RNA id: XM_043239256.1


Basic Information

Item Value
RNA id XM_043239256.1
length 2361
RNA type mRNA
GC content 0.59
exon number 15
gene id add2
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 2586587 ~ 2605917 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCTCGTCGTCTTCAACCAGCAGCTGCATCATCCtcctcatcaccatcatcatcatcatcatccagcaGGGAAAAACATCCAGAATAAGTCATCGGTGATCCGACAAATCCACGCCATTCTCTTCTCGGAGCCCGAGGCCCTTCGGAGAGCGCCTGTCTGAGTCTCGCGCGGGGCGGTGATGAATCCCGCAGGCGTGGTCGTGGGCTGGTCCAGCCTGCCATAagcgtcaaaaaaaaaaacagagggaTGCGGAGGTCCGGGAAAACACAGCCCGAATCAGCACCGTGCGCACCGGGGACGCGAGCCTGATAATCCAGCGCGGGGGGTTTGACGCTTTGCGCTGCGTCGCAGATTCACGGGGCGTCCGCGCGCGCGAAGGACAAAGAGGAGAGGATGCTCTAAGCCGCGCCGCCTGGTCCTGCTTCGCCTAGCCTTTCCTTTTTCTACGTTTTCTCTCTATCCTCTTCTGGTCCGTCCCACGCCGGGAAGATGAGCAGAAGTCCCACTCCTAAAGGGACGCCGGTCCAGCACAGTCCGGTGGACGGCGAGTGTCTGGAAGGAGAAATGATGCAGTCCCCGCAGCAGTCCACGCCATCCAGCGGCCTGAAGAAGCGCGTCTCCAGCCTCCTGCAGAGCCCGtcctTCCGAGAGGAGCTGGATGTGTTGATTCAGGAGCAGATGAGTAAAGGAGGAAGCTCCTCGAACCTGTGGGCTCTCAGACAGATCGCAGACTTCATGGCCGCTCACGGATCTCCGGCGTCGCTGCCCGTCTCTCAGTCCACTGTGAGTATGGTGACCCCCATCAACGACCTGCACGGATGGGACCCGGGCTCCATGGTGAAGGGCGAGAGACTGATGCGCTGCAAGCTGGCGAGCGTCCACCGTCTGCTGGACCTGTACGGCTGGACACAGCTGCCCAACACCTGCCTGACGATGCGTGTTAGTAAAGAGCAGGAACATTTCCTGGTGCTGCCGGACGGTTTGGCCTACGGAGAGGTGACCGCCTCCAATCTGGTGAAGGTGAATGTTCTCGGGGAGGTTGTGGAGAGAGGCAGCACTTCTCTGGGAGTGGATCAGTCTGCGTTCGCTCTTCATTCTGCGGTGTATTCGGCTCGACCCGACATCCGCTGCCTTCTGCATCTTCACACTCCAGCCACGGCCGCGGTATCAGCCATGAAATGTGGCCTTCTGCCGCTATCCCATGAGGCTTTGCTGGTGGGCGACGTAGCTTATTACGACTATAATGGAGTgatggaggaagaagaggacAGAGTGGAGCTCCAGAAGAGCCTCGGCCCCACATGCAAGGTGCTGGTTTTGAGGAACCATGGAATCGTGGCGCTGGGAGAATCGGTGGAGGAGGCCTTTTACACAATCTACCACATCCAGACCGCCTGTCAAATACAGGTGGCAGCACTGTGCAGCGCCGGAGGAGAGCAGAACCTGATCCTTCTGGACCGCAGCGTCCACCGACCCGTCTCCACCGGCACCGTGGGCTGGGCCGGGTCCACCTTCGGCCCCATGCACAAGAGCAGGCTGGGAGAACACGAGTTTGAAGCATTGATGAGGACGCTCGACAACCTGGGTTATCGTACGGGTTACGCCTACCGCTTCCCCGTGCTGCTGGAGCGCTCCAGAACCAGGAGAGAGGTGGAGGTTCCTGCCACCGTCACCTCCTTCTCCTTCCTCGAGGACGGAGTTCAGCCTCACCCTCGTCTCCATCCTCACGCCCAgagacagcagcagaagacccgGTGGCTGAACACCCCAAACCTCTACCAGAAGGTCAACCAGGACCAGTCCAGCCCGGGGCATCGCACCACGtGGCAGAAGGCCGAGGAAATCACGCAGGGCAGCGGACGCTCCATCAAGATAGAGAATCCAAACCAGTTCGTCCCTCTGTTCACCAACCCACAGGAGGTGCTCGAGACCAGAAATAAGATACGAGAGCAGAACCGTCAGGACATGAAAACAGCCGGACCTCAGTCTCAGGTGTTAGCCAGCGTCATCACAGACAACAGCCCACCGACTCCAGAAGCTGTGGAGCCTCCACCGGCCCCGGAGCCGGAGACCCCGAACCCCTTCAACGAGCTGACAGATCAGGAGCTGGAGGAATACCGCAAGGAGGTCCAGCGCAAGCAGGACGCTCTGTACTGTGTCCTCCATCTGTCTTCACACCTGTGTGCTTCTCTGTCTGTGTTGTAACTCGTAGGACAGTCGTTTGCTACTGAGATCTTGTCTCACTAATGGGAACGCCACCGAAGCGGTGCAGAACGATAAAGGCGACGAAAAGAAACAGCAGGAGGAGCTAGAAAAGCAAATGAAGGCCCTCTCCACCGCCGACGCTTCGGAGACCACGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251082.1 