RNA id: XM_043239262.1


Basic Information

Item Value
RNA id XM_043239262.1
length 5030
RNA type mRNA
GC content 0.42
exon number 3
gene id LOC122345271
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 12265270 ~ 12271264 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGAGAgcaagagtgagagagagagaggaaaaaacatttgaaaagagaTGCCACAGAGGGACATCTCTTTCACGTAGTGAAACCACCCTCAAGCCCAAACTTTTCAGACATCAAAAGGTGAGAAGAAGAATAAATGCTCAGAGGTCAggaatagaggcactttaatgCAGTCTGCGGCTACATAAAAGAACCAAAACATCATAGGACTTTACTTTCCTACATTCTGCACTGGAGTGACCACTGACATTCTATCCAGAAGAAAAGGTTGAGTACTTCAAATTAAACGCATTTGTCACTGGAACTATAGATCTAGATTTTGCTCCGGTGAACCTCTGCACCTATAGCTGATACGCACCTCATTTGCTTCACATCATGGGTGTCAGCAGGAATTACTTTTGGATTACATGTTCATCCAGCACATCTATTTTATTGGCCTTTTTCCTGCTCTTGTGGGGGCCCTTCTGTGCACAGAGCAGCCCTATCGGCTCCCCGGAGAGGCTCCGCACTGCTTCAGGGCTGGATGACGGACATGGAGGGGTTCTGGATCCCTCACTTCTGGAGCAGGACAGTGAGGTAGACATGCAGAGTTTGCTGGAGACCCTGAAAGGACAGTTTTTGCGCACTTTTAACCTGACTCGTCCTGGCCCCCCTGTGCAGGCAGGGGCCACTCGAGTAGAGCCCCCTGAGTACATGCTGGAGCTCTATAACCGCTTCGCCAATGACCGAACAGCAATGCCTTCTGCAAACATCGTAcgcagttttaaaaatgaagactccTCCCCATATAGTGTGGGACCTGGCGGGGTGAGACGACACCCACTTATCTTCAACGTGTCTATTCCACATCACGAGAGAGTCACTGCAGCTGAGCTCCGACTGTACACTTTGGTCCAGACTGACCGCAACAAATACGCTGGTGTTGACAGAAAAGTGACAATATATGAGGTCAAACAGCTTGAAATAAACAGCACTCAGCAGATAAGAGGTGACAATATTGATGCAGGAAATCAAACCAAGCAAGAGGGAGAAACAGAGCTAGTGGAGTTGGCGTCGCGACAGGTTTACGGTACAGATAATGGGTGGGAGTCTTTTGACATGACCACTGCGGTGCATCTTTGGCGGAAATCAGATTATGGTACCACCCACAGGCTGGAGGTCCACATAGCCAGTTTGAACTCTCAGAGTTTGATGTCAACCGAAGGTAAGGAGGAAGGTAATGCCAAAGGAGGGGACATGGACATTGACACCAGCCCAGAGGACAAACACAAACCCTTAATGATCGTCTTCTCTGATGACCAGAGCGGAGATCACCGCGGAGACAAACGGGAGCTCAACGAACTGATCCAGCATGAGACAACTGGGCCTGGTGTTCAAGACAACCTTGACCTAGAACTGACCGGTCTCTGGGACGACCTGGAAGTAATGGGACAGAAAGATGGgaatgaggaagaggagcagagCGAGGAGGCTCTCCTACAGATGCGTTCCAACCTTATCTATGACACAGCGTCTAGAATCTCGTCGAATGCCAAAGGCAaccaatgtaaaaaaacatccCTCTATGTGGACTTCAAAGACATCGGCTGGGACAGTTGGATCCTAGCACCCTCTGGATATGAAGCCTTTGAGTGTACGGGGACTTGCATGTACCCTTTGACCAAACACGTTACACCTACAAAACATGCCATTGTGCAAACTTTGGTCAGTCTGAAAAGTCCACAAAGAGTGTCCAGGGCTTGTTGTGTTCCCACTGAGCTAGACCCCATCTCCCTGCTCTACCTAGATGATGCAGGTGTGGTGACGTATCAGTATAAATATGAAGGTATGGTGGTAGTGAAGTGTGGATGCAGATAGTATTTAATGGACATGGAGAAGTGGGCTGAATCCAATCCAGTTTGGATTGGAAAGAGATTAAAAGACAGTCATTGTCTATGACTAACATTCCAAGTTTCTTCCAAATGGCAGTGGATAAGCTCTTACTCCCAACCTTAACAGCGTTAGCAGGAGTCATGAAGTCAGTTGGAGCCATGTGACGAGGGGCCACAATGCAACATTTAGTGGGAACGGTGTCCATTTCATCCCTGCTGAACAAGGATTGGGTGGAACATAAGACAATAATTGAACCACTGACACGCCTCAAGATCAGCCGGGATAAATGAGCTGTTCTTATCAGTAAAGACTGAAGTTTAAGTGAGAGATTATATCAACTCCAACTAGTTACATACTTGGCCATATCATTTGCGTCAGCAGAGTTCTTGCTAAGTGGGTGTTTTGTAAAGATGGCAGCGAACTCAAGCACCACTGGCTCAGTCCAGTGACATTACCAGAAACAAGAGTCCTGTGATACTGCCTGTTTCCAGTTTCCACAAAGCTCAGTATCGTATCTGTCACGACACCACCAAGTCAATATACAGCTTCCTGCCTAACAGAATGTGTTTGATATGAACTGTCCAAGTTGAAGTGAAACACTTATCAGAAAAGTCTTGTAAACGAGGGATAAAACAGACCAGAATGGACCAGTCTTGTCTTTCGAAATGTGTATGAGAACACCTACTCTGGATATCCTAAGTCCACAATGGGTCTCATTCATTAACCACTCAAATTCATCTgactttatgaatttttttaaaaaaatctgactttatGAATATGTTACGTCATACTGAGTAAAAAGTAAGAAAAGTACATTAtagcttgtgttttatttttttttttaatgaaaaaaagcacaactgtACTTATGTACAGGTTTCTAATCATAGGTTTGTAATCTAGGTCTGTGTAAAAGGTGTATTTGAACTGGTTTTGAGGAAGCAAAAAGCCATACGAGTGTGAAGAAAGGCTGAAATGGAAAGGTTGTGCGGAAAGCAGTTAATGGTTTAACCATGTTTTATGCAAaggtgaccctggaccacaaaaccagtcataaggtcagtttttcaaaattgagatttacaCTTCATCTGAAGGTTAGGATAGGATATAGGACCATATTTGGCAGAGATACGACTAttaaaaaatctggaatctgagtgTGCAAAAACTcataatattgaaaaatgtgcatttaactttttccaaaaaaagttcttagcaatgcatattaatattcaaaatttgGTTTTGACATTCACGTTAGAAAAAATTTAcagtagaaaaatatttttatggaacatgatctttatacTAATGAATTTTGGCAtaagaaactgtatttttggCGATTGCTACTATACCCGGGTGACTGGTTTTGGGGTCCAGGCTCAAAAATAAGTATGAAAATTAGATGAAGGAAAACAAGAAATTCATGTGCAATGTATGTGTTatgcaaaagtgttttgtgaaAAGTACTCCTGTgggtttaaatacaaaataatcaatGAATGAGACCTATTATTTCTGTACACAACCTAAGCAACAAAACGATGATCATTAAAGACCTGGAAAAGGACAATATGAACTTCTGAAATGTCTCAAACCAGTTAAGCCGTTTCGATATGCAACATTTTCTTGAGTCACTTAATGCTGCCTTTATCCTTTCTTCAGTAACACTTCTTTCTACTGAAATGCTGTCTGCATTTCACCTTGTCACTGCTGAGTTGGGACAGTTGACAAAGGATGCATGTTGTACATCTTAGTCCATCCGCCCTGTTCCAGACGGCATCAGCAAGCGGGATACTGTGGGCTCTCACACCCTCCTGCTCCACATGCCGTGCGAGCTGTGCTCCCACCCCGAAAGCATGGCTGTGATAAGAAGGTGTCAGGACTGAAAAACATGTCTGTGACGACTAAAGACAATTCCAAGCTGCACGGAGGACTGGAGACAACTGATTCCTGGGAATGAGAAGCCAGTTGGCGGTTGTATATCATATCTACTTTTTGACCCCAAACTACCTTAAAGCGAAGACACATCATTTACTCCCCATCGCTCTCCTCCTGTAGTCTTCTGTCAGTCTTCTTCTCCTTTTGGACCCTTATCGCTGTCAGGGCATGAGGATGAATGGAAACTGTCTCGCAAGGTCATGCCACCCACAGATATCTTTCACAAGACTTTGCAACCTGATAATATCTTCCAGAATTATTCCCATGCCTGATGCATACTTTGCATTACTGGCTTTGTTATTGTTGAAGTACAAATTGTGTTCTGCTGCTTTGAATAATTATAAagcttatttattgattaacttatttgtttttattattatttaggtgACATTGTATAGTAATACTGTACATATGACTACATACACTATACGAGTACATGATACTGTATGATGTTGTGCAAAGAATATGGGTATACAAGTATATgagttaatttaaaatcaaattattaactgtaataatttatcattttctcATGTAGTATGTGTTCAAATACTCAGTGATGTTGTATGCGCTTTAATCATCGCTTTTCAAGCACTGACGTCTTGTTAGGATTTGTATATATCTTTAAATAGTTTGTTGATCCTCTTGTTCCTTGCACCCAGATTCTCCATAACTCCTTAACAAGATATATTTAGCCACGATCAGTCCAGAGCTTGCTGTTTAGACATTGGGTGTGGGAGCGATTCATAAATTTAACTTCCCATTGAAGACCAGCAGCTCAAAGGCCCATAGTTTACAAGTGTCAGACAGATCTACATCCATGGGAAGCTGACTGGAAACTAACGACCACACAGGCTCATTTGCTCTGCGGATTGAGACTGTGCAGATCtatttgcttcttttttgcTTCGGTTTGGTTTGGGCTTAGGAAGTGTTCAGCGtcaatctttaaatatttaagatgtGAATGTGGTAATTGCCAAATGTATTTTGCCATGTACAAACGCACagaagttgtaaataaaatgatattttgaagaaacttcctgtgatatttttcttttatattttagtatttatcaGCAAATTTGTCATTGACAAAACTCTTCTGTCCTCAGAAATTCTGTTAATGTCCAAGTTAAAAATTGGTGCTTGAAGTGTCTCGTTTGTTTTGCCACAAAAGCCATGACAGAAAAGTTAAACCAA

