RNA id: XM_043239186.1


Basic Information

Item Value
RNA id XM_043239186.1
length 3854
RNA type mRNA
GC content 0.46
exon number 2
gene id fam78ab
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 29838639 ~ 29846990 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCTGATGCGGTGACGCGCACAGCGCTGCGGGACGGAGGCTGAGCGCAGCGGCGGCGCTAGGATGAGGATGGATTATAACTGATGAAGAGAGACGAGCAATGATGGGCTGTTCATCACATCATGTGTGTTCGTGACAGCCGGACTGTTTTATTCACCTCTCATGTTTATTCACGTGGGGTTGGTGAAGTTCACCTGATGCTGAGACGGATCGACTACTCATAAGTGCACAAGAAAGTGAGCTTCCTCCAACTGAACCTCAAGGACAAACTCACGGAATGTAAATATTCTTCGCGGAAAATCACTTTTCCAGCGTTACTTTCGATACCCAACGCGTGCATAGCTATTTCGCGCGCTTGTAGTTGAagatctctctttttttgcgTACAAAATGCCAGCATTATTCTGAGCGGATGGATTTaacctatttattttaatctaaaagaAGCGATGTTGTGAGAGTTATGACGCGGAAATTCCCGTTTGACGATGACTGGAGAACGTTATGTGTGAACGGAGCGTTATAACGGTCCGCCAATGACGGAAAGTTGACGAacgttgtttttatttattttcttttgttttatttcaatcttCAACAGAATAACGCGATGCTTTTGTTAATAGGACGCGTTTTATCTAGTCCTGACGCGACACCGCGACGCGTCGTTTAATGTCTTCTGAGGGACGGTAGTGTGCGTTATTCAGAGAGACAGCGTCTGGCGTGCGTTCCTCAGAGGTTCAGTGTGTAGTGTGCTTTCTTCTGAGGGACAGCGTATAGTGTGCGTTCTTCTGAGGGACAGAGGGTATAGCGTGCGTTCTTCTGAGGGACAGCGGGTATAGCGTGCGTTATTCCGAGGGTCAGTGTGTGTAGTGCGCGTTCTTCTGAGGGTTGATGTTCTGCTGGCCGCTCGTGCTGGTTGTGATGGGCTGTATTCAGAGCATCAGATGCAAACCCAAGAGTTTCCGGGACAGTATCATGGTTCTGGAGGTGAACTCCTCCATCGACTCGAACCCCACCAGCATCGACGAGTCCTCCAGCGTTGTGCTGCGCTACCGCACGCCGCATTTCCGCGCGTCCGCCAGGGTACTTGTGCCGCCGGTGGCCGGTAAAGAGAGCTGGACGATCGGCTGGATCCAGGCGTGCAACCACATGGAGTTTTACAACAAATACGGATCCAAAGGGATGTCCAGCTGGGAGCTGCCAGACCTCAGAGAAGGAAAAATCCAAGCCATCAGCGACTCAGACGGCGTCAACTACCCCTGGTACGGCAACACCACCGAGACCTGCACCATCGTGGGTCCCACCAAGAAGGACACCAAGTTCACCGTCAGCATGAACGACAACTTCTACCCCAGCGTGACGTGGGGCGTCCCGGTGAGCGACAGCAACGTGCCCATGCTCAGCAGCATCTGGAGGGACCAGAGCTTCACCACCTGGCTGGTGGCCATCAACCAGGCGTCCGGCGAGATCCTGGTGCTGCAGACGGTGCGCTGGCGCATGCGTCTGCACATCGAGGTGGATCCGGACAAGCCGCTGGGACAGAGAGCCAGGCTTTGCGAGCCCATCTCCCAGGAGCAGCCGCAGGTGCTGGGCAAGAACGAAGCCATCCCGCCCAACGCCATGGTCAAACCCAACGCCAACGACGCTCAGGTGCTGATGTGGCGTCCGCGGACGGGCGAGCCGGTGGTGGTCATCCCTCCCAAACACTGAGACCAAAACCGGTCAGGAATCACTGTGCTAAACGCCGCTGCAAAAAGACAAAGTTGGGAATACTGCGTCTCGGAAAGAGCGTTCACGCTGCCTTAAGTTTACATTGCTTCCACTGCAAACGTTTCGCCTTAAACCAAGTGAAATGCAGTAAACCTCGCGCGTTCTACCTGTCTGTAGATTTGCACTGGATGTGTCCCAGTTAGTCGCGGTCTAACGGGACCGCGATGACCGCCGCACGCCCAACCAAACGAGGACACGGTCATTATGCATTCAGTGTTTTCAGCAGGAGCTTCAGTGTTTTAGTTTTCTGTCAACCAGCCACTTCCAGTGTGTTTTACAAGAGCCGAGagtccaaaaatatatatcttttctaCTACATGTGAGTTTGCCGTGTCAGTCAGTGTCAAGACGTCGTGGCCAATCGATAGAGCGAATGCGCAAAAACCATCCCTTCTCCCGGTGTTTGAATGAGACGCGTGTGTGCGGCGACAGGGGCACTGAACGCTGCATCTGCTCTCAAATCGATCTGCTCCTCAAATCAAACACCATCAGCAGAAGCTGAAGGGAGAAACGTGTTGTTCCCGAACGAACGCGTTGAGAAAGCACGTGTCCAGGCCACAATTCTGCACAAGAACTAGACGTTATTTTCATGGCAGTGCTACAGATATGAGCGTAACGTACCTCAAAAGTTGGaaatgatttttagcattttttgaaagagctgctcaccaaggctgcatttatttgatcgcaaatgcaataaaaaagcaactgtttaatgtgtgaaaaagggaagaaattaatacttttatttaataaaagagacaatttctgtttcaaataaatgctgttttctttactttctattcatgtgtgaatcctgaaaaaagatGTATCATGGTTTTCTACAAAACtactgataataatcataagTGTTTAGAATATAATTAGAATacagatttctgaaggatcccgTGACGCTGaagattaatattaatgaaagacACTAACGGCTGACAGTAATGCTGACAAGTCAGCTttttcacagcaataaattacattttaacaagtcaaattttattttatcaaataaaaacaactattcTAAAcgttaatatttcacagtttttcctgtatttttaaaaataaatgcagacttggtgagcagaagagacttctttgaAAAATCTCAATAcgttccaaacttttgaccagtagTGTGTAAATAACgcgtttttataatatatttttttgcattgcagtgTTGAACATTTGAAGGCGGATCTGCTTGACATTCGTGCAAATGACAATTAAGCACAATTTTTATCCATTCTGCAACTCAAGATAAAATGCACTTCAGCGCTTCCTGATGCCATGTGTTATTGACCCATCGAAGGCCTTATTACACTGAGATGTGATTGTGTTGACGGACAGATGAGCGTTGATGTGATTCAGTCAAACGCTGACCAGCATTTATACGCGCACAAGGATCCAACACCACGACTGACACTGAGCTTTACGTCCATCTTCATCAGCGCTGGACGGCCAGAGACTCGTGTGTGTTTCATTTCATCAGACGCTTAAGTTAATCTTGTGTGTTTGATCTGCTCACGTGATGCGAgtctgcaggtgtgtgtgtgtgtgtgtttggacgCGTATACACAACATTACCGAAGAACTTTAGTTCAGACTTCTGATATACTTCCGGCAGACTTTTATTTATCACCAgatcaaaattaaatgtttgtgttcAAGTCAAAACTCTCACATCCTGCTGTGAACAGACACATTACGACATCTTACAGacaataaattcataataaatcCTCCAATCATTTAGTTCTGGATATGAAATAGTAACACTGAATCCCTGCAGCTCCATTAGCAACATGTTTATACTGGgagtgtgtgcgagagagagcgagtgtgtgtgtgtgtgtgtgtgcgtgaggcGTCAGACTCGTTTTTCGCTTTCTCTTTTCAGAAGGTACGATGGGATTTCGGGCCGTTTTATAGCTTGACAATAATACTTGAAAAACAGACGTGGGAAACATTTCAAACTGTGAAGATGCACATTGTGAGAACGAAACGTTCAAAGACAGCTGAATTTTTCATGAAGAATACAATAAAACTGTGAGATTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59589 lncRNA downstream 32837 29801194 ~ 29805802 (-) False G40268
TU59596 lncRNA downstream 32837 29801194 ~ 29805802 (-) True G40268
TU59587 lncRNA downstream 152912 29685128 ~ 29685727 (-) True G40266
TU59585 lncRNA downstream 191626 29646617 ~ 29647013 (-) True G40264
TU59464 lncRNA downstream 513565 29323982 ~ 29325074 (-) True LOC122345120
XR_006250938.1 lncRNA upstream 192464 30039454 ~ 30046148 (-) True LOC122344857
TU59775 lncRNA upstream 195650 30042640 ~ 30042867 (-) False LOC122344857
TU59777 lncRNA upstream 206622 30053612 ~ 30054797 (-) True LOC122345788
XR_006251033.1 lncRNA upstream 206639 30053629 ~ 30054797 (-) False LOC122345788
TU59797 lncRNA upstream 258852 30105842 ~ 30106738 (-) True G40422
XM_043238496.1 mRNA downstream 140013 29673233 ~ 29698626 (-) True gpsm1b
XM_043238497.1 mRNA downstream 168454 29661018 ~ 29670185 (-) True ak1
XM_043238498.1 mRNA downstream 171806 29661018 ~ 29666833 (-) False ak1
XM_043239534.1 mRNA downstream 183590 29614719 ~ 29655049 (-) True eng
XM_043239776.1 mRNA downstream 502951 29325983 ~ 29335688 (-) True LOC122345545
XM_043238807.1 mRNA upstream 12562 29859552 ~ 29880103 (-) True prrc2b
XM_043238808.1 mRNA upstream 14287 29861277 ~ 29880103 (-) False prrc2b
XM_043238632.1 mRNA upstream 63922 29910912 ~ 29919495 (-) True LOC122344958
XM_043238646.1 mRNA upstream 77712 29924702 ~ 29928675 (-) True LOC122344966
XM_043238641.1 mRNA upstream 81833 29928823 ~ 29943177 (-) False sapcd2
XR_006251000.1 other downstream 183578 29616999 ~ 29655061 (-) False eng
TU59455 other downstream 348435 29460585 ~ 29490204 (-) True G40182
TU59335 other downstream 1573935 28255828 ~ 28264704 (-) True G40080
TU59237 other downstream 1943185 27889123 ~ 27895454 (-) True LOC122344874
TU59072 other downstream 2439919 27382921 ~ 27398720 (-) True isca1
TU59650 other upstream 79395 29926385 ~ 29926833 (-) False LOC122344966
TU59790 other upstream 244959 30091949 ~ 30093513 (-) False rnf170
TU59791 other upstream 244959 30091949 ~ 30093513 (-) False rnf170
TU60232 other upstream 753911 30600901 ~ 30603493 (-) False fubp3
TU60233 other upstream 757854 30604844 ~ 30613141 (-) False fubp3

Expression Profile