTTTAAAGCTAGTTTTTGTGATATTATAATTGTGCCAATTCACCCTACGCTAAAAAAATGCCATAAACTGACAACTTGCTGACAGACAAAGCAAGTTACTTCTGGTATGAAACACAGTCTCAGCTTTCAAGTTTTgttatttaagaaatgtaaaacaataaacagtttTGTGACTTTCTAATGTTTAAAACTTGCAGAACTCCCCACTGCAATCCAAAACGTCAAACATATCTATGTACTGCAACATTTCGCATATTTCAGCTCCTGTTGCATTTTAAGAAAGCGATCATCTGGGTTAACCTTACAGAGATTGCTTAACTGTAGTATATACCATAATATTCACATTATCTCTGATTGTAGTTTacatgttttctctttttttttctcctctgtaAGTGGTTTTCCTAATTTGTCAGTCTACTGTGATTATAGTACTATTGGGTCAGTCCATATCAAGTGGTCCAGTTGATCTTGCTtgacaatttttcttttttttttttttttttttttccttttgagtGATTACCCTATGTACTGTGTTAGTATTTGATATATGGTCAGTTTATAATACCATTTTTtcaactcccctagagttaagatattgagttttaccatttttgaatccattaaGCCTATCTCTGAGTctgtagcacttttagctgtagatTAGCAGggatcattaaaaaacaaaagttgtttataaatgtgctatataattaaacattacacacacacatatatataaataatagatatGCACGCGAATACAAATACACCTttgaatttttgtaaaaattttgtaatttacatattcagatttttcattatgtgatttttatttttattactttttatttagaaaacaaaaagtttctATCCACAAAATTTGGTATTTTGAGGTTCTACTTGTGATTCATCCAGTCAGCGCTTCAAATGCACGCAAAAGGACCAATCGGGATCAACTTTCTTTGTTATGTTGCCCGACTTCTCCTTAACAGCAGGAaagattaaacattaaacaacaataattacataTCTGCATAATCAGTAAATGCAATGCACCATTGTGAACAAGTTCCACAAAAtggcactttttaaaaacatgatgtgatttttttttttcactcattaTTAGCATGTGCATAAAAAAGATGTTCATCTGCAAAAACTGAATGGGCTTGAATGGTTTTACTGCAAAATGTCCTCTGGCGGTGGTAGCGATGGTAAAATCATCTGCTCAGATCAAACCCTTCTAAAGCCCTATTTAGCGTCCAGGGCGACGCTGTTGATCAATCGGGACACTTGTCACTATTTAATACTAATCCCGTGCAAATAGGCCTTATGTTACGAAAGGTAAGGATGTatgctttattctttattttatttattttttaaattgttaaatatcaGGGGAACAATTGTATAATAATTCCATccatgttaaatataaatctatagaTGTGAGAATTGtggtattacaaatttataaaatgttaaatgtgggTTTCAATATAACCATTTGAATGGAAAAGTTATGTATATTGTGACTTACATtataagagcaggaagcccaggCCCTGATCAGTTcctgaacatctggtaggtttCCCAAGTTAAGTGTTTATGCTAATCTCAAGATACACTGTTTCAGGGTTTTTCTAAcgcctatgcatttgaatgacacttgtaTGCTAAACAGATCAAGGCTTGAAAAGTTCCTGTTTCTGTATGTACATGGTAGAAAGAATACCATGTCCTTTGTGTCAAACAATGAGATTTATGTTCGGTCATAAAAATTCCCTCCCACCCCATAACCGGACACCTGTTCATGTACACCTGTTCAATTTTATGAAAAAAGACTGAAACATTTCAATCAAAAATATCATCTACCTTTGTTAAAATATACCAATATATATGACCGGTACGTTAGTTTGTTATggataaaagttaaataaagccAAAAATCTACAACAAAAAGTATAGTACAAGATACATGTTTGAGCATAAGTGTAAGAGACTACCTTTTAAAATTGGTGTGTTAGACTCTGTTGCAGAtacaaagttaaataaaatagaactgACCAGTTTACCgcaatctgaaaaaaaataagaaaaagcatCAGACGTTAGTTAAAACAACAAGATAGAAGTCGAAATCTATgttgccattaaaaaaaaaaaaagttacaaattagaaaaataagaGAGAGAATCTCACTGTGATCtacaaaacatttgattattGTTAAAACAGCATACACCACTAATCCAAAATCTTATAACGTTACAATTTAGGAAAAACTAACTTTTGTCACAAGTTAGAAAAGTTAAACAAAGAGAAATCCTGCAGAGGGATTGTCAGATTCAAACTGggttgtcaaaaaaaaaagcatccgCTCCCAAACCACACCCAGGCCCCACTCCAGCCTCCCTAACACCTAACCCTGTTAGGAGAGACCCGCACGAAGacagattttaaacaaacagatgttttaacgttagaacaaataataaatcttttctttctaaacatttcttaacttATTAGGCCATTGTTGGTGTTTTAACATAGTTAGAGCTTTTTACACAACACATCCAAACCACAAGAAAATGGTTATTCAGATCTTAAAACTTGTTTAGTagttaaaacatacaaatggtGTGCACAAATATAAAGCCACACGTGGCAGAACTGCAGTTGAGTTTTGACTCAATGCTGAAAGGAACTAATGCTGTCTCTTTCACTTCCAGATAGCAGCTTGTGACCGATCAACCCAAAGAGTTGTATTTATGAACTCACTGCACCTAAGAGATTGGATGACCGAGCACTACCAAGCACTGGAACACCTACCCATCGCCCTTTCATCTTACCcctgtattgtttgttaataaaGCCTCCCTCCCGGGtctttattttga

