RNA id: XM_043239279.1


Basic Information

Item Value
RNA id XM_043239279.1
length 2806
RNA type mRNA
GC content 0.49
exon number 20
gene id gfm2
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 6255418 ~ 6263302 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCAAAACGTGTGCGTTCGTAAACTGGTCCCGACTGTAACGACTCTTAAAAAACGTTTGACAGCTGCCCGTTTGCTGTGTTTAACATTAGTGGGGAAAGATATCACTGAGTTTGTTTTAGATGTCTTTTGCTTTATCGTGTCGTTACTGAGAATTAACCGTCCGTCCACGCGTTACGATGAATTTAATGTCAAGTCTGATCTCAACGTGACTTTGAGCGAGCACAGCAGTCATGTCTTGCCGTACAACTGAAGCTCCAAGCCTTTAACCAaagtcaaaatgcatttaattgtgcCGTTCCCAGTTTTTCGAGGGAGCATCAGACACCTCATGACCAGATCCTCACAGACGTGCATATGCAAAGTGAACTGGAGGagaaattatagtttttatcgAGATGAGGTGAAATCACTTCGAGCGGTGCTCAACCCTGACATCTCAAAAATTCGGAACATAGGTATCATGGCACATATAGATGCAGGGAAGACCACCACAACAGAGAGAATGCTGTATTTCTCTGGCTACACACGGGCTCTCGGAGATGTGGATGACGGCGACactgtaactgattacatggctcaagagagggagagaggaatCACCATCCAGTCAGCTGCTGTGACCTTTGACTGGAACCATCACAGGATTAACCTCATAGACACACCGGGCCATGTTGATTTTACTCTGGAGGTTGAGAGAGCTTTACGGGTGTTGGATGGAGCGGTCGCTGTGTTTGATGCTTCTGCTGGAGTAGAGGCTCAAACCATGACTGTGTGGCGGCAGgcagaaaaacatcaaatcccgtgtgtgtgtttcctaaACAAGATGGACAAGCCTGCAGCTAGCCTGAGGTACTCTTTAGACAGCATAAAGACTAAACTGAAGGCCAACCCCATTCTCCTTCAGATCCCCATTGGCTCAGGAAAGAGCTTTACCGGATTGGTGGACTTGATCGCTAGGCAGAAAATGACATGGCAGGGGAGCTCACTGACATATGACGGTGATGCTTTTGAAACCAGCGCCCTTCATCCCTCAGATGACCCAGATATGCTCCGGGCCGTCAGTGAGGCCAGGGCTACTTTGATAGAACAgGTAGCAGATCTAGATGATGATTTTGCGGAACTGGTGCTGGGACAGTACAGTGAAAACTTTGATGCAGTGCCTGCTGGGAAGTTGCAGGAGGCGCTGAGAAGAGTAACATTAGCTCGTAAGGGGGTGCCTGTGTTGTGTGGAAGCTCTCTGAAAAATAAAGGTGTTCAGCCTCTACTGGATGCCATTACTGCTTACCTTCCTGCCCCCAACGAGAGGAACCATGACCTGGTACGCTGGTATAAGGACGATCTGTGTGCGTTGGCATTCAAAGTGGTCCATGACAAACAGAGGGGTCCACTCGTGTTTGTTAGGATCTATTCAGGAAGCATGAAGGCTCAGTCAGCAGTTTACAACATCAGCAGGAACGGAACGGAAAGAATGAGCCGACTTCTCTTGCCTTTTGCCGATCAGCACGTAGAAATCCCTTCTTTATCTGCTGGAAACATCGCGCTCACGGTTGGACTCAAACAGaCGGTGACAGGCGACACCATCGTCTCCTCCAAAGCCTCTGCTGCAGCTGCGGTGCGGCGTGCTCAGAACGAAGCGGAGAGCAAGAGTAGCTCGCAAAAGGAGAGCAGCAGTCTGGCTCTTGCAGGGGTGGAGGTCCCCGAGCCCGTGTTCTTCTGCTCCATTGAACCTCCTTCTATGGCCAAACAAGCGGACCTGGAGCACGCGCTCAACTGCCTGCAGAGAGAAGACCCCAGCCTGAAAGTCAGAACAGACTCTGATTCTGGACAGATGATACTTTGTGGCATGGGAGAGCTGCACATTGAGATCATCCATGACCGTATTAAGAGAGAGTACAACATCGAAACTCACCTAGGACCCTTGCAGGTGGCCTACAGAGAAACCATCCTCCAATCAGCAGCTGCCACCGACACATTAGATCGCACTCTTGGAGACAAGAGGCATGTTGTTACAGTAGACCTTGCTGTCCATCCTCTGAAGAATGAGTCTAGCACTTCCTGTGATGTTACTTTTGAGGAGGACGTAAAAACTCAGCTTCCACCTGATGTCAAAGAAGCTGTGGAAAATGGAGTTCAGAGCGCCTACCTCCAAGGTCCTGTGCTTGGTTTTCCTGTAGAGGGAGTAAAGACGGTTATCCAGCACGTACGTTTGGAGCCTGGCACTTCTGCAGCCATGGTGGCAGCTTGCGTGTCCCGCTGCATGCTCAAGGCTCTGAAGCTGGCTGGGGTGCAGGTTTTGGAGCCGGTGATGGCTCTGGAAGTGACCGTAGGTGAAGAGTTTCTGAGTTCTGTGCTTGCAGATCTCTCCCAGCGACGCGGTACTATATGTGACATCCAAAGTCGACAGGAAAGCAAGGTTTTGCTGGCTACAGTACCTTTGGCTGAGATGATGGGCTACTCGACTGCACTGCGCACTTTGACCTCTGGGAATGCTACTTTTTCTCTGGAGCTGTCCAGCTATGAGCCCATGAACACTCAGGACCAGAATACACTGTTTAACAAGATGGCTGGACTGGCATAAAACGGGAACCTTCACCAACTCAACTGAACATTTATACAGGCCAGTTTTGATTTGTTCTATTATTGGATGCTCATATGGTCTAGAAGATGAATCTTTTGAAAACTAACCTACATATGGACATATTTTCTCAGCCCACATCCAGAGAtataattggattttttttctctgatggagagaaaaaaagcgcttgctgcttaatattaaaCTACATTACCAATTTTACAAGAA

