RNA id: XM_043239204.1


Basic Information

Item Value
RNA id XM_043239204.1
length 454
RNA type mRNA
GC content 0.48
exon number 1
gene id zgc:153409
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 9565479 ~ 9565932 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGAGCCTTCCCAGTTTGGTTCTATTCGCGTGTCAGAGTTTTCCGTTCGCTATCATGTCTGGTCGAGGAAAAGGCGGGAAGGGGCTTGGGAAAGGTGGCGCAAAGCGTCACCGCAAAGTTTTGAGAGATAACATCCAAGGAATCACGAAGCCTGCTATTCGTCGTTTAGCGCGTCGTGGTGGCGTCAAGCGTATTTCTGGCCTGATCTATGAAGAGACGCGAGGTGTACTAAAAGTGTTTCTTGAAAACGTTATTCGTGACGCCGTGACCTACACCGAGCACGCCAAGCGCAAGACTGTGACCGCTATGGACGTAGTTTACGCTCTGAAGCGTCAAGGCCGCACGCTGTATGGTTTTGGCGGTTAAATTTCACCCGGaccagattttcaaaaaacaaaggctcttttaagagccGCCCAAACGTtcaattaaaagagaaaattaatgtttattaa

Function

GO:

id name namespace
GO:0001503 ossification biological_process
GO:0048015 phosphatidylinositol-mediated signaling biological_process
GO:0034080 CENP-A containing nucleosome assembly biological_process
GO:0045653 negative regulation of megakaryocyte differentiation biological_process
GO:0000723 telomere maintenance biological_process
GO:0000786 nucleosome cellular_component
GO:0005576 extracellular region cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0005730 nucleolus cellular_component
GO:0003677 DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K11254 H4; histone H4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51125 lncRNA downstream 317438 9246920 ~ 9248041 (-) True G34704
TU50983 lncRNA downstream 504665 9013306 ~ 9060814 (-) True G34594
TU50996 lncRNA downstream 574166 8991101 ~ 8991313 (-) True G34607
TU50995 lncRNA downstream 574456 8988611 ~ 8991023 (-) True G34606
TU50967 lncRNA downstream 631340 8933911 ~ 8934139 (-) True G34583
TU51339 lncRNA upstream 198141 9764073 ~ 9764532 (-) True G34869
TU51341 lncRNA upstream 200336 9766268 ~ 9766607 (-) True G34871
TU51347 lncRNA upstream 211701 9777633 ~ 9778238 (-) True G34877
TU51619 lncRNA upstream 715477 10281409 ~ 10296141 (-) True G35035
TU51637 lncRNA upstream 771815 10337747 ~ 10341167 (-) True G35047
XM_043239202.1 mRNA downstream 2183 9561925 ~ 9563296 (-) True LOC122345251
XM_043239198.1 mRNA downstream 7108 9535533 ~ 9558371 (-) False loxl2b
XM_043239197.1 mRNA downstream 7108 9535533 ~ 9558371 (-) True loxl2b
XM_043240462.1 mRNA downstream 46966 9508637 ~ 9518513 (-) True sfrp1a
XM_043238276.1 mRNA downstream 70829 9430925 ~ 9494650 (-) True zmat4a
XM_043239201.1 mRNA upstream 583 9566515 ~ 9569294 (-) False LOC122345250
XM_043239200.1 mRNA upstream 583 9566515 ~ 9569294 (-) True LOC122345250
XM_043239838.1 mRNA upstream 5270 9571202 ~ 9575807 (-) True hdr
XM_043239839.1 mRNA upstream 5270 9571202 ~ 9575805 (-) False hdr
XM_043239837.1 mRNA upstream 13556 9579488 ~ 9681801 (-) True unc5db
TU51236 other downstream 162856 9337828 ~ 9402623 (-) True G34789
TU51091 other downstream 344972 9215508 ~ 9220507 (-) False vamp5
TU50964 other downstream 635426 8929470 ~ 8930053 (-) True G34580
TU50888 other downstream 887761 8674549 ~ 8677718 (-) False LOC122345093
TU50638 other downstream 1133904 8429700 ~ 8431575 (-) True timm8b
XR_006251099.1 other upstream 759183 10325115 ~ 10335342 (-) False si:dkey-96l17.6
TU51745 other upstream 895276 10461208 ~ 10461709 (-) True G35122
TU52098 other upstream 1302432 10868364 ~ 10874064 (-) True G35371
TU52116 other upstream 1357995 10923927 ~ 10926163 (-) True G35384
TU52323 other upstream 1854023 11419955 ~ 11467122 (-) False hmgn7

Expression Profile