lncRNA downstream 151758 2433286 ~ 2435700 (-) True LOC122346060
TU48232 lncRNA downstream 162646 2422985 ~ 2424812 (-) True G32740
XR_006250936.1 lncRNA downstream 202757 2383907 ~ 2384701 (-) True LOC122344845
XR_006250939.1 lncRNA downstream 208063 2377967 ~ 2379395 (-) True LOC122344860
TU48218 lncRNA downstream 211795 2374002 ~ 2375663 (-) True G32727
TU48406 lncRNA upstream 46531 2652444 ~ 2728807 (-) True G32870
TU48421 lncRNA upstream 144046 2749959 ~ 2797599 (-) True G32881
TU48423 lncRNA upstream 159370 2765283 ~ 2766771 (-) True G32882
TU48425 lncRNA upstream 161866 2767779 ~ 2774190 (-) True G32883
TU48427 lncRNA upstream 163288 2769201 ~ 2770371 (-) True G32884
XM_043238138.1 mRNA downstream 2006 2580548 ~ 2585452 (-) False snrnp27
XM_043238136.1 mRNA downstream 2017 2580548 ~ 2585441 (-) True snrnp27
XM_043238137.1 mRNA downstream 2020 2580548 ~ 2585438 (-) False snrnp27
XM_043240230.1 mRNA downstream 7655 2555476 ~ 2579803 (-) True mxd1
XM_043240229.1 mRNA downstream 7658 2555477 ~ 2579800 (-) False mxd1
XM_043240111.1 mRNA upstream 1301 2607214 ~ 2609585 (-) True LOC122345702
XM_043240515.1 mRNA upstream 218258 2824171 ~ 2866043 (-) True tet3
XM_043240518.1 mRNA upstream 218258 2824171 ~ 2855093 (-) False tet3
XM_043240517.1 mRNA upstream 218258 2824171 ~ 2855093 (-) False tet3
XM_043240516.1 mRNA upstream 218258 2824171 ~ 2845284 (-) False tet3
TU48396 other downstream 2032 2580548 ~ 2585426 (-) False snrnp27
TU48378 other downstream 33312 2496504 ~ 2554146 (-) True G32857
TU48163 other downstream 564564 2020108 ~ 2022894 (-) False LOC122344636
TU48139 other downstream 619710 1966637 ~ 1967748 (-) False G32676
TU48454 other upstream 329830 2935743 ~ 3012819 (-) False LOC122344624
TU48464 other upstream 345549 2951462 ~ 2960177 (-) True G32908
TU48805 other upstream 1279512 3885425 ~ 3894475 (-) False piwil2
TU48804 other upstream 1279637 3885550 ~ 3894475 (-) False piwil2
TU48820 other upstream 1539014 4144927 ~ 4193081 (-) True LOC122346168

Expression Profile