RNA id: XM_043239292.1


Basic Information

Item Value
RNA id XM_043239292.1
length 3543
RNA type mRNA
GC content 0.42
exon number 12
gene id traf2b
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 24633302 ~ 24652541 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCGTCCTTCCGTTTGAGAGACgtcctgtgtgttttatggACAATGCGGCTTGCCATCGTGGCGTTATCTATAGTGTCGTGTCTATGATGACGCACACACGTACTGGACTGACACGATCACTGACGGTTAGAAGTAACCCACAGTATTTGATGATCAGCACTTCTAGCACTGTGGGTAAATGGAAGGCTATGGCACGATCTTTACCTTCTTCATTGGACTCCACCTTACCTGGGATATCTCGAGAGGTGCTGTCTGTGTCCATGGAACCAAAATATCAATGCCAGCAGTGCAAAGAGATTCTTAGGAAACCTTTCCAAGCACAGTGTGGACATCGCTTCTGTGTGTTCTGTTTCAAACAACTCACCAGGGTTCTACATCAGTCTGGATATACTATCTTCACTTACCTCTGTGGATATGTCCTAGGATATTTTCAATCTTTGCTCGGGGCCCACACCCTGCGAAGCCTGCCGTGCCGAGGGTATATTTGAAGAGACAACGTCTATGCTCAATATTACAGTGGCATTTCCTGATAATGCAGCACGAAGGGAAATTGATAGTTTACCAGCCAAATGCCCAAACGATGGATGTAGCTGGTCTGGAACATTGAAAGAGTATGAGGGTCAGCACGAAGGTCGTTGTGACTTTGAACGTGTAAAATGTGAAGCATGTCAAGCGCTCATCTTGGTCAGTGAGAAAGAACGCCACAATGAGCGGGAATGCGAGGCCAGAACCCTCAACTGCAAATACTGCAAGGTCACATTCAACTTCAAGGAAATTAAGGCTCATGATGAAATATGTCAGAAATTCCCCATGCAATGCAAAGACTGCGGTAAAAAGAAAATCCCCAGAGAGAAGTTTCAAGAACACATCAAGTCTTGCGCGAAGTCTAAGTCAGCATGCCAGTTTAGTGAAATTGGCTGCAGGGCCGTGGTTGACAATGGTAAGCAGCAGGAGCATGAGCAGACCAGCATGACGGATCATCTGCGTCTCATGCTAGCTGTGCTGTCCTCTGTGCGCCTGCGGGCCGAGGGCGCCGGAGAGTGGCAGGAAGATTCTGGACTGGGATTGTACCGCGGACCTGAGGATGCATCTCCAGCCGGGGCTCACGCTGCCGGCCATCATGCAGGGAGAGGAGGCAGTCCTGGTGTGCAGCAGAAAGTCACGGCGTTGGAGAACATAGTGTGTGTGCTGAACAGAGAGGTGGAGCGCTCGGCCCTCACCCTGGAGGCACTGTCCCGTCAACATCGACTAGACCAGGAGAAGATAGAGAACTTGTCAAACAAGGTGCGTCAGCTTGAACGGACTTTAACAATGCGAGATCTTCAGTTAGCAGAGTCGGAGCAGTCCTTGCGGGAGCTTCAGTTTTGCACATACGATGGAGTTTTCATTTGGAAAATAGCAGACTTCTCACGTCGCAGACAAGACGCTGTGGGCGGCCGGGCACCTGCCATGTTCTCACCTGcGTTCTACTCCAGTAAATATGGCTATAAGATGTGTCTGAGACTCTACCTGAACGGTGACGGCACAGGCCGGGGCACTcatctttctctgttttttgtGGTCATGAGGGGCAAATACGATGCACTGCTGAAGTGGCCCTTTAGCCAGAAGGTGACACTGATGCTGTTGGACCAGAACAACCGAGAGCACATCATTGATGCCTTCAGGCCTGACGTGAGCTCCACATCCTTCCAGAGACCCATCAGTGAGATGAACATAGCCAGCGGTTGTCCTCTCTTCTGTCCTCTGGCCAAGCTGGCAGGCAAAAGCTCATATCTGAGAGATGACACCATATTTATTAAAGCCATAGTCGACCTCACTGGCTTATAAAGACCTGGAATTACTCCTAGTAATAATTGAtgatattattgttgttattattattatatctcaGCTGCGGAAGCCAAACAAATAACACGTATAATATAAAcgataatataaatgataataaaataatatttctatattgattttaagaaataaattgagttatagtaatattattatgtgCACGTATGGAGTGGATTTGCTAAAACAGACTTCCATACCAACAATTGCACTAGTTTgatataattcaatatttaaaacaaaataattatttattataatacgtatttatataatatacatgagtacacatattttaatattttacctaTACCTACCTGTAGTATTGTATGCGATACAGAAATGACTTATATGTTCCGTGACCTTAAAGGATTACttcaccacaaaataaaaatgtgattcccaacccataaaagctttgttcatcttcagggCACAAGTTAAGATATTTCCGATGAAAAGCAGGAGGCTTGTAACTGTCCTATTGACCGCCGAACTGTCCCGACTGTCAGTGTGCAGAAAAGTACGGAAGACGTCGTTGAATCAGTCGCTCAGCCTCAAcgttatgaagctatgagaataaaAGATGCTGTTTGTACACACTGTACAACATACAAAACGGATCTTTCCATTACATACACAGAACTGTGTACACAGGACGAGGCCCAAAATGGTTTTACAGTGATGTTATGTGTTCAATCGCCAAGTAAAGTAGTTCTTATAGCTTAcaaaccactgatggcagatgaagcATTCAGACGATGTCTTTCACACTGTTCTACACCTTGACCGTGGCggttgtttggcagtcaatggcaCAGTCACTAGCCTCCCATTATTCATCCAGAGGATCTTTAATTATGTTCAGAAGACCTACAAAGCTTTCAGGGGTTTGGAACCACATGGACGTAAGTGAATACTTTTGGgctggagtaaccctttaaggtTCGTCTGTTTTATGCATATACTCTACTTGTGGTATCATTTTTCATGCCgttaaataactaaatgcatCTTTTGCTGGAAGTATAGTGTAAGCATATAAATAGCTACATGTAAGTTACTGGTCTGCTGTTTTTAGTCGACTAACTTGACTAGCTTAATAATAGAGTACCTGTTATAAAAGCTGTGAGAATCGTTCAGCCTATAGGAACTAGTAACTGCTTGCTCTTCTAAATAAGCCCTTTGATACAGCATGTGCACGAGGCTataaaaatggttatttcaGCAATTAGAAACCTTAGCAGGAGACTACACGCACTCTAGAATCAAACCTGATGATGATAAATGAGCCCACTTGAGCGTTTAATGAATAGAagaataagatccaccacaaaTCCTTCTAAAAGGAccaccatttttttctgtattatcaCAGCAAGCGAGGTTAGGGGTCCTGCTGGTGCATAGATAATAATCCTTGTTAGTGTtggaaacatgtttttttttttgatgatctGGTATGTGTCCTTTcaaaatgaatgtgttatattatttaGCTATCACTTGTTGATTTGGATTTCATCTAGTGTTTGTAGCGATATTAATCTACCCTTTATTGCATCGCATTTtaatcacaaaatatttaattatgttcaTAATTCATATACAAGTCCAAGTCATATATAAGGGCAATCTATTAGTGtacaattctattttattttgtaacatcaaTAAACGCAATTTCTTCTCTAA

