RNA id: XM_043239345.1


Basic Information

Item Value
RNA id XM_043239345.1
length 3139
RNA type mRNA
GC content 0.46
exon number 18
gene id LOC122345314
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 23394164 ~ 23411152 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCACATCTTCTCTTAACAGCAGTAACAATGCAGACCTAAGCAGCACAGCCCGTTGAacgagagagagcaagagagagagagagacagaaagagagagagagagagagagaaagtgcgTGCCTTTCGAGCAAGATGGGGTTCGGCCAGGACCTGCGCAACTCCCACGAGGGTCTGGTGAAGCTGCAGGACTGGGAGCTGAAGCTGCTGGAGACGGTGAAGCGCTTCATGACCCTGCGGGTGAAGAGCGATAAGGAATATGCATCTCTCCTGCTCAACATCAGTCAGCAGGTGGACAAGCATGACAACTCCTCTCAGATTAACTATGTCAGTACGGTCTCCAAGTCGTGGACTCACATGGTTCAGCAGACGGAGCAGTTGAGCAAGATTATGAAGTGCCACGCTGAGGAGCTCAACTCAGGACCTCTCCACCGACTCACAATGATGATCAAAGACAAGCAGCAGGTGAAGAAGAGTTACCAGAGCCTCCACCAGCAGATCGAGTCGGAGATGCACAAGGTAACTAAAAACGATCTTGAGAAGTTGAAATGCACCTACAGGCAGTTAACTAAGGACGCTGTTTTAGCAAGAGACAAATACAAGGAGGCTGTTGTAAAAGGCAAGGAGACTGAGAAAGCTCGTGAGCGTTACGACAAAGCCACCATGAAACTGCATAACCTGCACAACCAGTATGTGCTAGCGGTGAAAAGCGCACAGCTGCATCAGGAGCACTATCACGAGACTGCACTGCCTCTGCTGCTGGACTCCCTGCAGAAGATGCAGGAGGAGATGATCAATGCACTTAAGGGTATTCTGGAGGAGTACAGTGAAATCACCAGCCTGTTAACAGATGAAATAGTAAAGGTCCACAAAGAAATACACACTTCCATCGACCAAATCGATCCACTGTCAGAGTATGACAACTTCATCGAAGTTTATAAATCACCAGAAGCCAAAGAACCAAATGTAGAATTTGATGCAACGCTATTAGAAGAAACCGAGAATCTTCAAGCAAATGAGATTCTGTGGAATAACTTGACAGCAGACAGTTTACAAGCAATGCTGAAGTCCAGCTCAGAGGAGCTGCTCCTAACCCAGCAGAGTCTACGCAGCAAAGAGGAGCTCATGCTGGACCTGGAGAACAAAATCGAGGAATCTACCAAAACCTATGAGAAGAAATCCGACGTGGTGTTGTTACTCAGTCAGAAGCAGTCTCTGGAGGAGTTGAGACAGACGGTCCAGCTGCTGCGCTGTTCGGAGGCCAAACTGATGGCACAGAGAGAACTACTAGAACAGAAGATGCAAGAGAACGAGGGCAAAGAACCTCCGCCTGTCGTCAATTATGAAGAGGATGCCCGCTCAGTCAACTCAATGGACAAAAGCAAAGACAAGGTATCGAAATTCGACACCCTCAGACACTCCATCGCTGGAATCATCCGCTCGCCCAAGTCTGTGCTTGGCTCTTCATCATTTTTTGATGTGATACCCACCAGTGAGAAACCGCTGGGCGAGCAAGAGTGGTATCACGGGGCCATTCCCAGGACAGAGGCCCAGGAGCTGCTGAAACAGCAGGGAGACTTCCTGGTGCGCGAGAGCCACGGCAAACCTGGAGAATATGTGCTGTCTGTGTTCTCAGATGCCCAGCGCAGACATTTCATCATTCAGTTTGCTGATAACCAGTACAGATTTGAAGGCACTGGCTTCCCCACCATCCCACAGCTCATAGAGCATCATTACACAACTAAGCAAGTCATCACCAAGAAATCTGGGGTCGTGCTCCTGAACCCTGTCATAAAGGATAAGAAATGGATTCTCAATCACGAGGATGTCATTCTCGGAGAACTCCTCGGGAAAGGAAATTTTGGCGAGGTTTTCAGAGGAACGCTGCGAGATAAAACTCCGGTGGCTGTGAAAACTTGTAAGGAAGATCTCCCACAAGACCTCAAGATAAAGTTCCTCTCAGAAGCCAGGATCCTGAAGCAGTATGATCACCCCAACATTGTGAAGTTAATAGGCGTCTGTACCCAACGGCAGCCCATTTACATAGTAATGGAGCTCGTACCAGGCGGGGACTTTTTATCATTCTTAAGGAAGAAAAAAGAGGACCTCAAGACAAAGCAACTGGTAAAATTTGCATTAGACGCTGCTGCCGGAATGGCGTACCTGGAGCTGAAGAACTGCATACACAGAGATCTGGCTGCCCGTAACTGTCTCGTGGGTGAGGAGAGCGTGGTGAAGATCAGTGATTTCGGTATGTCTCGTCAGGAGCAGGACGGGGTGTATTCTGCTACAGGAGGAATGAAGCAGATCCCAGTTAAATGGACCGCACCAGAGGCCCTCAATTATGGGCGATACACCACCGAGAGCGACGTGTGGAGCTTCGGAGTGCTGCTGTGGGAGACCTTCTCCAGAGGAGTCACGCCGTACACCGTACCCCTTAACATGAATAACCAACAGACCAGAGACGAGGTGGAGAAAGgGTATCGCATGCCGGCCCCAAATAACTGTCCGGACGAAATCTACGCCCTCATGTGTCAGTGCTGGCAGTACGACCCACGAAACCGACCCTCGTTTCGCAAACTAAAGGCGGATCTGTATGCTTTATGTCAGTAAAATCACGTGTGCAGCTCGTCTTATGATGAGGCCAAagcaaagatttatttttttaatttgtgtgccACATAAAAGAACATTATAATTAAGAATATTCGAttttatagaaatgttttgaatgctGTGCAGTGTggtccaaatgtttttttttatttgtgacatcctgatgtttaaataataaataaattattttttggacTTGACGTGCATGATAGCATAACATGTACATTTACCCTTTACAGTATAaagaaattgtaaataaatctattaataattattaataatagcaaCCTCTTGTTTAGTGATCATTTAAATTGATTAGTCTAAATGTCAGAAacgtactgtaaataaatgtagtaatCATTAGcgataataatatttaaaatgaccaaaaattcatttataaaattaaaaattacaaaaaagatcACAAGCATCACATGAcgttgaagactggagtgatgagctttacatcactgaaataaattacatttgaaaacattttaaaataaaaaaaatgtaaaatgtg

