RNA id: XM_043239237.1


Basic Information

Item Value
RNA id XM_043239237.1
length 2697
RNA type mRNA
GC content 0.45
exon number 8
gene id LOC122345264
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 21296259 ~ 21311401 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCAGATGTTGAGAGGAGCGCAGGAGAGAGCAGCAGTAGAGAGATGCAGGCAGAGGAGAGAGTTACTTTAACATCCACTGAAGGATCTACAGACCTTTAGAAAAGACAAGCATGGCAACGTTTACTTTTCTTCCAGAAATGAGCCCTTTGTTTCACAGGGTTCATTTCTTCTGATTTTTAATCGCGACACTAACGGTGCAGAATTGTGTCTCGTGaaagttttcttttctgaaaacgCATTTTGAATCGGTTTGCTGTGAAGAATTTGGAAGAGTTTGGTTTTCTGTTTGGGAATCGTTTTAGTGGTGTTCCGGGGGTCAGTGCCCCTTCTCTTTCCTGCTGCGTGGCTGCGAGAGGAACACAGTCAGGATGACAGAGATCGTGGTGACGGACTGTAATCTGAACTCGGTGTGTGAGCGCGTGGAGCAGCACTGCTGCGTGGACGATCCTTCAGCCATCAAAAGACACACCAACACCGGTGCCAAACTGTGGGGCCGTGTGCGAAGTAAACTGCTCCGACAAAAGCTGGACCCACAGACCGTGCAGTCCAAAAACTGGCATATGGATGTCATAGAAATGAATGGGATTAAAGTGGAGTTTTCCATGAAGTTTACCAGTCGGGACTTAAGTTTAAAGCGGACGCCTTCTAAGAAACAGAGCGGCGTGTTTGGGGTTAAAATCAGCGTGGTAACAAAGCGCGAGCGCTCCAAGGTGCCTTACATTGTGCGGCAGTGCATTGAGGAGGTGGAGAAGAGAGGGATTGATGAAGTGGGCATTTACAGGATCTCCGGAGTGGccacagacatccaggccctcaAAGCAGCGTTTGACGCCAaTACCAAAGATATCCTGGTGATGTTGAGTGACATGGACATTAACGCCATCGCGGGGACactgaaattatatttcaggGAGCTGCCAGAACCTCTTCTCACAGACCGGCTGTATCCGGCCTTCATGGAGGGCACTGCTCTATCAGATCCTGCAGCAAAGGAGAACTGCATGATGCATCTGCTGCGGTCACTACCAGACCCCAATCTCATCACCTTCCTCACCCTACTGGAACACCTCAAGAGGGTGGCAGAGAAGGAGCCGGTCAATAAGATGTCTCTGCATAATTTGGCCACAGTGTTCGGCCCCACTCTGCTGAGACCGTCAGAGTCAGAGAGCAGCAAGGCCCACATCACGCTGGCCTCTGATATCTGGTCACATGATGTCATGGCACAGgtTCAGGTATTGCTGTACTATCTGCAGCATCCGCCCATATCCTTCGCTGAGCTGAAGAAGAACACACTCTATTTCTCAACTGACGTCTAACTCCAACAAATGACTCCTTTCCTCTCAAACatcgtctttttttttgtgtacaaagCCAACGGTCCGGCGGGGGGGACAGCGAGTGACTGTGGCCACTCTCCCCTGCGTTTGTCGTCTCCGGTCATGTTCATGTGTAAAAGGAGCTCGCGCTTCGCTTCAGCGCGGAGAAGAGCTGCAGCCAGAGGAAGACCAAGATACAGCATCACCTTATACAGACGCTGCACTtctcacacccacacacacgtcctgccaaacacacacacacacgtcaaacACCGTCCCGTCCGAAGGTTTGTCGGTTGGAGTTGCAGATGCATGCTGGGATGTCTGCATCCGTTGTGGCGTCTCCTCTAAAGCCCAGTTCAGTGATCCCGCAGCTGAAGCTCTCTCCCCGAAGAGACATTCCAGTAAACATCAgcatttacatgttttagacattatttgttcattttagtttcaaaagCTTTTGTGCATGTGATAACAAGGACagtgagctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagtaaacgcaattgtttaaaatgcatatctCATGCTGCGAGTGTTTTCTTCTgggcaaaacattaaaatcccAGACCTTCCTTGTCCAAGTACATCCAGGCCAAAAATCGCCCTATTTATTCTGAATATATACTGTTAATTGTGCCTGTACAGTTCAGTACACTCTGAGACTCCGTGGAGTCCTGCATTCGCATTTCTGGTCTAttttttttgattagttttaACTTCCTGTCAGTATAGACTTGAATATCATACTGTAGACGAGAGAAACTAACAGTTCAACCAGCCAGCTTTCGGGACAAGAGCTGGTGTGCGGTGTAGTCAGATTGTGGAAAAACCCGGAGAAATGCAAAACTGTCTTGAGTTGGAGAAAAAAGCTCTCCTGTCATCTTTGTAAGTTGAAGTGTCTGGTGATACTTCAGTTTGTTCTGTAGAAAGATTGTTGTTATTTGcccttttttttgcatgttcgGCTTGTCAGATAAAAAGTGGCAGGATAACACAAaagttcattttcttctttgtattttgattttatttaatgactattattattattattattattattattattatttttactccTCTGCTGAAGACCACTGGCAGAGCGGAGggaaaaatgaaacttttctGCTACAAAGCCAGTGACATGTACTTCATAAGCACTGTTAGATTGCAAactatttgatattttaatataaaaggaaattaaaagctggtgtattttatttctgttgatGGAAAGATATTGAGTATACTGTATTAACAAGGGTAAATGTTGATGTGACCTTTTTTCCCCCcgtttttagtaaaataaataaaagtgtacaTTGAGCACGGcaa

