RNA id: XM_043239240.1


Basic Information

Item Value
RNA id XM_043239240.1
length 3705
RNA type mRNA
GC content 0.44
exon number 19
gene id erap2
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 19314148 ~ 19323539 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAAAATGAGCGCGTTCGTCAATAATGTTGTTAGTTGATGCTTGTCCTACTTTGAAGAGACCACATCATCGcgacacacagacacgcacgcacacgcgcgcgcgcgccagAATAGAGCTGAAGAGCTCGTGCTGTATCACGGCAGATGTCAATGTATTACCGTGAACGGGCTCACGTTACAGAGCGAGGTCAACCGAGAACGCCCAGCTTGGCTCTGCGTTGCCGTGCGTGTTATTTTAAGAACACTTGAttgttgtcttttattttaattagcattcGGATCATTCTGACATGTGCTAGATTCTAGGGTGCATCTCGAACGATGAATGAGCGGGAAATGCACGAATGAAATGACACAGTGACAATTTCTAAAAAGCAAAAGTGATCACCATCAAAACCAGCAATACTAAAAACCTTCATTATGCGACTCTTGCTTGTAatcctgctctttctggagTCACAGCTTTGTGTCCAGTCTTCTGATAGCAGTAGTTCTGCTGGCGATAACCTGGCGACAAACGGCCTTCCTTTTCCATGGAGTAAAGTGCGCCTGCCAAACTACATAGTGCCTGTACATTACCATCTACTTATTCATCCCAACCTCACCACCCTGAGGTTCAACGGTTCTGTGAAGATTGAGATCGAcgtcaaaaacaacacaaactggGTGGTGCTGCACAGCAAGAACCTGAAGATCTTCACCGCCACTGTTCTGAACGAGCACGAGGCCCATCTGTCAGACAAAGTGCTCTCGGTGCTGGAATATCCAGCGCATGAACAGATTGCCATCTTCTGCCCAAAGATTCTGACCTCTGGGGAAAAATACTTCCTGTATTTGGAATTTGGAGCACCGTTAAGTGATGGCTTCTATGGATTTTATAAGAGCACGTATAGAACAAAAGCCGGGGAGATGAGGGTCCTGGCATCCACCCACTTTGAGCCCACATCTGCCCGAATGGCGCTGCCATGTTTCGATGAGCCCATTTTCAAAACGAATTACACTGTCAGAATAAGGAGGAGCTCATCACACATAGCGTTGTCCAACATGCCTTTAGAACAGACTCTGGAAATCGGCAATGGTGTGTTTGAGGACCAGTTTGAAGTGAGTGTGAAGATGAGTTCGTACCTGCTGGCCTTCATCGTCTGTGACTTCACGTCTGTCAGTGGGATGACTGCAACCGGAATTAATATTTCTATTTATGCAGTTCCAGAGAAATGGCATCAGACACACTATGCCCTCGAGGCTGCTTTGAGGCTTTTGGAGTTTTATGAACAATATTTCAACATACTTTATCCTCTGCCAAAAATGGACTTGATAGCGATTCCAGATTTCCAGTCAGGAGCTATGGAGAACTGGGGTTTGACTACTTATAGGGAGACATCTCTTCTGTATGACCCTGACATCTCGTCGGCCTCTGATAAGCTCTGGGTTACCCTGGTGATTGGACACGAGCTGGCCCATCagTGGTTTGGTAACCTGGTGACCATGGAGTGGTGGAATGACATTTGGCTGAATGAAGGTTTTGCCCGATATATGGAATTTGTTTCGCTTGAGGCAGTATATCCGCAGCTTAAAGTCGAGGACCACTTCCTGGACACCTGTTTCGGAGCTATTGGACGGGATTCTCTAAATTCTTCCAGGCCAATTTCCAGTTTGGCTGAGAACCCTACTCAGATAAAGGAAATGTTCGATACAGTGTCATATGATAAGGGAGCATGTATTCTCCATATGCTGAGGAATTTCCTGACAAACGAAGGTTTTCAGAGTGGCATAATTCGGTACCTTCGGAGGTTTAGGTACAGCAATGCCAGAAATGAAGACCTGTGGGACAGCCTTATTAAAACGTGTTCTGAGGAGGATTTTACAGCAGGAGAACACTGTTACAGCAGTACCCAAGCCACTAAAAATGCGTATCGTTTTGCCGGGGAGCATATAGACCTGAAGGAAATGATGTATACGTGGACTCTACAAAAGGGCATACCGCTGGTCACAGTCAGGCGACAAGGAAGGAAACTTTATGTTGGGCAGGAGCGCTTCTTAAAGATAGTCCTGCCCAATGATCCCACGTGGAATTCATTTCAAGAAGGCTACCTGTGGCACATCCCTTTGACATACAAAACAAGCCACTCTGAACATGAGATGAAGCACGTACTGACCACAAAATCAGATGTGTTGACGCTGGATGAGGAAGTTGACTGGGTGAAGCTCAACACTGACATGAATGGATATTATATTGTCCATTATGATGAGGAGGGCTGGAACGCTCTGACCGAGCTGCTGAGAGTAAACCACATGGCTCTGAGCTTCAAGGACAGAGCCAGCCTCATTCACAACGCCTTCCAGCTGGTCACTGCAGGACGGCTGTCGCTAGACAAAGCTTTGGATTTGATCGCTTACTTGAGGTCTGAGACCCACAATGTTCCTCTCTTGCAAGGGCTTGGCTATCTGCAGTCATTCTACAAGCTGATAGAGAAGAGACACATAGCCGACGTTACTCATAATCTGAAGACCTACATTTTGCAGTATTTCGGAGATGTGATTGACAAGCAGACGTGGAGCGATGATGGGACGGTCTCAGACCGCAGACTGCGTGAAGAGGTTCTTTCCCTTGCATGTGATTTCAATTATCCACCTTGTATGGAAAAAGCTAAGCAGCTCTATGATAGTTGGGTGGAATCCAATGGTACAATCAGcttACCCACTGATGTGTCTGAGACGGTTTACATGGTTGGAGCCCAGGATGACAACGGTTGGGCCTACCTTCTGGAAAAGTATGGTGTGTCCATGTGTGAGACAGAGAAGGGCAAATTTCTCTCAGCTTTAACAAGCAGCAAGGACTCTGAAAAACTATTAAGATTATTACAGCTTGGGATGGGTGgaactgtaataaaaacacagaatttacCCAGTCTCATATACATGGTGGCCAGAAATCCAGTCGGCCATTTTCTAGCATGGGATTTTGTGAAGAAACATTGGAATGAACTGGTAGAAAAGTTTCCACTGGGATCTTTTGGAATCAGAAATATAATCGTAGGCACTGTAACTCAGTTCTCATCCACTGAGGAGTTGAGAGAGGTTGAGGATTTCTTCAAGTCCATCACAGAGCAGGTATCTCAGCTGCGTGTCATACAGGTGGCCACAGAAAACGTGGAGAAGAACATTTTGTGGCTCGCGAGGAATCTAGAGACCATGAGGAGTTGGTTGCAGCAAAGgctcatataaaatgtaaaaagaagaccaacattttacattatattagtttttactaGTATAATGATTTAAGTAACAGCATCAGGATCAACTCAGAAACCCCACTTTACAAGTTTTCtactgttttgcattttttagaTAGTGTAATGGCACATATAATGCATGATGTGCTTGCTTTTTTTGGTTTACTTAGATAAAGAGGTTCTCTAATGATTTTGTCTTGGTGTTTTTCTGTGCTTCTGATTGGTCTCTTGACAGCTGTGCCACattttttaactaatgttaagaGGACACTGCCTGTTAATTAGTGGCACAAAATCAGACTCGAAGACGCTGAACATTAATGAGCCGAGGAGGgtttggaataaaaataaatatgttttttttttttaataagggtTGACGAAAATGTGTTCTAATGAAACATGACAAACAcagaaattgttttaaaataaagtatgaaaataaatgtaaacttttgtttaaaaaaaa