Function

GO:

id name namespace
GO:0018108 peptidyl-tyrosine phosphorylation biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004715 non-membrane spanning protein tyrosine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57397 lncRNA downstream 36017 23357574 ~ 23358147 (-) True G38769
TU57395 lncRNA downstream 48367 23345589 ~ 23345797 (-) True G38767
TU57383 lncRNA downstream 262165 23127219 ~ 23131999 (-) False nrgna
TU57350 lncRNA downstream 356694 23036457 ~ 23037470 (-) True G38747
TU57216 lncRNA downstream 517727 22873971 ~ 22876437 (-) True G38658
XR_006250995.1 lncRNA upstream 191085 23602236 ~ 23605748 (-) True LOC122345364
TU57600 lncRNA upstream 255690 23666841 ~ 23669869 (-) True G38892
TU57729 lncRNA upstream 491468 23902619 ~ 23902898 (-) True G38982
TU57791 lncRNA upstream 566025 23977176 ~ 23978527 (-) True G39034
TU57774 lncRNA upstream 568513 23979664 ~ 23997739 (-) False aatf
XM_043240775.1 mRNA downstream 262156 23127212 ~ 23132008 (-) True nrgna
XM_043238281.1 mRNA downstream 275020 23105929 ~ 23119144 (-) True hepacamb
XM_043238177.1 mRNA downstream 289189 23098840 ~ 23104975 (-) True ccdc15
XM_043238178.1 mRNA downstream 289189 23100129 ~ 23104975 (-) False ccdc15
XM_043239956.1 mRNA downstream 296905 23086295 ~ 23097259 (-) True slc37a2
XM_043239435.1 mRNA upstream 35546 23446697 ~ 23448138 (-) True btg4
XM_043239361.1 mRNA upstream 83987 23495138 ~ 23505743 (-) True ppp2r1ba
XM_043239354.1 mRNA upstream 99027 23510178 ~ 23518148 (-) True alg9
XM_043239355.1 mRNA upstream 99027 23510178 ~ 23518147 (-) False alg9
XM_043239403.1 mRNA upstream 108109 23519260 ~ 23523750 (-) True fdxacb1
XR_006251119.1 other downstream 1354130 22039901 ~ 22040034 (-) True LOC122346224
XR_006251116.1 other downstream 1434280 21959785 ~ 21959884 (-) True LOC122346220
XR_006250934.1 other downstream 1510142 21878156 ~ 21884022 (-) False LOC122344823
XR_006250933.1 other downstream 1510142 21878156 ~ 21884022 (-) False LOC122344823
XR_006251046.1 other downstream 1568059 21809013 ~ 21826105 (-) False akap10
TU57575 other upstream 191093 23602244 ~ 23604733 (-) False LOC122345364
TU57636 other upstream 340729 23751880 ~ 23756588 (-) True G38917
TU57720 other upstream 476152 23887303 ~ 23887680 (-) True G38973
TU57904 other upstream 786554 24197705 ~ 24200496 (-) True G39113
XR_006250980.1 other upstream 1176877 24588028 ~ 24594116 (-) False anapc2

Expression Profile