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0016020 membrane cellular_component
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58318 lncRNA downstream 54886 25175308 ~ 25176349 (-) True G39401
TU58301 lncRNA downstream 179717 25051181 ~ 25051518 (-) True G39384
TU58290 lncRNA downstream 211744 25019249 ~ 25019491 (-) True G39377
TU58288 lncRNA downstream 214394 25016561 ~ 25016841 (-) True G39375
TU58279 lncRNA downstream 306288 24924707 ~ 24924947 (-) True G39366
TU58377 lncRNA upstream 34748 25297876 ~ 25299229 (-) True G39456
TU58379 lncRNA upstream 36395 25299523 ~ 25299916 (-) True G39458
TU58391 lncRNA upstream 190384 25453512 ~ 25453834 (-) True G39470
TU58411 lncRNA upstream 265755 25528883 ~ 25529111 (-) True G39490
TU58424 lncRNA upstream 294168 25557296 ~ 25557522 (-) True G39503
XM_043240627.1 mRNA downstream 327946 24814609 ~ 24903289 (-) False LOC122346005
XM_043240626.1 mRNA downstream 327946 24814609 ~ 24903289 (-) True LOC122346005
XM_043240635.1 mRNA downstream 448587 24759478 ~ 24782648 (-) False taf6
XM_043240636.1 mRNA downstream 448587 24759478 ~ 24782648 (-) True taf6
XM_043240457.1 mRNA downstream 472567 24754202 ~ 24758668 (-) False LOC122345923
XM_043240265.1 mRNA upstream 40347 25303475 ~ 25446662 (-) False LOC122345796
XM_043240264.1 mRNA upstream 40347 25303475 ~ 25446661 (-) True LOC122345796
XM_043240267.1 mRNA upstream 40347 25303475 ~ 25446660 (-) False LOC122345796
XM_043240266.1 mRNA upstream 40347 25303475 ~ 25446660 (-) False LOC122345796
XM_043240268.1 mRNA upstream 207524 25470652 ~ 25523837 (-) True LOC122345798
unassigned_transcript_970 other downstream 236003 24995162 ~ 24995232 (-) True trnag-gcc_23
unassigned_transcript_967 other downstream 239140 24992025 ~ 24992095 (-) True trnag-gcc_22
unassigned_transcript_964 other downstream 298257 24932906 ~ 24932978 (-) True trnak-cuu_7
unassigned_transcript_963 other downstream 304184 24926980 ~ 24927051 (-) True trnak-cuu_6
unassigned_transcript_962 other downstream 307015 24924148 ~ 24924220 (-) True trnak-cuu_5
TU58333 other upstream 18758 25281886 ~ 25282286 (-) True G39413
TU58432 other upstream 298846 25561974 ~ 25568686 (-) True LOC122344921
unassigned_transcript_987 other upstream 614543 25877671 ~ 25877755 (-) True trnal-cag_26
unassigned_transcript_988 other upstream 624230 25887358 ~ 25887441 (-) True trnal-cag_27
unassigned_transcript_989 other upstream 625386 25888514 ~ 25888596 (-) True trnal-aag_30

Expression Profile