RNA id: XM_043239225.1


Basic Information

Item Value
RNA id XM_043239225.1
length 4333
RNA type mRNA
GC content 0.47
exon number 23
gene id ap1b1
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 10647593 ~ 10672570 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCATGTAAAGTGGGAGGGAAGGAAGAAGGCCGACTTGTACACACTCATACTTCACTTCGgAGAACCGCGGCTTGGGATCCAAGATGACAGACTCCAAATATTTCACCACTACCAAGAAAGGGGAGATCTTTGAGCTGAAGGCAGAGCTCAACAGTGataagaaagagaagaagaaggaaGCAGTGAAGAAGGTCATTGCATCTATGACCGTGGGAAAAGATGTCAGTGCTCTGTTTCCTGATGTTGTGAACTGCATGCAGACGGATAATCTGGAGCTCAAGAAGCTGGTCTATCTGTATCTGATGAATTATGCCAAGAGCCAGCCGGACATGGCCATTATGGCCGTCAACACCTTTGTGAAGGACTGTGAGGACCCAAACCCTCTGATCCGCGCACTGGCTGTGCGCACCATGGGCTGCATCCGAGTAGATAAGATCACTGAGTATCTGTGTGAACCTCTAAGGAAGTGTCTAAAAGATGAAGACCCTTATGTAAGGAAGACTGCTGCTGTTTGTGTTGCCAAGCTACATGACATTAACGCCCAGCTGGTGGAAGACCAGGGCTTCCTGGACACCCTGAAAGACCTGATCTCTGACTCCAACCCCATGGTGGTGGCAAATGCAGTAGCGGCTCTGTCCGAGATAGCAGAGTCTCATCCTAACAGCAACCTTCTGGACCTGAACCCTCAGACAATTAATAAGCTCCTGACAGCTCTTAATGAGTGCACTGAGTGGGGCCAGATCTTCATCCTCGACTGCCTGGCCAACTACACACCCCGTGATGACCGCGAGTCACAGAGTATCTGTGAGCGTGTAACTCCACGGCTGTCCCACGCTAACTCTGCCGTGGTTCTGTCTGCTGTGAAGGTTCTGATGAAGTTCATGGAAATGCTTCCTAAAGATCTAGACTATTATGGCACTCTACTGAAGAAACTTGCTCCTCCTTTGGTCACGCTGCTCTCAGCTGAACCTGAACTGCAGTATGTTGCCCTGAGGAACATTAATCTCATCGTACAGAAACGCCCCGAGATTCTAAAGCATGAGATGAAGGTTTtctttgtgaaatataatgacCCAATCTATGTCAAGCTGGAGAAGCTGGATATCATGATCCGCCTGGCGTCTCAGGCCAACATTGCTCAggTGCTGGCTGAGCTGAAGGAATATGCCACTGAAGTGGATGTGGACTTTGTGCGTAAAGCTGTACGAGCCATTGGCCGCTGCGCAATTAAAGTGGAGCAATCAGCAGAGCGTTGTGTCAGCACACTGCTTGACCTTATTCAGACCAAGGTCAATTATGTGGTGCAGGAAGCCATTGTGGTCATCAAGGACATCTTTCGCAAGTACCCCAACAAGTATGAGAGTGTGATTGCCACTCTTTGTGAGAATCTGGACTCTCTGGATGAGCCTGAGGCACGGGCAGCCATGATCTGGATTGTGGGAGAGTACGCAGAGAGGATCGACAATGCAGACGAGCTGCTGGAGAGCTTCCTGGAAGGCTTCCATGATGAGAGCACACAGGTGCAACTGCAGTTGCTGACAGCTATTGTGAAGTTGTTCCTGAAGAAACCCACGGAGACCCAGGAGCTGGTGCAACAAGTGCTCAGTCTCGCCACACAGGATTCTGATAATCCTGACCTGCGTGACCGTGGCTACATCTACTGGCGTCTGCTCTCCACTGACCCTGTGGCGGCGAAAGAGGTGGTGCTGGCCGAGAAGCCTCTGATATCAGAGGAGACGGACCTGATTGAGCCCACCCTGTTGGAGGAGCTTATCTGCCACATTGGTACTCTGGCCTCAGTCTACCACAAACCTCCCAGTGCTTTTGTGGAGGGCAGCCGTGGTGTTCAGCACAAGAGACTTCCTGCTCGTGCTGGATCtgggGAAAGTGCCGAGAGCCCTGATGTTGGCCAGTCCGGACCTTCTGAAGCTCCACCTGCTGTCATTCCATCACAAGGTGATCTCCTTGGTGACCTGCTGAATCTGGATCTGGCCCCACCCGCTGCCACGGTCCCTTCTGTGCAGCCCTCAATGCAGATGGGAGCCATGGACCTACTTGGAGGAGGTCTGGATAGTCTGCTGGGAGGAGACATCGGCCGAAGCCCTTCGATGGGTGCCGGTTTGGGGGCGGCCCCAGCAGCCATGCCTGCTGCTCTCGGCGGTGCTCCTGCTGTTGGAGGTGGATTGGGTGACCTTTTTGACCTCGGTGGAGGTGTTGGCATGCCAACAGGATTCTACGTTGCTCCTAAAACTGTGTGGTTACCAGCAATGAAAGCTAAAGGGCTGGAGATTTCTGGGACATTTGCCCGACGTGGTGGGATCATTCAGATGGATATCTCTCTTACCAACAAAGCCATGAGCGTTATGACTGACTTCGCCATTCAGTTCAACAGGAACAGTTTCGGTCTCGCCCCTGCTGGCCCTCTGCAGGTTCTGACTCCTCTGAGCCCCAATCAGACCATTGACGTTAGTCTCCCTCTTAGCACCACCGGCCCTGTCATGAAAATGGAACCCCTCAACAATCTGCAGGTAGCTGTGAAGAATAACATCGACGTGTTCTACTTCAGCTGCCAATATCCTCTCAGCCTGCTCTTTGTAGAGGACGGAAAGATggAACGTCAGGTGTTCCTGGCCACCTGGAAGGACATTCCAAATGACAACGAGGCACAGTTTCAAATCAAAGACGTCCACCTCAACTCAGACGCGGCCAGCAACAAGCTGCAAGGCAGTAATATCTTCACCATAGCCAAGAGAACAGTGGAGGGACAGGACATGCTGTACCAGTCTGTAAAACTCACCAACGGCATTTGGGTGCTGGCTGAAATGCGCATACAGACCGGAAACCCCAACTACACGGAAATGGAgCTGTCGATAAAGTGCAGAGCGTCAGAGGTGTGTCAGTTTGTGTACCAGTGCTATGAGTTGGTGCTGAAGAACTGAAGAGGGGGAATACAACAGGAAACAGCAGTTCCCAGGCATCGTTTGGGTGACTGAAACTTGATTGGACCAGTCAAAGAACCCCTGCTGTCTAGCATTTCCTTCAGACTGCGCTTTCAGCATCAACTGAATACCAATTTCTCTTCCATTATTTTGTCCATTCCCAACACCCTTCTATATCCAATCCTGCAGTCCTTAAAATATTACACTTACAGTAAAACAAAcgacacacaaaatataaagacaTCATCTTTATTTCCTATGTGCAGGTGTTCTGATTAGAAAATTTCATTCTGTACTCAACCATTGCGTCACTGTTTATTTGGCGTGGTTTTTCCTTCTCGTGGAAGTCGAGCATCGTACACAACCTGTTTTCATCATCCATCCAGTTGTAGGAAAGGTGTTTACTGCAGTTGAGAGGAACCTTTCaacactgctgtttttaatttagtcttaATTATCAGACAATTGGGTCGCTGGGCTTGTATTCACACAAACAGTTcaagtctttatttattttttgttctgttttattaaagctCTCCATGATCTTTCCTCAGAAATGTAGGTGTCCCACAATTTCTTTTAAGGGAATGCTGTGTTCATCCAGAAGCACTACACAATTGCtgagtaaacttttttttttttttttttttttttttttcgtcttcaAATTATCTCTGCATTTGGTGAAGTTTGCAGTCATGTTTTTCTATTAAGCTGGGTTTGTTTTAGTTACTACTGTCttttgtgtgctgtgtgtgtgtgagtgcgtgtgtgtttgtgtgagagttGCGCGAGTTGGAGATGTAACATGCTGCATGTTCTGTTCCTCCTCCTGGCAATATTCTCTGTCCTCCTTTATTCCCCAGAAGGactatacatttttgtgtgtgtgtgtgagactccTAAGATCATCTTACAGAAAATGACACCCTTTATGGTATGAATATCTCTCGAATCACACTGAACGCGATGCACCTGAAGTCTCCTGCTTTGCGAAACAAACCTGTTCACTGAAGATGCTTCTTCTTTTCAGGACGGGGAAATGTGGTTAATCCTTTTATGTGTCCATGTGatgtttaattcttttaaaCAATGTTGACAAGGTGGACAGACCTCTATCAAGCTTAACGTAAAAATACCACCAGACAAAACAATGCTGACGTGGCATGCACATGTCCTGTGTGTACACTTAGAAGTTCCCAAATAATATTGattactgtttttcttttaatcataGTTTGTTGATTCTGTATATGTTTGTTAATTCTTTATGGTTTAGTCATAGGGGTGACTACAAGGAGATGTGCAGCAAAGAAATTTGCTTTACTTTTTGTTGGATTCTGTCATGAATGCATCTgttatagaaattaaaaaagtatattacccattga

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006897 endocytosis biological_process
GO:0035315 hair cell differentiation biological_process
GO:0048839 inner ear development biological_process
GO:0050974 detection of mechanical stimulus involved in sensory perception biological_process
