RNA id: XM_043239241.1


Basic Information

Item Value
RNA id XM_043239241.1
length 3671
RNA type mRNA
GC content 0.47
exon number 3
gene id rgmb
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 19328152 ~ 19340602 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TATCGATCATCGGGGAAAGACGGGGCTAGATTTCCTTGTGGCGGAGAAATCTGATGTGCAGGCAACATGAATCGGGCGATCGCGGGGCGCAGATTAATTTTAGCACGTTAACAGAATTCTTTCGGACCGATTGTCTTCACCGAATGCAAATTAAACAGCACTTTTCCACAGTGCTCCGGGAAGAAGTGCTTTGGATCGGACTTGCCAAAAGAACTACTTTTGTTTCTCTTATGGACGCTTTGCGTTACCTAAAAGTAGCCGCGTCTTAAGAGAGTTACGCACCCCTGCCTTGCGTTGCGTCCGGAGAAGCGAGGCCCGATCTCTTGACCCGTGGAGTACTCTCGAGTCTctctggatggatggatgggtatGGGGAGAGCAGGATCTTACTACCCCGGGGCTGAGCGCCTCATCTCTCCGCTACTACATCTACTAGTGCTGTGCACCCTCTCCTCTCTCACCCACATAGGTGAGAGCCAGGTCCAGACTCCGCAGTGCCGTATCCAGAAGTGCACCACTGACTTTGTCTCTCTCACTTCCCATCTTAACCCTTCACTGGATGGCTTTGATACTGAGTTCTGCAAAGCGCTGCGAGCCTATTCCGCCTGCACCCAGCGCACATCCAAGAGCTGCAGGGGAAACCTGGTCTTCCACTCCGCCATGCTGGGCATCAGTGACCTCATGAGCCAGAGGAACTGCTCCAAAGACGGGCCCACGTCGTCTACCCATCCCGTCATCCCCATTGAGCCATGCAACTATCACAGCCGCCATCACCAAGCATCACGGCCCGGAGCAGGGACCGGGGCTCCAGAGCACCCACGACCAACCTATCTGTTCTGTGGCCTGTTTGGGGACCCTCATCTTAGGACTTTCAAAGACCATTTTCAGACCTGTAAGGTTGAAGGGGCATGGCCCCTCATTGATAACAATTACCTGTCAGTGCAGGTCACAAATGTTCCAGTGGTGTACGGATCCAGTGCCACAGCAACCAATAAGATCACGATAATCTTCAAACCATATCAAGAATGCACGGACCAGAAGGTCTACCAGGCCGTAACAGACGACCTTCCGGCCGCTTTTGTGGACGGCACCGTCAGCGGAGGCGATAGCGAGACTCGCAGCATCTGGATACTGGAGAAGGCGCCGGCTAGACACGTAGAGATCCACGCCGCGTACATCGGGGTCACCATCATCGTACGCCAGCAGGGCCGGTACCTGACGCTAGCCGTGCGAATGCCAGAAGAGCTCGCCATGGCCTTCGACGAAACGCAGGACCTGCAGCTTTGCATGAACGGCTGTCCCACGTCAGAACGGATCGACCAAGAGGGACACCTTCAGCTGCCCATGCTGGGCCTCCAGCAAGCCAGCTTTCAGCAGCAGGCGAGGGTCGAAGCCCAGAGAGGCCTCTTCTCCCTCGAAAGCGCCTCCAGGAAGTGCAGGGAGCAACTGGAGATTAAGGACATCTATTTCCACTCCTGCGTGTTTGACCTGCTCACCACAGGAGATGCCAACTTCACCACTGCCGCCTACAATGCCCTGAAGGACATGGAGACTCTGCACCCCAAGAGGGAGCACTGGCGTATTTTTCCTAACTCAGCCAATGAGCTGAGGCCGTTTTCATCGCTCATCGGTGCACTGCTGACCGGCTTCCTCATCACTGTGCTTTTATAATGCGCACAGTGTTTTGATAACTGTTTCGAAGAAGAAAAGCAGACTGTAAAAAGTCGGTACTCTGAGGTACTTTGTATATACAATGTCCGTGCGGAGAGTGAATGTTAGAATGCGAACCTTCGTTAGATTGTACATTTTGTGAAAATCACGTTTTCAAGAGAGCTGAATATTGTAGATTTTTGTGAGTGTGaatttttttgagattttttgggggggggtttgTCCTCAGGAGAGGAAATCTTAACGgaagcactttatttttattttccttttcttttcttttttttggtttttgcgACTAGAAAACAGTGTTCCTCGGAACCGGCGCTCAAGAATCTAACACTCAGCGCTTTTTCTTTGATACATTTCCGTAGGTCTCTATACGAATGGTACTTACCTCACCATCTTGCTCCGTAGAACCGTGTAAAACATGTTTCGAGATGCGGCTGGCGTAGCGATTGTGTGCTAGAGGTTTAAAGAAGGATCGTGTTGACTAGACTTTCACTTTATCTGTGTTTTTAGTTCTGGTACTCAGTTGTTGAGTCACGTTGATCAGCAAAAACAAAGTGAAGAATTCAGGTGAACGCAGCAAACGTTGGTTGAAGTGCACTTAATTCAGTAATTCAAATGGGAATGTTTCTGTCGTCGAGCATTTGGAGATGTCGGGTGTTGGAATTTCGGCCTATTTTATAATTGACAATCAGAATTTTTGGTTTGGTACTAAGTCTGCCTAATGTACGAACACGAAACATCAATCCTGAAGAGCGCGTTTTAGAGACGCCAAAATATTTATGCTGAAACTTCCATCTAATTCCGCAGTCAGTGAGCGAACTGGAAGATGGACGTCGCGTAAGTGCTAAAGTGGGCCATGTCTCATTTCTAATCGGACTTGTAGCATCTACTGGAATGGCTTCTCGcaagattgcatttatttgctttgtcCCTTTGCCAAACAAATATCGACTATCCGTTCGAAGTGTTAAGTTCCCTCAAGCCCCGTTTTTTTATCCTTGACCAAAGATGTGACGTGAGCAACACACATATCAGATCTTTTTTCCAGATGTACAGTGGGGCTTCCCTATACGTTTTATTTAGCCAAAAATGAGGATGGTGCGGCGTTTTCGTGTTTCGCGAGCCAGTGCCATAAATCGACTCAAAATCCGAAATATGTTCAGTGGAATTGTTTTTTTGGCCCAGCAAGCGTTTTAACAGTTTTTCCGTCAGCCAGAAGTGCAACTTGAGCCGTGGTTCTTTTGCTGACTGCACATCAGCAGCGATTTCATTCAGAGGGCTTTCAAAGCAAGTGAAGGATATTCAGAAACACTTAAGTCTCTATTTGCTTTGAGTGTGGCATTGGGCCTGATGGACGCACGATTCATTCGACGAAATCGAATTGTAGACCTTCTGGGCCTTACTGCTCCGGAAGCCACGTTCCCAAAACCAAGACTTGCTACTGTAGAGACATCATTGTTTAACTACTGCCAGTGCTGAAGAGCTGCTACAATACTGTGATAAGTGTAATCGATTGTATTTGGAACACTGGGAGTTTCGCGGGCAGTGATTGGCCGGATCCGAAACAGGATCATTTGATTGGACGATTGACCTAAATCAGTGTACAgcgggatttttttttttttgtcctcttaAAAACCAGAACAAGGCATCAGAGTGCAATTTAACTAACTGCAATGGAAAGCCTTCATcctgtgtttttgcatttcgCATTTGATCTTGTGATCTCTTACTTTTGTTGTGAACATTGTTTTTGTGAAGAGTGACTGCTCAATGTTTatacttaaattatttatgaaatatagtGTCTTGTTAGAGAAGTTAAGCTCCATACTCTTGCTGTTGAAAAACGTTTGAGATGTGATTGTACTGCCACCTAGTGGGTCACCATTGTTACATCAGTGTTTTAGTATTGTACGgatgctgttaaaaaaagacaaaaaaggaaaaaatgtgttatttaaaacaataaatgaaaaatacgtAAA

Function

GO:

id name namespace
GO:0046658 anchored component of plasma membrane cellular_component

KEGG:

id description
K06847 RGMB; RGM domain family member B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55752 lncRNA downstream 41304 19286627 ~ 19286848 (-) True G37801
TU55751 lncRNA downstream 45461 19282377 ~ 19282691 (-) True G37800
TU55750 lncRNA downstream 46060 19281865 ~ 19282092 (-) True G37799
TU55741 lncRNA downstream 102723 19224352 ~ 19225429 (-) True G37792
TU55738 lncRNA downstream 150268 19175463 ~ 19177884 (-) False mtx3
TU55882 lncRNA upstream 165319 19505921 ~ 19510282 (-) True G37877
TU55941 lncRNA upstream 361467 19702069 ~ 19702343 (-) True G37926
TU55943 lncRNA upstream 362818 19703420 ~ 19703685 (-) True G37928
TU56076 lncRNA upstream 615826 19956428 ~ 19956662 (-) True G38019
TU56164 lncRNA upstream 712748 20053350 ~ 20055798 (-) False G38058
XM_043239239.1 mRNA downstream 4613 19314148 ~ 19323539 (-) True erap2
XM_043239240.1 mRNA downstream 5142 19314148 ~ 19323010 (-) False erap2
XM_043239112.1 mRNA downstream 15007 19297299 ~ 19313145 (-) False LOC122345207
XM_043239111.1 mRNA downstream 15008 19297299 ~ 19313144 (-) False LOC122345207
XM_043239113.1 mRNA downstream 15621 19297299 ~ 19312531 (-) True LOC122345207
XM_043238495.1 mRNA upstream 79280 19419882 ~ 19424139 (-) False si:ch211-117c19.1
XM_043238494.1 mRNA upstream 79280 19419882 ~ 19424139 (-) True si:ch211-117c19.1
XM_043239634.1 mRNA upstream 83596 19424198 ~ 19441113 (-) True mamdc2a
XM_043239635.1 mRNA upstream 85113 19425715 ~ 19441113 (-) False mamdc2a
XM_043240408.1 mRNA upstream 170183 19510785 ~ 19520743 (-) True fam189a2
TU54999 other downstream 2614985 16687260 ~ 16713167 (-) True G37277
TU54996 other downstream 2614985 16687415 ~ 16713167 (-) False G37277
TU54976 other downstream 2695031 16596855 ~ 16633121 (-) True G37258
TU54936 other downstream 2949657 16376508 ~ 16378495 (-) False LOC122344728
TU54865 other downstream 3071413 16254149 ~ 16256739 (-) False LOC122344710
XR_006251078.1 other upstream 526784 19867386 ~ 19935576 (-) False kcnt1b
XR_006251077.1 other upstream 526784 19867386 ~ 19935576 (-) False kcnt1b
XR_006251079.1 other upstream 528212 19868814 ~ 19935576 (-) False kcnt1b
TU56161 other upstream 711057 20051659 ~ 20055798 (-) True G38058
TU56325 other upstream 784987 20125589 ~ 20127390 (-) True G38140

Expression Profile