RNA id: XM_043239283.1


Basic Information

Item Value
RNA id XM_043239283.1
length 6662
RNA type mRNA
GC content 0.43
exon number 17
gene id rps6ka4
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 26769931 ~ 26789018 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTTCCGTAGCTGAAATGATCCTTACTACACTTTCTTCCAGGCATTTATCGTTCAATTCATTTCCTTTCCAAAACAAACGCATATTTTAACGCGAGCCAGGCACAACCGTACCCGGAAGGAAGGAGCGGAGGACTAAAATACGCCCGTTAAGCTTTAGCGAACCCGCTGTTAGGGACATTTTAACGTGATCTGTCATGGTTGATAGTTAGCACGTACGCTATCAGGGCATAGCTCGTTAGCAGAGCTAATATCGTTTTATTTGAAGTGTGTTTTTGGCAATGTAGCGGTAACGAGATCAGCTCAAACGCGAACAGCCGTACTTTGATGGACTGCGATCTTCACCGCAGTTGCGGACGACCTCACGACAGTTGTGTCGAAGTTGGAAATACGGAAATAACAGCCATTTATGGCCCACAATCATAATCAATCAGCTGCAGTTGAAAGTGTTAAAATACAGACGACCGTCGTCTCGTTTTGAAAGGTATTCGAGTGCGTGGCTGTGCGCGCGCCTATCAGAAGTGGAGATTAATATCTAGGTCGTGCTCGAAGATTAGTGTTCACAGCAGGATGTCAGAGGGATTTGTGAGCTGagataacaaaaacaaaaacatgtcattCTCCCTGTCATAACGTGCAAAATATCGTTTTATAGAAGAAACCCGCGCGTCGACGTTCGCAGCGCTTACTATAGATGTGCGCGCGCTGGAAAAGCAGGCTGTCAGAATCACTTTACTGATCAAAACGTCTAGAAATCAGAAAGATCATGTCAGGGGAAAGTAGTGGTAGTGGGGAGGACTCCGACCAAGAAACCCGCCGTAAAGTGTGCACTGTTAAACACGAGATCACTAATGctTACGGGAAAGTGTTCCTGGTCAGAAAAATTAGCGGCCATGATAAAGGCAAACTCTATGCCATGAAGGTTCTGAAGAAAGCGGCCATTGTTCAGAAGGCCAAGACCGCTGAACACACTAGAACCGAGCGGCAGGTACTGGAACACATCCGCCAGTCCCCCTTTCTGGTCACCCTCCATTACGCTTTTCAGACGCAAACCAAGCTGCATCTTATACTAGACTACGTGAGCGGAGGAGAGATGTTCACTCACCTGTATCAGAGAGATCATTTCTCCGAGGATGAGGTGAGGATCTACGTGGGAGAAATTATCCTGGCCCTGGAGCATCTGCACAAGCTTGGTATTGTGTACCGGGACATTAAGCTGGAGAACATCTTATTGGACAGCGATGGTCATGTGGTTCTGACAGACTTTGGGCTGAGTAAGGAGTTTCTAGAAGAGGagAAAGAGAGGACTTACTCATTCTGTGGCACTATAGAGTACATGGCACCAGAGATCATCAGAGGGAAGGCTGGCCATGGCAAGGCAGTGGACTGGTGGAGTTTGGGGATTCTTATGTTTGAACTGTTGACGGGAGCGTCTCCGTTCACtctggagggagagagaaattCCCAGAGTGAGGTGTCCAAGCGCATCCTGCGCTGTGAGCCTCCATTCCCCTCCATCATTGGCCCCTTGGCTCAGGATCTCCTGAGAAAGTTACTGGTGAAGGACCCTCATAAAAGACTGGGCTCCGGTCCCAGAGGAGCTGAGGAGATTAAGTCTCATCCTTTCTTTAAGGGTTTAAACTGGTCCGACTTGTCTGAGAAAAAGCTTCAGAGTCCATTCCGGCCAGAACTGCGTAATGAGCTGGACGTGGGCAACTTTGCCGAGGAGTTTACAGGAATGGAGCCGGTCTATTCTCCTGCCAGCACACCGCCTAGTACAGACCGTCTTTTTCAGGGCTACTCTTTTGTGGCTCCTTCGATCTTGTTCAATAAGAACGTGGTGATGGCGGACGTCCTGGAAGCTCATGTGAATGTTGACAGGCCCGGCTCTGCTACAGTTCATCGCAGCGCTATGCTGAAGgaCTCACAGTTTTTTCACCACTATGAGCTTTGCCTGCAGGGGGCTCCGCTGGGAGAGGGTAGTTTTTCTGTCTGCAGGAAATGCAAACACAGGCAAAGTGGCCAGGAGTATGCTGTAAAAATCATCAGTAGAAGGATGGAGGCCATGACTCAAAAAGAGATAGCGGCACTACGCCAGTGTGAATCTCACCCCAACATCGTCACGCTCCACGAGGTCTATACCGATCAGTATCATACGTATCTGGTCATGGAGTTGTTGCGTGGTGGAGAGCTGTTAGAGCGAATAAGGAAAAAGAAGATGTTTGCAGAATGGGAGGCCAGTCAGCTAATGAAGAGTCTGGTGTCTGCGGTCAGCTACATGCATGAGGCTGGAGTCGTGCACAGAGATCTCAAACCAGAGAACGTGCTGTTTGCCGACGAGTCGGATGACTCCGTGCTGAAGGTGATTGATTTTGGATTCGCGCGGTTGTTTCCAGCGGGGAGCGGCAGCGCGCCCCTGCAGACCCCCTGCTTCACCCTGCAGTATGCTGCTCCGGAGCTCTTCCACAGCTCGGGATATGACCAGGCCTGCGACCTCTGGAGCCTCGGAGTAATCCTGTACACCATGCTGTCTGGTCAAGTTCCATTCCAGAGTGAGAAGAAAGGAATGACCTCGTCGCATGCAGCTGACATCATGCACAAAATCAAGGAGGGAGATTTCTCATTGGATGGAGAAGCCTGGAAGGGTGTTTCTGAAGAGGCCAAAGATTTAGTGAGAGGTTTGTTAACCGTAGATCCTGAGCGACGGCTGAAGCTCTCGGCTCTGAAAGAGAACGCATGGCTTCAGGGAGGTGGCGTTATGTCCTCCACCCCTCTCTGCACCCCTGATGTTTTGGAGTCCACCGGCCCAACTGTCCGTACCTACGTCAATGCCACCTACAAGGCATTTAACCGGGGGAAGCGCGAGGGCTTCTTCCTTAAAAGCGTTGATAATGCGCCACTAGCAAAACGTCGGAAGATGAAAATGACCAGCACCGGTGTGGAGACGAGACGCagctcatcctcctcctcctcttcctcctcttcctcatccgcTTCCCATTCCAAGACGCAGAATTGCCAATCTTTGAATCCCCACCAGGACCCCAAACTGTGACAGCTCCGTTTGACTGAAAAGCTGCTTTGACGCGGTGAGAGAATGTATTGCAAAAGCATTACAGGGTGAAAAagacctataaaaaaaaagactacgCAAAATAATAGAACCTTGATATTGCAACAAATTCAACATTTATTGAAGTCTCAGCAGGAGTAAAGCCTTGTGCTGACAAGATCAACAGATCAACTTGGATTTTCAAGTCATTTGGAGGaaagaggaatttttttatCAAGGCGGCTTTCTGTAAACACAATGCCAAGGAAATGATCTACATTATAAAATAGACTCCCAATCGTGTTTTCTTTGTACTTTCTTTTCGTTGTTTGAGACGGtagacattttaatgaatgtaaaaatgttcatgtGGTATGTACCCACTTTTAGAAAAATCTTTTAACTGTAAGAGGTGAGCGAAACACGTGAAACTGAGATCAGGGAAAGCTGAAACGTTAGGGAGTAGTGGACAAGAAAGCCACAAGAGAGCAAAGCCATACGTGAGAATTAGAGTGGacttctattttaatgtattttaatgatcCACTGAGCAAAGCTTTATGTGAATCATGTacagtttatttacatatcaCTACTTTCAGAAGTTTTCTCGATGTTTGCATGgctaaagtattttaaatgttttacattttttaaaagttgaccTATGAAGTCAGACCACACGAAGTCTCTGAATCACCAGTTAGAAATAGATCCTACCCACGCTTTTGGGTGAATCTCACAGACACATCATTTGTATTTTGCCAAAGATATATTTTGAGAACAATTAATTGTGGGGGGGGGGACCCAACAGTAATTCAGATTTCttagttttaattcaaattgGCACAAATACAGCAATATATAGACTACTTACAACATTAAACTACTTGCAgtaagagttcatttgcaaaattcGATAAACGCCACTTAAAATTTCCGTGCATTATTCTCCACGTATCTGAACTGTAAACATGACAGTATTGTCCACTTGCCACCTTGCGAAAGCATCACGTTACAGTGGTGAGGTGTGTATCGCGTAAACGTAATCACATCCATGCGCTCTACAAAAATTTAAACTTTCGGTAaactttttgtaaatgaatagtAACAACCCAACTGCGGTTTGATCGATATTACTTGAAATGCgtaataaaaaagtgatttatgagTTGGCTGTTTTTGCAAACGAACTCATCATGCATACGTTAATAATGtggggaaaatatatatatataaaaatcaaatactACATCCAGAAATTCTGTAAAATTCACCCAATCTTTTTACCTTGTGTCTTATTGCTAGTTATCGCGTGAAGTGTGTGGAGATCACTTTATATATATCATCACTAACTTACTTGACCGGTTTGGATATACGAATCTCTGGCTTCGAGAACCAGATGTGGCATTTGCTTTTATCGGTGTACTTGAAATGTCGTGCTTCGTTGATGGTGTGCACAGTCTTGTCTCTTCTACTGAGCTGAGGGATCCCAAAATCCACTGCCTGTTCTACTCTGCAATCCGTCGACCGTAAGGGCTGAGGTTCACAAGACAGCAATCGATCCCTCACGTTCTTAAGGGCTTTCACAATCGCACATCCACGCTGTAATCGGGTGACCCTCTCTTGCACTGTGAAGATGGCACTGGCGTCCCTTcctattttccttttttattaacCGTCTTCACGGCCGTTAGTCTTGCAATATTTTGACTTGATGTACAAGCGTTCAGACATTTTAGTGCGGAGTCTATCTGCTGTATGTGCTGTGTAAATCCACCGAACGACGCTTAGGATTCAGGCGGCGTGTTGAGCTGACGCTTTTATTAAGATGCAAACAGGTGTCGAGGCCCAGTAAAACACCTCCAGCAATGTTATATAAActctgcttttcttttaagAGGTGTGAAGCTGGCAGGTATGAACGTTTTAACAGTCCAACGGATTGTTTGGCACTGCTTTTATTGAAATAACGTATTCGTCATTTGTTTGTGCCAAAATAATCAGTTAATGGAGGGTAATGTCTGTAATATAGTTTTGCACACAAGATGCACTAGTctgggggtttttttaatgcCTTTATCGTTCACAAGCGGCGCTTTTGTCGGCTTCACATCGATGGAAGGCGAAACTGTTTGTGAAAAGACTGGAACAAATTCAGCACATTCTGATACGTATCATCAAGGGGTTCAAACGCAGATTTTCTGCAATCAAAGTATCTTTCAGATGTAATCAGCACAGTTACATCATGCCGTGTGACGAAAATAGGTTTGACTTCAGGccttttaaaagaatagttcaccccccaaaaaaaaggaaaaattgcCTGAAATCCAGGTCATCCGAGATGtagaggagttttttttttcatcggaacagatttggGGTAATCGATGGACCGGAGTTGTGTgaattattgatgtttttatcagccgtttagATTCTCATTCCGACGAGAAACCAAATCATCTCCATCTTGGGTGGCTTGAaaatttacagcattttttttttaggtgaactgttccttgaGTGATTTTTACACTATCAAGTAAATCCGAATAATCTTGATTCCTTTTGCCGCACAGGTTTGTTAATGTCAATGTATTTGGGGCTTTAAAAACggtaattgttttatttatttcttttaacttgctctttatatctttattcaCAGTGTTATGGCTTTTTGCTTCATGTAGTTTAgttcttttgttgtttgtataATTCGTCGGTAAGAACAAGTCCTCTGCTCTTATTAGATCATGCACTGCTTTTTTTATGTGGAAGTTCTACAAATGTAGTTTTGATCGCAAACATTTTACTAGACAGGATTTGACGTCTAGAGTTTAAGGGTGAGCTTGCCGTGTCTCTATGGCTTGAGTGTGGTCTGCGTATATCATGTTATGTTGGGGTTctgatttgcatgttttttcgtttttcttttcttttcttgataACTTAATGTTCTGTCTCTgccaaaagaaatgttttgtaataaaaaaagagaattataCCGAAATGAAATACACTGTTATAAGAATAAATGAGATGCATTGTTGTGCATTGAGGAAATTGCTGAACCcaaagcataaaatataaaaatatactacaCTCTTAACATTCTGTTCCCTTCTTAAGccagtaacatttttatttttgtttttatgtttatttttttatattgtctttGGTGTTGCTTTGATAGCTCCATTTCATTATCTTTGAGTGttgttttaaagggatattttaTCATCATCCACTCGCCTGGATCAACAACACACAAAGTACGGAAGTGAATGTTGGcacaatctaaaataaatgaggaaatgagaaatattatttGTCTCTGGCACCTCCACAGCTCCGATCCTTTGCTCTGAACACCTTATTGCAGCTTCGGGGGTGTTTGAGACCAGAGCACGCAGCCACAGGCTCTCGAAGAACCGTAATCCATCTTTGATGTGTTTGAGGCCAGCTGAGAATGTCACAATGTTAAGCAAAGGCACAGTTCTcacgttttgtttttagaatCAGCTAATGCAGTTTCCAGcacactttaaatgtattttgttgtatatgtgatggaaaagattaaaaatatttgtaaaaaata

