RNA id: XM_043239195.1


Basic Information

Item Value
RNA id XM_043239195.1
length 5000
RNA type mRNA
GC content 0.48
exon number 3
gene id tprn
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 24597087 ~ 24613743 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TATTTCGAAATTGTGAAAGGgttaaagacattaaatgggCGGGTCTCGCTGTGTTTGACTGACAGGGCTCGCTTTAATCTCCACAATAGTAGAAAGTAGGGGGCGGGacatatgtaaaaacaaaaggtgTGCCTCAAGTCAAAATGACCAAATGAGGAGTCCACCCCGAGACGGGCGGCTGACGTCACGCTCGGAGGGCGGGGTCGTGTCGGTAGACTGGCACATCATCATCATGCAGGATACATTGTTGCGGCTGCAATGATGTACGAGAACGAATAAGAAGAGGCGCTGCAGGTACGGCGAGAGATTATTTGGTTTCACACGTACCCCTATAAAACCCGTTTCTCCCATTATGTCGGGCGGGGATCTTCGCGTTCTTCGCCAAGAGCCAGGGCAGGAGAGCCCGAGGATGCCGGCCTGGAAACGAGAGATCCTTGAGCGGAGAAAGGCGAAGGGCGGTGGGTCCGGAGCAGGTGCCGAGTCCGTCGCATCTCGTCTTAACGGCGAGGTAACGGCCAGCAAAAGCAAGGATGATATCAGCGGCGCACATTCGAGCAGGAACTATACCATTACCGCTGCCAAGCGCGCGACCAAAAGCCCGGATCTGTCACCGGTGAAAACAAAAGAGCACTGGCCATCCGCGGACCCGAGCCGTACGGAGGAGAGAACGGCGAGAGACAACGGAGCGCAGGAGAGCCTGGTGTTGCAAGAGAGCTTGGGTCCGCTGCAGGAAAACCCGTTCATTAAACTGGAAAAAGAACGCAAGAAGCGTCAGAGCCAAGAGAACGCCGCGCGACCGGTGCAGCACATCCTCGAGTTGTACGGCGGCGTTCCCGGGATACGGACTATACGCGCTGAAAATATCATCATAATTGAATCCGACCCGGAGTACTTCTCGGAAGGATGCGGTTTGAAGCATGCGTCGATACTGCAGCAGAACGGCACGGTGAGCGGATACAGCTCTCTCAATGACCTGTTAGACCGGAGAGGTAGTCCGGTTACGGAGATACGCGCGAAGGAAGTGGTCATCTACGATACTGCGCTTAGTAAAAGCGAGGAGAACCTCAGCACGCTGGGACGACCTGCGTCCGCCCCGCTAGAGGGGCAAGGAAGGGTGAGTCGCATGTTACAGAAATTTGACAGGAATTACGGCAAGTTGCAGGCCAAGTCACGCAGCACAGAAAACCTCCTGGACTTGGACTCGAGTCCTATCAGGCCAAGCTCCAGACCCAAGCCAGATGCGGTGCCAAAATGTCCGGTGTCCCCGCAAGCCGGCTCTCCACACAGCAAGGTCTTCCAAAACGTCCAGTCTTCCATGAGCAACCATCACGCCTCTCCTAGTGACTCGGGGAGTAGTACACCCGCTTCTGGCTCCCCTCAGCTGGTGTCTTCCACGCGTAGACGTTTCGAGGGGAGCGGAGGACGAAGTGTCACTGTGTATCCCAAGGAGGACACTGAGAGGTCTCCGTCCAAGCCTGTTAGGGAACGGGACTGGGATAGCACAGACGGGGCCTCTAAAGCCAAGGTGCCATGCTCTCCGGAGAGCCACCGTGTCCGTGCCGACTTCATTCCTAGCCCCACATCACCACCCTTATCGCCCAGCTTTGAGATCCGCCCGTCTCCTCGCCCAGATCTTTCTCTCCTTCCGCCTGGGGATCTACAGGCCCGTGCACTCGCCAACTTGCGACTCCAGTCTCGCAATTCATTTACCGTTATTCCCAAGAGTCGTGCGGCCATCTCATCACCCGGCAGCACCGCCCCGTCCAGCCCTGTCCTTTCCCCTCCGTCCCCACGACCCCTGGTGGGTGTGGCAGCCTCAGAGCCCGCAGTGCCAACCCCCTCGCCCGCTTCATTCATACCCTGCACACCAAAGCTTACGGAAAAggtgaccatagaagccaaaacagGGTCTCCGCAACATACCCCACCTGCCACACCCACTTCTCCAGCCCCACCTTCTCTGCCCTCAATTGGCTCACCCGTCAAACCAGCCCCATCTCCAGAAGAGCCTCCGGTTGATAAGTTGCCTATCACGAACATTGATGACATAGTTGTGGAGCCCACGCCACCTGTCCTGAGCCCTGCGGTGCAGAGGCGCAAAGGAAATACGTTTACAGTTGTTCCCAAACGGAGGCCCGAGGCCCAGTCTGGCCCAGCTGAGACCCCAGAAGTCGTCAGTGAATCTCAGAGCACACCACAGGCCCCTTATGCCCATCTGGGGACCCTGATTAAAAAGCGTTACCCTGCTGCAGAGGAGATAGAGGTCATTGGGGGCTACCTCTCGCTCGGGCGATCCTGTCTCTCGAAAACTGGCTCAACAGGAAAAAAGCTGAACATATCCTTCAACGAGTCCAGCCTGCAGAGCACTTTCGAATACCCGTCTGAGAGCAGCGTGTGGGACAGCGGAGAGGACGAAGAAGAGGGAGAAGAAAAGGGAGGAGAAGATGACGGAGGGCTCGTCGCAGGGAGGATAAGCATTCCTCGTGCCAGCTACACAAGCTCACCCACTCACTCCAACAACACCACGGCTGACACCCGCTGATAGCTCCTCTCTGTCAGACTTCAGCAGCGAACCAGCGCTCTACTTCTAAAGCTTCCAGATATCTGGAATATATCCGGGACCAACCGTTGCCAGCCAGCACCAGTCTGGACGCAGAGAAACAACTTCCAGAACAGTGGGACCAGTAGCAAGCAGCACGGAAACACCGTCATGGTGAACAGCGGGACCGTCCTCACTGCTGATCCACACAGCGGACGCGTCACTCACGTTTAACCTCCTGTTGCCACCGATTGTGATCGTGACGGACATGGAAAACAGCTCAAACGGCCTTTCGGCTCCTGAATTCCACTCTTCCATCGCGTACTTGCTCTGCGTGTGTAATCCTCGCCTCATGAAAGTGACCAAATTtctaaaagagagaaagacaagagaCTTTTCTTAAAACCGAGAAGGAGActtgggagtgtgtgtgtgtgtaacgggACGATGTTAGGGTGAAGcaacaaaaaatgaaacatgtgACTTATGTATGACTGGTGAAAGGGTGCCACAATCGTGttctttgtgatgtttttttgtatgtgcatgtgtaggTCTGTATCGACATGACTCCCAAACTCTAGAAGTCAAGGTAAGGTTCATTCAAGGTAAGCGTTTCGAATGCGCATACCGATATACACAGCGGGTTAGTGCTGACTTAGTGATCCTAGATCTGTTTTAAAGAGCAGTTTTTAAttggcttttcttttttttatggtaaTAGAATTTATTAATCACTCATAATTTTAGCCATGATTCGGATCACAAATGCAAGTCAGTCTTGTGAAGACATGCCCAGGTTATATTTCACCTCCTAAATACAACAAAGTCAGTTTTTAGGACTACTATTGTGATGTACATCTTAGTGACATTTACACTTCTCATATTTTCTCTCATATGTTCTCGTTATAATAATCTAGtgcttttacatgaaaaaaaacatcgtAATACAGCTTTCATTTAATGATCCCTAAAATACTGCTTAAGCAAAACGTAacgtatgcatttatttgttcccTCGCGGTTGGAGTGAAATATGACCCGGGCAGGCTTTGTGAGATTTATGCTGTCAATATTCCTAGTTGAGTTAACGTTTTGAGCTGGACGTTCTTGCAGTACGTATGGGGAGTGGAAACATTAGTTTGTGGGTTTGTGAGTGGGCACGCTGTATGTATGGGCcacgcgtgcgtgtgtgtgtgtgtgtgtgtgtgaaacaccAAGACTACATACACACCACGCCAACTGACTTGAGTGTGTCATATCTGTTAAATGACGTGTCTCCTCAGCCTCTCCGACCAGTATTGATGTATAGTTTGTAGACTCCAGGATGaagttttcataatttatttcatgcatcTTTGAtcactttttcatattttttgtcacAGGGCAAACAGAAGCACACTGTTTTCTTTTGATAATTGGTTACATGAGCGCTGTTAGGACAGCTTACATCCTAGTCTTGTGCGTCTGTACTCATTCATTtgcactgttttgtttttgctttattttgcaCCTTACGCAGCTCTCGGTTGAAATAATGCCTTTTAGGGATCTAATATCACTTTCAATATCACTAGTATGCGTATATTGGGAGCGTAACATTGACTTGAAGCACCAGCTATAGCCCTTATCAGCTCAAAactgctgattaatattttctgcacaattattattcttttttttaagactcTGGCTTTGTTCACACAGCACACCGTTCAGTCTTTaggactgtctgtctgtcttattCTAAAAGTACATTTGTTCAAATTGTGTACGTCAGGTTTTGATCTTGTTAACagtttttaatgataataataataaatgttaccctaaaagcatattagaatgcttTCACTGAACAGCTTTAGCATCCATGggatatttttcaaaaatgtaccaAAACTGAAATTAGTATGTTGCTGCAGTATTcgacaatattaatgtttttactgtatttttgctaaAGACGGCCTTTTTTGAACGGTAGTGCATTTAAAAGTGTCTGTCTGAACAAAGCCTTTGAACCCACGTTTTTTTTATGCGTCATAATTAAGGGCAAATTTTATGTAAGAGAACGTTCAAATAAGGCCAAGTGTTCGATTTCTAGCATTCTAGCTCAGTGTGTCACTTTAGCACATTCCAGTCTATAACAGATCCCTCCAGATGTTGAACTATTCCCGAGGGATGTATATTAGATGTTTAGAGGGTTGGGAACTATTGCTTCTGTGTCTTACGAAACGTAATGCCACTTCAAGTGCTTCATTAGTTCCTGTGACTCTAGCTGCTCGTTGCTCTGGTGGTTAATGTACTGTACGTCAGAACTTTTCTTcatcctttttgttttcttcgtCAAGAGaatattaaatgtacaatttggttttgatgaatttagagggggaaaaaaaaaatgtcgaATGCAAGGAAATGTTCAATAAACGAATGAAGGCTATGAAGTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58194 lncRNA downstream 75066 24521562 ~ 24522021 (-) True G39298
TU58192 lncRNA downstream 76700 24519667 ~ 24520387 (-) True G39296
TU58148 lncRNA downstream 106295 24414900 ~ 24490792 (-) True G39274
XR_006250987.1 lncRNA upstream 9816 24623559 ~ 24624878 (-) True LOC122345299
TU58207 lncRNA upstream 10110 24623853 ~ 24624852 (-) False LOC122345299
TU58247 lncRNA upstream 116469 24730212 ~ 24730391 (-) True G39337
TU58251 lncRNA upstream 117896 24731639 ~ 24732075 (-) True G39341
TU58240 lncRNA upstream 132929 24746672 ~ 24748576 (-) True naa38
XM_043239193.1 mRNA downstream 2971 24587724 ~ 24594116 (-) True anapc2
XM_043238812.1 mRNA downstream 11952 24546148 ~ 24585135 (-) True npr2
XM_043240303.1 mRNA downstream 66124 24530408 ~ 24530963 (-) True pmchl
XM_043239350.1 mRNA downstream 187574 24406995 ~ 24409513 (-) True cd180
XM_043239343.1 mRNA downstream 279256 24298530 ~ 24317831 (-) True LOC122345313
XM_043239298.1 mRNA upstream 1615 24615358 ~ 24616916 (-) False tmem203
XM_043239297.1 mRNA upstream 1615 24615358 ~ 24616844 (-) True tmem203
XM_043239291.1 mRNA upstream 19559 24633302 ~ 24652541 (-) False traf2b
XM_043239290.1 mRNA upstream 19559 24633302 ~ 24652180 (-) False traf2b
XM_043239289.1 mRNA upstream 19559 24633302 ~ 24649136 (-) False traf2b
XR_006250980.1 other downstream 2971 24588028 ~ 24594116 (-) False anapc2
TU57904 other downstream 396591 24197705 ~ 24200496 (-) True G39113
TU57720 other downstream 709407 23887303 ~ 23887680 (-) True G38973
TU57636 other downstream 840499 23751880 ~ 23756588 (-) True G38917
TU57575 other downstream 992354 23602244 ~ 23604733 (-) False LOC122345364
unassigned_transcript_960 other upstream 304077 24917820 ~ 24917893 (-) True trnan-guu_1
unassigned_transcript_961 other upstream 304262 24918005 ~ 24918076 (-) True trnak-cuu_4
unassigned_transcript_962 other upstream 310405 24924148 ~ 24924220 (-) True trnak-cuu_5
unassigned_transcript_963 other upstream 313237 24926980 ~ 24927051 (-) True trnak-cuu_6
unassigned_transcript_964 other upstream 319163 24932906 ~ 24932978 (-) True trnak-cuu_7

Expression Profile