GO:0048884 neuromast development biological_process
GO:2000649 regulation of sodium ion transmembrane transporter activity biological_process
GO:0030131 clathrin adaptor complex cellular_component
GO:0008565 obsolete protein transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51689 lncRNA upstream 99990 10547221 ~ 10547625 (+) True G35081
TU51632 lncRNA upstream 313807 10333219 ~ 10333808 (+) True G35043
TU51631 lncRNA upstream 317293 10329889 ~ 10330322 (+) True G35042
TU51630 lncRNA upstream 320154 10327031 ~ 10327461 (+) True G35041
TU51629 lncRNA upstream 320901 10325866 ~ 10326714 (+) True G35040
TU51833 lncRNA downstream 140887 10813457 ~ 10816301 (+) True G35197
TU51838 lncRNA downstream 165442 10838012 ~ 10838367 (+) True G35202
TU51871 lncRNA downstream 272486 10945056 ~ 11019192 (+) True G35229
TU51912 lncRNA downstream 464482 11137052 ~ 11147242 (+) False LOC122346180
TU51914 lncRNA downstream 464482 11137052 ~ 11147242 (+) True LOC122346180
XM_043239677.1 mRNA upstream 472 10621657 ~ 10647143 (+) True gas2l1
XM_043239678.1 mRNA upstream 27723 10611574 ~ 10619892 (+) True ewsr1b
XM_043239679.1 mRNA upstream 38748 10552976 ~ 10608867 (+) True emid1
XM_043239681.1 mRNA upstream 38748 10552976 ~ 10608867 (+) False emid1
XM_043239684.1 mRNA upstream 40055 10552975 ~ 10607560 (+) False emid1
XM_043238395.1 mRNA downstream 1409 10673979 ~ 10687038 (+) True rasl10a
XM_043240586.1 mRNA downstream 18209 10690779 ~ 10701390 (+) True LOC122345984
XM_043240585.1 mRNA downstream 18322 10690892 ~ 10701390 (+) False LOC122345984
XM_043240587.1 mRNA downstream 18322 10690892 ~ 10701321 (+) False LOC122345984
XM_043238157.1 mRNA downstream 44961 10717531 ~ 10736059 (+) True osbp2b
TU51450 other upstream 529489 10064217 ~ 10118126 (+) True fam219ab
TU51316 other upstream 848257 9796390 ~ 9799358 (+) True si:ch211-102c2.4
TU50789 other upstream 1776097 8867513 ~ 8871518 (+) False man1b1b
XR_006251032.1 other upstream 2343464 8289720 ~ 8304151 (+) False snx19a
XR_006250944.1 other upstream 2637016 8001578 ~ 8010599 (+) False spns3
TU51709 other downstream 56548 10729118 ~ 10731052 (+) False osbp2b
XR_006251113.1 other downstream 254253 10926823 ~ 10933163 (+) False senp3a
XR_006251083.1 other downstream 373910 11046480 ~ 11062314 (+) False map7d2a
XR_006251021.1 other downstream 1251658 11924228 ~ 11942072 (+) False smarca1
TU52593 other downstream 1576568 12249138 ~ 12255672 (+) True G35720

Expression Profile