Function

GO:

id name namespace
GO:0006184 obsolete GTP catabolic process biological_process
GO:0032790 ribosome disassembly biological_process
GO:0032543 mitochondrial translation biological_process
GO:0005739 mitochondrion cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K02355 fusA, GFM, EFG; elongation factor G

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49541 lncRNA downstream 76747 6178172 ~ 6178671 (-) True G33615
TU49538 lncRNA downstream 81305 6173847 ~ 6174113 (-) True G33612
TU49536 lncRNA downstream 83006 6172144 ~ 6172412 (-) True G33610
TU49446 lncRNA downstream 272615 5980317 ~ 5982803 (-) False G33549
TU49448 lncRNA downstream 274536 5974699 ~ 5980882 (-) True G33549
TU49626 lncRNA upstream 346147 6609449 ~ 6611442 (-) False G33681
TU49627 lncRNA upstream 346147 6609449 ~ 6611492 (-) True G33681
TU49624 lncRNA upstream 346179 6609481 ~ 6611442 (-) False G33681
TU49629 lncRNA upstream 348438 6611740 ~ 6613055 (-) True G33683
TU49721 lncRNA upstream 495607 6758909 ~ 6796851 (-) True G33738
XM_043239699.1 mRNA downstream 11600 6232266 ~ 6243818 (-) True enc1
XM_043239784.1 mRNA downstream 155717 6096157 ~ 6099701 (-) False ankra2
XM_043239783.1 mRNA downstream 155752 6096157 ~ 6099666 (-) True ankra2
XM_043238540.1 mRNA downstream 165862 6086801 ~ 6089556 (-) True foxd1
XM_043238326.1 mRNA downstream 345427 5898895 ~ 5909991 (-) True slc6a4b
XM_043238967.1 mRNA upstream 2435 6265737 ~ 6281395 (-) True aif1l
XM_043238966.1 mRNA upstream 19472 6282774 ~ 6343615 (-) True lamc3
XM_043238323.1 mRNA upstream 499834 6763136 ~ 6792026 (-) False ttll11
XM_043238322.1 mRNA upstream 499834 6763136 ~ 6792024 (-) True ttll11
XM_043238584.1 mRNA upstream 564813 6828115 ~ 6830827 (-) True LOC122344933
unassigned_transcript_954 other downstream 299047 5956299 ~ 5956371 (-) True trnak-uuu_104
XR_006251120.1 other downstream 824024 5431264 ~ 5431394 (-) True LOC122346225
TU48850 other downstream 1632360 4622490 ~ 4623058 (-) True G33175
TU48822 other downstream 2062337 4144927 ~ 4193081 (-) False LOC122346168
TU49743 other upstream 560869 6824171 ~ 6826182 (-) True G33758
XR_006251011.1 other upstream 660128 6923430 ~ 6943192 (-) True usp20
XR_006251012.1 other upstream 667570 6930872 ~ 6943203 (-) False usp20
XR_006251117.1 other upstream 858420 7121722 ~ 7121849 (-) True LOC122346221
XR_006251118.1 other upstream 859037 7122339 ~ 7122464 (-) True LOC122346223

Expression Profile