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250952.1 lncRNA downstream 396109 26372619 ~ 26373822 (-) True LOC122344941
TU58531 lncRNA downstream 616228 26153465 ~ 26153703 (-) True G39585
TU58525 lncRNA downstream 650848 26118474 ~ 26119083 (-) True G39579
TU58520 lncRNA downstream 986340 25782979 ~ 25783591 (-) True G39574
TU58518 lncRNA downstream 1041461 25728237 ~ 25728470 (-) True G39572
TU58747 lncRNA upstream 87572 26876590 ~ 26883175 (-) True G39712
TU58749 lncRNA upstream 87572 26876590 ~ 26883175 (-) False G39712
TU58799 lncRNA upstream 292983 27082001 ~ 27084786 (-) True G39738
TU58800 lncRNA upstream 310797 27099815 ~ 27107385 (-) True LOC122345426
XR_006250928.1 lncRNA upstream 326949 27115967 ~ 27146962 (-) True LOC122344810
XM_043238198.1 mRNA downstream 50185 26673097 ~ 26719746 (-) False flrt1a
XM_043238196.1 mRNA downstream 50185 26673097 ~ 26719746 (-) True flrt1a
XM_043238542.1 mRNA downstream 122396 26639154 ~ 26647535 (-) True stip1
XM_043238541.1 mRNA downstream 132066 26626193 ~ 26637865 (-) True im:7154036
XM_043238547.1 mRNA downstream 144926 26615142 ~ 26625005 (-) False kat5b
XM_043238940.1 mRNA upstream 7237 26796255 ~ 26800046 (-) True rom1a
XM_043238941.1 mRNA upstream 13366 26802384 ~ 26809937 (-) True si:dkey-273o13.3
XM_043238366.1 mRNA upstream 27902 26816920 ~ 26820637 (-) True cdca5
XM_043239158.1 mRNA upstream 32280 26821298 ~ 26851848 (-) False clip1a
XM_043239159.1 mRNA upstream 32280 26821298 ~ 26851848 (-) False clip1a
unassigned_transcript_1081 other downstream 658529 26111332 ~ 26111402 (-) True trnag-gcc_64
unassigned_transcript_1080 other downstream 660361 26109500 ~ 26109570 (-) True trnag-gcc_63
unassigned_transcript_1079 other downstream 668522 26101339 ~ 26101409 (-) True trnag-gcc_62
unassigned_transcript_1078 other downstream 677935 26091926 ~ 26091996 (-) True trnag-gcc_61
unassigned_transcript_1077 other downstream 680143 26089718 ~ 26089788 (-) True trnag-gcc_60
TU59072 other upstream 593903 27382921 ~ 27398720 (-) True isca1
TU59237 other upstream 1100105 27889123 ~ 27895454 (-) True LOC122344874
TU59335 other upstream 1466810 28255828 ~ 28264704 (-) True G40080
TU59455 other upstream 2671567 29460585 ~ 29490204 (-) True G40182
XR_006251000.1 other upstream 2827981 29616999 ~ 29655061 (-) False eng

Expression Profile