RNA id: XM_043239243.1


Basic Information

Item Value
RNA id XM_043239243.1
length 4275
RNA type mRNA
GC content 0.48
exon number 21
gene id ap2b1
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 21925498 ~ 21953026 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGTCCGTTGGTTCCGcgcttcattttgtttttccgGGTGCGCTCCATCTTCCAGCGCCGACCAAAAGCAGAGGCAGCAACCGCATCTCCCATCTCGCCGGGAAGCGCTTCTGTAATCGAGGATTTTCCTATATTGCGTCGATTCTTGCATCCTTTATCTGAGAAGCTGTCAGAATGACCGACTCCAAGTATTTTACCACCAACAAAAAAGGTGAAATCTTTGAGCTGAAGGCCGAGCTGAACAATgagaagaaggagaagaggaAAGAGGCAGTGAAGAAAGTCATTGCAGCCATGACAGTGGGCAAGGATGTCAGTTCCTTGTTTCCAGATGTGGTAAACTGCATGCAGACGGATAACCTGGAGCTGAAGAAACTGGTTTACCTGTACCTTATGAACTATGCCAAGAGTCAGCCCGACATGGCCATCATGGCCGTTAACAGCTTTGTCAAGgACTGTGAGGATCCAAACCCTCTGATCCGAGCTCTGGCTGTGCGTACAATGGGCTGTATTCGTGTGGACAAGATCACTGAGTACTTGTGCGAGCCTCTGCGAAAGTGTCTGAAGGATGAAGACCCCTATGTGAGGAAGACCGCTGCAGTGTGCGTGGCCAAACTGCATGACATCAACGCCCAGATGGTGGAGGACCAGGGCTTCCTGGATTCTCTCAGGGACCTGATCGCTGATTCCAACCCCATGGTTGTGGCTAATGCAGTTGCTGCCCTGTCTGAGATCAGCGAATCTCACCCCAACAGCAACCTTCTGGACCTGAATCCTCAGAACATCAATAAGCTCCTGACAGCCCTCAACGAATGCACTGAGTGGGGCCAGATCTTCATCCTGGACTGTCTCTCCAACTACAACCCCAAAGACGAGCGTGAGGCCCAGAGTATCTGTGAGCGTGTGACCCCTCGTCTCTCTCATGCTAACTCGGCTGTGGTGCTGTCAGCGGTGAAGGTACTGATGAAGTTTCTGGAGCTCCTGCCTAAGGACTCCGATTACTACAACACTCTTCTGAAGAAGCTCTCTCCTCCCCTCGTCACGCTCCTGTCTGGGGAACCCGAGGTCCAATATGTCGCCCTGAGGAACATCAACCTTATCGTGCAGAAACGACCCGAGATTTTGAAGCAAGAGATCAAAGTGTTCTTTGTCAAGTACAATGACCCCATCTATGTCAAACTGGAGAAACTGGATATCATGATCCGCCTGGCCTCTCATGCCAACATCGCCCAGGTGTTGGCTGAACTGAAAGAGTATGCCACTGAAGTGGATGTAGACTTTGTTCGGAAAGCCGTTCGAGCCATTGGCCGTTGTGCTATCAAAGTGGAGCAATCTGCTGAGCGCTGTGTTAGCACTCTGCTGGACCTCATCCAGACTAAGGTCAATTACGTCGTGCAGGAGGCCATTGTGGTCATCAGGGACATCTTCCGCAAATACCCCAACAAGTACGAGAGCATAATTGCCACTCTGTGTGAAAACCTGGACTCTTTGGATGAGCCAGACGCTCGAGCTGCCATGATTTGGATTGTGGGAGAATATGCTGAGCGTATCGACAATGCCGATGAGCTCCTGGAGAGCTTCCTTGAGGGCTTCCATGATGAAAGCACTCAgGTCCAGCTGACTCTGCTGACAGCCATCGTGAAGCTGTTCCTGAAGAAGCCCTCAGAAACTCAGGAGCTGGTTCAGCAAGTGCTCAGTCTGGCCACTCAGGACTCTGATAACCCTGACCTGCGTGATCGTGGCTACATCTACTGGCGTCTGCTGTCCACCGACCCTGTGACCGCTAAAGAGGTTGTGCTGTCTGAGAAGCCTTTGATTTCAGAGGAAACAGACCTGATCGAGCCCACCCTGTTGGATGAGCTCATCTGCCACATCGGCTCGCTGGCTTCCGTCTATCACAAACCCCCCAATGCCTTTGTGGAAGGAAGCCACGGCATTCACCGCAAACATCTGCCCATCCAGCACGGCAGTATCGACACCGGGGAGAGTCCGGTCAGTGCCGGCCCGGCTGCTTCTATCGATCAACCCCAAGTCATTCCTTCTCAGGGTGATCTTCTGGGAGACCTGCTTAATCTGGACCTCGGTCCCCCCGTCAACGTGCCCCAGGGGTCTTCCATGCAGATAGGCGCTGTGGATCTCCTCGGAGGTGGTCTTGACAGTTTGGTGGGCCAGAACTTCATCCCATCATCGGTACCCAACACCTTTGCTCCGTCTCCTACACCTGCTGCTCTCAGCAGCGGCCTCAATGACCTGTTTGAGTTGTCGTCAGGAATGTCCATTGCTACAGGAGGATATGTGGCACCTAAAACTGTATGGCTACCAGCAGTCAAAGCAAAAGGACTGGAGATATCTGGAACCTTCTCTCGGCGTCAGGGTCACATGTACATGGACATGTCCTTCACCAATAAAGCCCTGCAGCACATGACTGACTTTGCCATCCAGTTCAACAAGAACAGTTTCGGTGTGATCCCCACCACCCCTCTCCCCGTTCACACTCCACTGATGCCCAGCCAGAGCATCGACATCTCCCTTCCTCTCAACACCATCGGCCCTGTGATGAAAATGGACCCACTCAACAACCTACAGGTGGCTGTGAAAAACAATATTGATGTCTTCTACTTCAGCACGCTGATCCCTCTCAATGTCTTCTTTGTGGAGGATGGCAAAATGGAGCGTCAGGTGTTCTTGGCCACGTGGAAGGACATTCCAAATGAGAATGAGCTGCAGTACCAGATCAAAGACTGCCACTTAAACGCAGATACGGTGTCAGGCAAACTGCAGAACAACAATGTCTACACCATCGCCAAGAGGAACGTGGAAGGCCAGGACATGCTGTATCAGTCACTCAAACTTACCAATGGGATCTGGATCCTCGCCGAACTCCGCATACAACCTGGCAATCCCAATTACACGCTCTCTCTGAAATGCAGGGCTCCAGAGGTGTCTCAGTATGTGTACCAGATGTACGATGCCATTCTGAAGAATTAAACGTCTCCATCATCCTTTTCTCCCTCTACGTATATTTGTCTGCAGGATCCAGCTCTCCATGTTTTCTGCCATTGTTTTATATCCGTCTATAGGTACCAGTTTACTCCATGTGCCCACTACGTAAAAGTCATGTTCGGTGGTAGCCAAATGTCTTGATGTTGTTGATAAAGTGTTGAAGGGATTTTTGGAACACGGCTCCAGTGTGATTCtatatttttgaatgctttGACAGTGCTTCACCTTCACACGCCCTGGATTGGTCATATGCAAAGAAGGAGAAAGTGTACGAGTTGAATCTATAAATAGCGTCAAGGGAATGTAACCAAGCAGAAACGTAATGTGGATGTACTTTATAAAAGTTATCCTATTATAATGGTAACCACTGAAAGACCACTTAGTTATCGTTTTTGCATCTACGTCATGCATTTTGGCAttattgcttttgtttcatTCTCTGATATGCTGCAGTGTTGCTTCATGCAATTGTACAATGTGCCACCTATCTGATATTAGCCTTGCATGCTTTGACCAATGCAAAAACGCCACATTCCTTTTTAACGTTTTGTATACCTTGTTCATCCTAACCACTGTATGAACATGCCGACACTCCATCACTATCTTATATTGTTTGTACTGCTATGAATCAACTTAATGTGATAGAAAAGACTTAAAAGACATGTTTTCTATCGATCTTGTATAAGTGGGCCATCTGATATTCATTCCCAGACCGAATCCATCCATATGTGATATATTGTGCTTGTGAAAGTGAGTAGGTTTTGTGAGGTAGTTGTTggtctctttggagtgttagaAATATCTGTTCAACATTCGTATACAACCACGCTCAGCTTTGGATCGAACTAATACACTAACAAATAGAGATGCAATAAACAGACTCGGCGATACGAGGACGGATGACTTTTGGACTGTTGAGTAGAGTTTGTTTTGTTCCCCGAAACTGTACTAGTCTTCATGGTGGTGCTGGTGACTAAATGTGAACCTTTTTTGTTGCCATAGTTGCTAATGTGCCTGTGAACCTGCATGTAAGCAGCGTCCAATAAACATCTGCCAGTAGAACACTTGTGTAAGAAGGTGAAATATTAAGACCGTAACCCTTATATGTGCAAATATGAGTTTTAATGATTACCAATGTTGCCAATGTGATCGCAGTGCATCTCGATACCGAAATGTGAAGTGTGACATAAAGAAATGACTGATCGGAttgtttcagatttattttatggatggtaattcaaaataaagtcaGCAGTGTGTATTCACCCTCAAA