Function

GO:

id name namespace
GO:0040007 growth biological_process
GO:0060840 artery development biological_process
GO:0005576 extracellular region cellular_component
GO:0008083 growth factor activity molecular_function

KEGG:

id description
K22670 BMP10; bone morphogenetic protein 10

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52608 lncRNA upstream 83246 12173283 ~ 12182024 (+) True G35733
XR_006251023.1 lncRNA upstream 278450 11943437 ~ 11986820 (+) True LOC122345698
XR_006251022.1 lncRNA upstream 278450 11980355 ~ 11986820 (+) False LOC122345698
TU52458 lncRNA upstream 489778 11773986 ~ 11775492 (+) True G35629
TU52435 lncRNA upstream 536669 11728276 ~ 11728601 (+) True G35606
XR_006250985.1 lncRNA downstream 6866 12278130 ~ 12279983 (+) False LOC122345282
TU52639 lncRNA downstream 7971 12279235 ~ 12283749 (+) False LOC122345282
XR_006250984.1 lncRNA downstream 13181 12284445 ~ 12285122 (+) True LOC122345281
TU52630 lncRNA downstream 14429 12285693 ~ 12287378 (+) True LOC122345282
TU52651 lncRNA downstream 85174 12356438 ~ 12358798 (+) True G35756
XM_043238179.1 mRNA upstream 19842 12237734 ~ 12245428 (+) True LOC122344656
XM_043240056.1 mRNA upstream 100334 12037448 ~ 12164936 (+) True tenm1
XM_043240105.1 mRNA upstream 322160 11924229 ~ 11943110 (+) True smarca1
XM_043240106.1 mRNA upstream 322160 11928604 ~ 11943110 (+) False smarca1
XM_043238754.1 mRNA upstream 363999 11876965 ~ 11901271 (+) True arhgef9a
XM_043239266.1 mRNA downstream 24991 12296255 ~ 12300181 (+) True LOC122345277
XM_043240845.1 mRNA downstream 163072 12434336 ~ 12457053 (+) False si:dkey-13n15.2
XM_043240843.1 mRNA downstream 172501 12443765 ~ 12457053 (+) False si:dkey-13n15.2
XM_043240842.1 mRNA downstream 172501 12443765 ~ 12457053 (+) True si:dkey-13n15.2
XM_043240841.1 mRNA downstream 172501 12443765 ~ 12457053 (+) False si:dkey-13n15.2
TU52593 other upstream 9598 12249138 ~ 12255672 (+) True G35720
TU52594 other upstream 9598 12249138 ~ 12255672 (+) False G35720
XR_006251021.1 other upstream 323198 11924228 ~ 11942072 (+) False smarca1
XR_006251083.1 other upstream 1202956 11046480 ~ 11062314 (+) False map7d2a
XR_006251113.1 other upstream 1332107 10926823 ~ 10933163 (+) False senp3a
TU52818 other downstream 242812 12514076 ~ 12516108 (+) False si:ch211-225b11.4
TU52846 other downstream 432107 12703371 ~ 12705241 (+) False iscu
XR_006251084.1 other downstream 532688 12803952 ~ 12807216 (+) False LOC122346073
TU53623 other downstream 1712833 13984097 ~ 13985706 (+) True ins
TU53776 other downstream 2019156 14290420 ~ 14292500 (+) True G36495

Expression Profile