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0008237 metallopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55752 lncRNA downstream 27300 19286627 ~ 19286848 (-) True G37801
TU55751 lncRNA downstream 31457 19282377 ~ 19282691 (-) True G37800
TU55750 lncRNA downstream 32056 19281865 ~ 19282092 (-) True G37799
TU55741 lncRNA downstream 88719 19224352 ~ 19225429 (-) True G37792
TU55738 lncRNA downstream 136264 19175463 ~ 19177884 (-) False mtx3
TU55882 lncRNA upstream 182911 19505921 ~ 19510282 (-) True G37877
TU55941 lncRNA upstream 379059 19702069 ~ 19702343 (-) True G37926
TU55943 lncRNA upstream 380410 19703420 ~ 19703685 (-) True G37928
TU56076 lncRNA upstream 633418 19956428 ~ 19956662 (-) True G38019
TU56164 lncRNA upstream 730340 20053350 ~ 20055798 (-) False G38058
XM_043239112.1 mRNA downstream 1003 19297299 ~ 19313145 (-) False LOC122345207
XM_043239111.1 mRNA downstream 1004 19297299 ~ 19313144 (-) False LOC122345207
XM_043239113.1 mRNA downstream 1617 19297299 ~ 19312531 (-) True LOC122345207
XM_043238313.1 mRNA downstream 92982 19217735 ~ 19221166 (-) True cdk7
XM_043240053.1 mRNA downstream 97409 19196018 ~ 19216739 (-) True serinc5
XM_043239241.1 mRNA upstream 5142 19328152 ~ 19340602 (-) True rgmb
XM_043238495.1 mRNA upstream 96872 19419882 ~ 19424139 (-) False si:ch211-117c19.1
XM_043238494.1 mRNA upstream 96872 19419882 ~ 19424139 (-) True si:ch211-117c19.1
XM_043239634.1 mRNA upstream 101188 19424198 ~ 19441113 (-) True mamdc2a
XM_043239635.1 mRNA upstream 102705 19425715 ~ 19441113 (-) False mamdc2a
TU54999 other downstream 2600981 16687260 ~ 16713167 (-) True G37277
TU54996 other downstream 2600981 16687415 ~ 16713167 (-) False G37277
TU54976 other downstream 2681027 16596855 ~ 16633121 (-) True G37258
TU54936 other downstream 2935653 16376508 ~ 16378495 (-) False LOC122344728
TU54865 other downstream 3057409 16254149 ~ 16256739 (-) False LOC122344710
XR_006251078.1 other upstream 544376 19867386 ~ 19935576 (-) False kcnt1b
XR_006251077.1 other upstream 544376 19867386 ~ 19935576 (-) False kcnt1b
XR_006251079.1 other upstream 545804 19868814 ~ 19935576 (-) False kcnt1b
TU56161 other upstream 728649 20051659 ~ 20055798 (-) True G38058
TU56325 other upstream 802579 20125589 ~ 20127390 (-) True G38140

Expression Profile