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component

KEGG:

id description
K20643 RGD1; Rho GTPase-activating protein RGD1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU56700 lncRNA downstream 144416 21149938 ~ 21151843 (-) True G38334
TU56699 lncRNA downstream 144416 21150208 ~ 21151843 (-) False G38334
TU56694 lncRNA downstream 172617 21122793 ~ 21123642 (-) True G38330
TU56693 lncRNA downstream 174847 21121116 ~ 21121412 (-) True G38329
TU56538 lncRNA downstream 249615 21044165 ~ 21046644 (-) True G38254
XR_006251054.1 lncRNA upstream 49610 21361011 ~ 21362123 (-) True LOC122345899
TU56726 lncRNA upstream 99584 21410985 ~ 21414269 (-) True G38347
TU56961 lncRNA upstream 384927 21696328 ~ 21697193 (-) True G38507
TU56970 lncRNA upstream 510075 21821476 ~ 21829707 (-) False G38510
TU56971 lncRNA upstream 510075 21821476 ~ 21829707 (-) False G38510
XM_043239238.1 mRNA downstream 687 21294121 ~ 21295572 (-) True nanos2
XM_043239134.1 mRNA downstream 2450 21263648 ~ 21293809 (-) True zswim7
XM_043239135.1 mRNA downstream 2450 21274690 ~ 21293809 (-) False zswim7
XM_043239133.1 mRNA downstream 116278 21177382 ~ 21179981 (-) True LOC122345218
XM_043239215.1 mRNA downstream 211438 21080940 ~ 21084821 (-) False ttf1.6
XM_043240482.1 mRNA upstream 112969 21424370 ~ 21672896 (-) True LOC122345940
XM_043240487.1 mRNA upstream 112969 21424370 ~ 21490190 (-) False LOC122345940
XM_043240483.1 mRNA upstream 112969 21424370 ~ 21477957 (-) False LOC122345940
XM_043240484.1 mRNA upstream 112969 21424370 ~ 21474079 (-) False LOC122345940
XM_043240485.1 mRNA upstream 112969 21424370 ~ 21468577 (-) False LOC122345940
TU56460 other downstream 360166 20929150 ~ 20936093 (-) False LOC122345723
TU56325 other downstream 1168869 20125589 ~ 20127390 (-) True G38140
TU56161 other downstream 1240461 20051659 ~ 20055798 (-) True G38058
XR_006251077.1 other downstream 1360683 19867386 ~ 19935576 (-) False kcnt1b
TU56747 other upstream 52837 21364238 ~ 21369048 (-) True G38359
TU56743 other upstream 301287 21612688 ~ 21619583 (-) True G38355
XR_006251046.1 other upstream 497612 21809013 ~ 21826105 (-) False akap10
XR_006250934.1 other upstream 566755 21878156 ~ 21884022 (-) False LOC122344823
XR_006250933.1 other upstream 566755 21878156 ~ 21884022 (-) False LOC122344823

Expression Profile