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0030131 clathrin adaptor complex cellular_component
GO:0008565 obsolete protein transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU56992 lncRNA downstream 48913 21867615 ~ 21876585 (-) True G38523
TU56990 lncRNA downstream 58037 21867128 ~ 21867461 (-) True G38521
XR_006250963.1 lncRNA downstream 85398 21836313 ~ 21840100 (-) True LOC122345027
TU57036 lncRNA upstream 55860 22008886 ~ 22010107 (-) True G38543
XR_006250931.1 lncRNA upstream 85334 22038360 ~ 22041267 (-) False LOC122344815
XR_006250930.1 lncRNA upstream 85334 22038360 ~ 22041263 (-) True LOC122344815
TU57040 lncRNA upstream 85354 22038380 ~ 22041219 (-) False LOC122344815
TU57041 lncRNA upstream 85354 22038380 ~ 22041219 (-) False LOC122344815
XM_043238440.1 mRNA downstream 3425 21909774 ~ 21922073 (-) True LOC122344852
XM_043238785.1 mRNA downstream 29419 21886007 ~ 21896079 (-) True hnrnpul1l
XM_043238786.1 mRNA downstream 29470 21886007 ~ 21896028 (-) False hnrnpul1l
XM_043238398.1 mRNA downstream 41476 21877081 ~ 21884022 (-) True LOC122344823
XM_043240555.1 mRNA downstream 58459 21856983 ~ 21867039 (-) False sympk
XM_043240128.1 mRNA upstream 8404 21961430 ~ 21967136 (-) False orai2
XM_043240127.1 mRNA upstream 8404 21961430 ~ 21967126 (-) True orai2
XM_043239120.1 mRNA upstream 14961 21967987 ~ 21984219 (-) False bckdk
XM_043239119.1 mRNA upstream 14961 21967987 ~ 21984217 (-) True bckdk
XM_043240539.1 mRNA upstream 36919 21989945 ~ 21997417 (-) False lrwd1
XR_006250934.1 other downstream 41476 21878156 ~ 21884022 (-) False LOC122344823
XR_006250933.1 other downstream 41476 21878156 ~ 21884022 (-) False LOC122344823
XR_006251046.1 other downstream 99393 21809013 ~ 21826105 (-) False akap10
TU56743 other downstream 305915 21612688 ~ 21619583 (-) True G38355
TU56747 other downstream 556450 21364238 ~ 21369048 (-) True G38359
XR_006251116.1 other upstream 6759 21959785 ~ 21959884 (-) True LOC122346220
XR_006251119.1 other upstream 86875 22039901 ~ 22040034 (-) True LOC122346224
TU57575 other upstream 1649218 23602244 ~ 23604733 (-) False LOC122345364
TU57636 other upstream 1798854 23751880 ~ 23756588 (-) True G38917
TU57720 other upstream 1934277 23887303 ~ 23887680 (-) True G38973

Expression Profile