RNA id: XR_006250980.1


Basic Information

Item Value
RNA id XR_006250980.1
length 2616
RNA type transcript
GC content 0.53
exon number 14
gene id anapc2
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 24587724 ~ 24594116 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCATCAGCGCGCGACAAGCGTTTGAAGAAAAGCGCTATAATTTGTAGACGTAAAAGCTAAACTGGATCTTTTATATAGCTTTGACCATATGATTTTGGACAAAACAGACAcggattaaaatgaaaatccacGTACAGTAACCGCGACGAACATTATTCTTGTATCCCAGGATATATGACTATTGTTTACAGCCTAAAAGAGGAATGAACGAGGTGCAGTCAATGCCGCAGGGACTTTCAGCAGCCTGGGACACGGTGACATCTGCACTGGTGTCTCCTGTGCCGCCAAATGCTTCGACCGATGATGTTCTCTCTGAGGCCTTGGCCTTGCTGGGTGTTCATGGACTGGGTCAGTATGTGGAAGGATGGCTGCTGGAGACCCTGCAGGTGCGTCTGACTACTTCTGTGGCTCCAGAGTTCTGGACGGGGCTCAAGCAGCCAGAGGGGGATTCACAGGAGAGGGACAGGGCAAAGGCTTTACTAGAAGCTTTCAGAAACCTTCTCCAGGAGCTGCAACCTTTCCTTGATGGTCTTGAGAGACTGGGTTCGTGGCAGGATGAGAGCCGTGGGGGTCTGTCCGGTCCCGGGGCCCGGGGTCTCACAGAGAGGGCTTTCTCTGTCATTCGTGCCATTCTCCTGTTCTCCCCTTCACCTGTGCTGCAGGAGCGCGTGTTGGAGTTTTACAGCCGCACGTTCTCCGTGCACATGAGTCAGGCAGGGGAAGCTGTGGAGGCTGAGGAGGGCGCCAGCGAGCACGATGAAGGTGGTTTGTGCCCAGGCTGTGCCGTCCTCCCTCACCTGTGTTGGTGTCAGGAAGCTCTAGAGCAGCTTCAAGAGCTCAGCCACATACTCTCCACACTACAGCTGTTGGAGCGTGTGAGCTCAGAGGCTGTGACCAGCATCCTGCACCAGCTGATAGAGCAGAGGATGGAGCAGCGCTGCAGGGGAGAATACGAGAGCTCTTTCCTGACAGACTTTGATGATTGGTTGGGGCAGGTTTTGGGATGGCTCAGCAGGGTGTTTGCCAGTAAGGTGGAAGATGTGGGCAGTGATGGCACACCTACGGATAGCACAAGGGGTCAGCCGGCCAACGCTCTCCTCCAGCGCTGGCACTGTCACATGCACCAGTTCTTCTGCCGTATTTATGTGAACATGAGGATCGAGGAGCTCTTCAGCATCATACGAGATTTTCCAGAGTCTATTCCTGCCATCGAGGATCTTAAGTTCTGCCTGGAACGGACCAATCAGAGACAGCAGCTTCTTGCCTCCCTCAAATCGGCCTTTGAAACACGACTGCTGCATCCAGgaGTCCACACATCTGACATCATCACGGTTTACATCTCTGCCATCAAAGCTCTGAGGGAGCTTGACCCTTCTATGGTGATCTTGCAAGTGGCCTGCCAACCCATTCGCAAATATCTCAGAACGCGCGAGGACACTGTGCGTCAAATAGTGGGCAGTTTGACAGGAGACGCAGAGGGTTGCACTGATCTAGCCAATGAGCTCTCTCGAGCTGACCCTGTTACCTTGGAGACACAGGATAGTGAAGATGAGGGGAGCGATCCAGAGGACTGGACCCCAGATCCCACTGATGCTCTCACAGaTAAAACTGGCTCTAAACGGCGCTCTTCCGACATCATCAGTCTGCTGGTGAGCATTTATGGAAGCAAAGAGATCTTCATTAATGAGTACAAGACTGTTCTGGCTGACCGACTTTTGCATCAGCTCAACTACAACACAGCCAGAGAGATTCGTAACGTGGAGCTTCTGAAACTGAGGTTTGGAGAATCCCACATGCACTACTGTGAGGTGATGTTAAAGGATGTAGCAGACTCTCGGCGGATCAATTCCAATATTCGCGAGGAAGAGAGTCGTCTTCCTGTAGAGGAGCAGTCAACGCTACCGCTGTCTTCCATGATCATCTCATCTGAGTTCTGGCCCCAGCTGAAGGAGGAGAAGATGGAACTGCCTCCGGTCATCTCTAAAGCCATGGAGGATTACACGCACCGCTTTGAAAAACTTAAGgCCATGAGGACTCTGAGGTGGAAGCCTCACTTGGGTTCTGTTACGCTGGATGTGGAGCTGGAGGACAGAACCATCGCAAACCTCACCGTGACTCCTATCCATGCTGCCATCATTTTACACTTCCAGGACAAAGGTTTTGACCTCCAGCGTTATGAGCATGTGAAATACCCAGTGTGCCACAGACCTCACTACCTGTTGTCCTTCATTAGGCACGTGGACGTTGGAAGAGCTGAGTGGTGTCCTAGGCGTGCCACAGGAGATGGTGCGCAGGAAGTTAGCTCTGTGGCAGCAGCAGGGCGTGCTGCGAGAGGAAGCCGGAGGTCGATACACTGTGCAGGAGACAAGCTCTTGCAGAGAGAGATCCGACAGGAGCGTCATGCTCATAGACAGTGATGAAGAGGGAGACTCCAATACCGCAACGCAGTCGGAGCAAAGAGAAGAGAAACTACAGCTGTTCTGGGCCTACATTCAGGCCATGCTGACTAACCTGGAGAGCATGACTTTGGAGAGGATACACTCCATGCTGCGAATGTTTGTGGCCGCCGGATCTGGGGTTACTGAGATGGATGTGAACGAGCTGCAGGCGTTCCTG