Function

GO:

id name namespace
GO:0042981 regulation of apoptotic process biological_process
GO:0007250 activation of NF-kappaB-inducing kinase activity biological_process
GO:0046328 regulation of JNK cascade biological_process
GO:0033209 tumor necrosis factor-mediated signaling pathway biological_process
GO:0051865 protein autoubiquitination biological_process
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250987.1 lncRNA downstream 8424 24623559 ~ 24624878 (-) True LOC122345299
TU58207 lncRNA downstream 8450 24623853 ~ 24624852 (-) False LOC122345299
TU58194 lncRNA downstream 111281 24521562 ~ 24522021 (-) True G39298
TU58192 lncRNA downstream 112915 24519667 ~ 24520387 (-) True G39296
TU58150 lncRNA downstream 142510 24414900 ~ 24490792 (-) False G39274
TU58247 lncRNA upstream 81077 24730212 ~ 24730391 (-) True G39337
TU58251 lncRNA upstream 82504 24731639 ~ 24732075 (-) True G39341
TU58240 lncRNA upstream 97537 24746672 ~ 24748576 (-) True naa38
TU58257 lncRNA upstream 103947 24753082 ~ 24753322 (-) True G39347
TU58223 lncRNA upstream 105069 24754204 ~ 24758627 (-) True LOC122345923
XM_043239298.1 mRNA downstream 16386 24615358 ~ 24616916 (-) False tmem203
XM_043239297.1 mRNA downstream 16458 24615358 ~ 24616844 (-) True tmem203
XM_043239195.1 mRNA downstream 19559 24597087 ~ 24613743 (-) False tprn
XM_043239194.1 mRNA downstream 19572 24597087 ~ 24613730 (-) True tprn
XM_043239193.1 mRNA downstream 39186 24587724 ~ 24594116 (-) True anapc2
XM_043238393.1 mRNA upstream 7692 24656827 ~ 24661600 (-) True bspry
XM_043239693.1 mRNA upstream 36211 24685346 ~ 24690190 (-) True rangrf
XM_043239694.1 mRNA upstream 36211 24685346 ~ 24690134 (-) False rangrf
XM_043240278.1 mRNA upstream 65308 24714443 ~ 24723909 (-) True LOC122345804
XM_043240471.1 mRNA upstream 97896 24747031 ~ 24748610 (-) False naa38
XR_006250980.1 other downstream 39186 24588028 ~ 24594116 (-) False anapc2
TU57904 other downstream 432806 24197705 ~ 24200496 (-) True G39113
TU57720 other downstream 745622 23887303 ~ 23887680 (-) True G38973
TU57636 other downstream 876714 23751880 ~ 23756588 (-) True G38917
TU57575 other downstream 1028569 23602244 ~ 23604733 (-) False LOC122345364
unassigned_transcript_960 other upstream 268685 24917820 ~ 24917893 (-) True trnan-guu_1
unassigned_transcript_961 other upstream 268870 24918005 ~ 24918076 (-) True trnak-cuu_4
unassigned_transcript_962 other upstream 275013 24924148 ~ 24924220 (-) True trnak-cuu_5
unassigned_transcript_963 other upstream 277845 24926980 ~ 24927051 (-) True trnak-cuu_6
unassigned_transcript_964 other upstream 283771 24932906 ~ 24932978 (-) True trnak-cuu_7

Expression Profile