RNA id: XM_043239266.1


Basic Information

Item Value
RNA id XM_043239266.1
length 882
RNA type mRNA
GC content 0.40
exon number 3
gene id LOC122345277
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 12296255 ~ 12300181 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGGAGGATCTGGCAGAGTATCACGGGAGCATTAGTAAGAGGCGAGCGGAAAAGATCCTGAGTGAAGCAGGCAGAGACGGCAGCTATCTGATCAGAGACAGCGCGAGCGCCGCGGGGTCTTactgcgtgtgtgtgctGTGTGATGGATGGGTTTACACCTACCGAGTTTTCAAACAGAAGGATGGCCTCTGGACAATAGAGgtgGCTCCTGGGATGAAGGAAAGACTCTTTAGGAAAGTTGCCAACCTTATTGCTGCCTTTAAGATCCCAGACCAAGGCATCTCTGTTCCTCTTTTGTATCCTGTAAACAGAgctaaataataacatacaaGCCACAACATACCTCAGAACAGTTTCTACATGCACGAGAGTGACTTCTCTGGGGTCTCTTAAACCTGTGGTGACTGTtgtaaatgctgtaaataatctgtgagatataaaaactataaatgctCTGCTAAAGCATGCTAAATAATTGGCAAGCCCTGTTACATAATACATTGTATACTTTAATTTTGATGTTAGTTTTtctctgccatttttttttttttgttcaagaaTAATTATCTCATGTTAGCATCAGCAACACAGATACACCCATGAGAGAAGAAGGCCTTGAACAAAATGTCAGACCTGAGTTCTGAGTTAGATTGCTATCTTGTTTTCCGTCTAGTAATGAGAGTTTGCTTAGcaagtgtttctgtgttttagaaAATTCTATTTCTGTACACTAAACAGGAAATAACAGTTTTCTCATTAAACTTCACTGAGCTACGAACTTCCTGCAATAATACCATCACAATAATGTTATAAACAAATTGGTCTTCCGTGTAAGGAAATTCAGAGCCTTTTGAAGTTACCAAATAAAACCcaaccaaaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52630 lncRNA upstream 8877 12285693 ~ 12287378 (+) True LOC122345282
XR_006250984.1 lncRNA upstream 11133 12284445 ~ 12285122 (+) True LOC122345281
TU52639 lncRNA upstream 12506 12279235 ~ 12283749 (+) False LOC122345282
XR_006250985.1 lncRNA upstream 16272 12278130 ~ 12279983 (+) False LOC122345282
TU52608 lncRNA upstream 114231 12173283 ~ 12182024 (+) True G35733
TU52651 lncRNA downstream 56257 12356438 ~ 12358798 (+) True G35756
TU52759 lncRNA downstream 236557 12536738 ~ 12544088 (+) True G35834
TU52820 lncRNA downstream 248485 12548666 ~ 12551180 (+) True G35855
TU52802 lncRNA downstream 267003 12567184 ~ 12672206 (+) True G35843
TU52838 lncRNA downstream 340086 12640267 ~ 12641645 (+) True G35864
XM_043239262.1 mRNA upstream 24991 12265270 ~ 12271264 (+) True LOC122345271
XM_043238179.1 mRNA upstream 50827 12237734 ~ 12245428 (+) True LOC122344656
XM_043240056.1 mRNA upstream 131319 12037448 ~ 12164936 (+) True tenm1
XM_043240105.1 mRNA upstream 353145 11924229 ~ 11943110 (+) True smarca1
XM_043240106.1 mRNA upstream 353145 11928604 ~ 11943110 (+) False smarca1
XM_043240845.1 mRNA downstream 134155 12434336 ~ 12457053 (+) False si:dkey-13n15.2
XM_043240843.1 mRNA downstream 143584 12443765 ~ 12457053 (+) False si:dkey-13n15.2
XM_043240842.1 mRNA downstream 143584 12443765 ~ 12457053 (+) True si:dkey-13n15.2
XM_043240841.1 mRNA downstream 143584 12443765 ~ 12457053 (+) False si:dkey-13n15.2
XM_043240844.1 mRNA downstream 143584 12443765 ~ 12457053 (+) False si:dkey-13n15.2
TU52593 other upstream 40583 12249138 ~ 12255672 (+) True G35720
TU52594 other upstream 40583 12249138 ~ 12255672 (+) False G35720
XR_006251021.1 other upstream 354183 11924228 ~ 11942072 (+) False smarca1
XR_006251083.1 other upstream 1233941 11046480 ~ 11062314 (+) False map7d2a
XR_006251113.1 other upstream 1363092 10926823 ~ 10933163 (+) False senp3a
TU52818 other downstream 213895 12514076 ~ 12516108 (+) False si:ch211-225b11.4
TU52846 other downstream 403190 12703371 ~ 12705241 (+) False iscu
XR_006251084.1 other downstream 503771 12803952 ~ 12807216 (+) False LOC122346073
TU53623 other downstream 1683916 13984097 ~ 13985706 (+) True ins
TU53776 other downstream 1990239 14290420 ~ 14292500 (+) True G36495

Expression Profile