Function

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0031461 cullin-RING ubiquitin ligase complex cellular_component
GO:0031625 ubiquitin protein ligase binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58194 lncRNA downstream 66007 24521562 ~ 24522021 (-) True G39298
TU58192 lncRNA downstream 67641 24519667 ~ 24520387 (-) True G39296
TU58148 lncRNA downstream 97236 24414900 ~ 24490792 (-) True G39274
TU58150 lncRNA downstream 97236 24414900 ~ 24490792 (-) False G39274
TU58164 lncRNA downstream 108973 24470611 ~ 24479055 (-) True G39285
XR_006250987.1 lncRNA upstream 29443 24623559 ~ 24624878 (-) True LOC122345299
TU58207 lncRNA upstream 29737 24623853 ~ 24624852 (-) False LOC122345299
TU58247 lncRNA upstream 136096 24730212 ~ 24730391 (-) True G39337
TU58251 lncRNA upstream 137523 24731639 ~ 24732075 (-) True G39341
TU58240 lncRNA upstream 152556 24746672 ~ 24748576 (-) True naa38
XM_043238812.1 mRNA downstream 2893 24546148 ~ 24585135 (-) True npr2
XM_043240303.1 mRNA downstream 57065 24530408 ~ 24530963 (-) True pmchl
XM_043239350.1 mRNA downstream 178515 24406995 ~ 24409513 (-) True cd180
XM_043239343.1 mRNA downstream 270197 24298530 ~ 24317831 (-) True LOC122345313
XM_043239462.1 mRNA downstream 310724 24265464 ~ 24277304 (-) True tmc2a
XM_043239195.1 mRNA upstream 2971 24597087 ~ 24613743 (-) False tprn
XM_043239194.1 mRNA upstream 2971 24597087 ~ 24613730 (-) True tprn
XM_043239298.1 mRNA upstream 21242 24615358 ~ 24616916 (-) False tmem203
XM_043239297.1 mRNA upstream 21242 24615358 ~ 24616844 (-) True tmem203
XM_043239291.1 mRNA upstream 39186 24633302 ~ 24652541 (-) False traf2b
TU57904 other downstream 387532 24197705 ~ 24200496 (-) True G39113
TU57720 other downstream 700348 23887303 ~ 23887680 (-) True G38973
TU57636 other downstream 831440 23751880 ~ 23756588 (-) True G38917
TU57575 other downstream 983295 23602244 ~ 23604733 (-) False LOC122345364
XR_006251119.1 other downstream 2547994 22039901 ~ 22040034 (-) True LOC122346224
unassigned_transcript_960 other upstream 323704 24917820 ~ 24917893 (-) True trnan-guu_1
unassigned_transcript_961 other upstream 323889 24918005 ~ 24918076 (-) True trnak-cuu_4
unassigned_transcript_962 other upstream 330032 24924148 ~ 24924220 (-) True trnak-cuu_5
unassigned_transcript_963 other upstream 332864 24926980 ~ 24927051 (-) True trnak-cuu_6
unassigned_transcript_964 other upstream 338790 24932906 ~ 24932978 (-) True trnak-cuu_7

Expression Profile