RNA id: XM_043239350.1


Basic Information

Item Value
RNA id XM_043239350.1
length 2294
RNA type mRNA
GC content 0.40
exon number 3
gene id cd180
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 24406995 ~ 24409513 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCTATTTTACCTATATATTTGAATGAAGAGGAGacacttttctctttttgtcctGTACACTATGGAGAAGCATTTTGTTTTCTACACGTTATGTTACACTATTCTGATTTACCTCTTACCGCATAATGAAGCAACACCATGGGCTAGGAGACAGTGTCAACAGATAGCAAATGGCTATGATTGTAGTGATATGGACCTACAAGTCATTCCGGATGAGATACCAAATTCTGtccaaatttttaaatttagcttCAACTATCTTCCTGCCCTATACAAGTTTACTTTTCAGAGGCTAACAAGCTTGATTTATTTAGACCTGACAAGATGTGGCATCACTTTCGTgtatgaagacatttttaaatatcagtctGACTTGGAAGCCCTTATCCTAATAGGAAACCCACTTGTGTTTAttgcagaaaaagctttttctggaCCTCTAGCGCTCAAATATCTAAGCCTTGCTCAATCAAATATACAAAGCCTATCAGACATCCCGTCAGATAATCTTGCATATCTGGAAGTTCTGGACCTTGGGGGAAGTGAAATTCGCTCACTAGACGGACTAAGCACTTTCAACTGGCAAAACATGCACCGCCTACGGATGGACATGAACTCCATTGAGCGGATAAGAGAAGATGATTTAGCACCACTCCGCAATGTGCACGGGATAAGCGTCAGCTTTAAAGGGAACGATTTTGTCGATATTGAACCAGGTGCGTTTAAGTCACTGAATTTGAGTAGTCTTGATTTCAGTGGCTGTCTCAGCAAGATGACCTTCTCCTCTCTACTGAAAGGGCTTGAAGGTCTTAATAGCAACAGACTCAACCTGGGATTGTATGAAACCGATCCAAAAGTGCACATACCATCTGCTGCACTACAGTCTTTGTGCAAGGTCTTCGTTACTGAGCTGGATTTCCAGCTTCAGCATTTCTTAGACCCGAATAATTTTCCATTTGATTGCCTTAAAGGGCTTAAAAAGCTTGACCTTACTAAAGCCCACCTGGATTTACTGCAGTTCAACATGACTGGCCCATCTACATTGTCCTATCTGGTGCTAGATGAGAACCGCTTTAACGATGTCTGCAACATCAACACCAGAAACTTCCCCTTGCTTACGTACTTGTCTGTGAGCGGGAACTCAAAGCAACTCAATTTTAGCAGCAAATGCTTGGAGAGTCTTGGAAACCTTGAAGAGCTGGATCTCAGTCTTAGTTTAGTAAATCCCAGGGGACCCTGTTGCAATGACCAGCTGTTTGGTCTGAGAGAACTGAAGCTCCTCAATCTCAGCTATGGCTCACAAATGTTGTGGAGTTCACAGCCTTTCGGTGCAACTCCACAGCTGGAGCACTTGGACTTCAGCCATTCATACTACACTTTGAATGACAGCTCACCTTTCAGCAATCTACAGAATCTCAAAACTCTGAATCTTTCCTGGTCAAATACCAGTCTGACAAACATGCACCTTTTCAAAGGGTTGAAAAATTTGCAACTCCTCAATCTGAAGGGGAACACAGTTCAACGAGGGGTTCTTACCCAGATGGAGCTCTTTAAATACGTCCCTCTTTTGGAAACCCTCATTCTGTCTTCGTGCAAAATAACTGCTTTTGAAGAGAATTTGTTTAAAGGTCTCGTGCATCTCAGGCAAGTAGACTTGAGTGAAAACACCTTGGTCAAACTGAGCACCTCTGGATTTTACTCTCTGAATTTTCTACAACTTAACTATGCCAGTAATGTCATTGTGACAGTGGATGTTGCAAGTGTTAAGGATCTGGGAAATAATAGTACTGttgatctgagctacaatcccCTGGTATGTAACTGTAGCAACTTTGAGTTCATCAACTGGgttgtgaaaaacaaaatcaaagtcAAACACTTAATGGAGACTACTTGCAATGGCACAGGAACAAGGATCGTCGATGCTGAACTTCAGTGTGAATTACCTGTCATTGTACTTGCATTTGTTGTAGTTCTAGTTGCAATCTTAATTGCATTGGCCATTTTCTGCCTTGTCAGAAGAATTAGAAAATACTCAAGATATTCACAACTGTGAGTTAAGAAGAGTTTGTTTGGTCTCTCTCCAAATGCAGaccacataaacataaaacatgaaaattggCTTTAAGTTGGAgatcaacatcaacaacaaagcaaaaactGACCAGAAAACAAATTGACTAAACTCTGTCTTCAAATAGCATATCTAAGTAGTGTCCTCAAATCTACTTCCTTGATTATGAAGATTTGAagtctttaaagaaaaaaggaaaagacaataaaaggtcattttg

Function

GO: NA

KEGG:

id description
K06555 CD180; CD180 antigen

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57949 lncRNA downstream 126106 24277474 ~ 24280889 (-) True G39137
TU57951 lncRNA downstream 131390 24275360 ~ 24275605 (-) False tmc2a
TU57934 lncRNA downstream 136499 24269863 ~ 24270496 (-) False tmc2a
TU57931 lncRNA downstream 140982 24265740 ~ 24266013 (-) False tmc2a
TU57922 lncRNA downstream 187468 24218993 ~ 24219527 (-) True G39123
TU58148 lncRNA upstream 5387 24414900 ~ 24490792 (-) True G39274
TU58150 lncRNA upstream 5387 24414900 ~ 24490792 (-) False G39274
TU58164 lncRNA upstream 61098 24470611 ~ 24479055 (-) True G39285
TU58192 lncRNA upstream 110154 24519667 ~ 24520387 (-) True G39296
TU58194 lncRNA upstream 112049 24521562 ~ 24522021 (-) True G39298
XM_043239343.1 mRNA downstream 89164 24298530 ~ 24317831 (-) True LOC122345313
XM_043239462.1 mRNA downstream 129691 24265464 ~ 24277304 (-) True tmc2a
XM_043238935.1 mRNA downstream 142277 24253333 ~ 24264718 (-) True LOC122345102
XM_043239461.1 mRNA downstream 154364 24230346 ~ 24252631 (-) True pcsk5a
XM_043239342.1 mRNA downstream 219510 24166208 ~ 24187485 (-) True ntrk2b
XM_043240303.1 mRNA upstream 120895 24530408 ~ 24530963 (-) True pmchl
XM_043238812.1 mRNA upstream 136635 24546148 ~ 24585135 (-) True npr2
XM_043239193.1 mRNA upstream 178211 24587724 ~ 24594116 (-) True anapc2
XM_043239195.1 mRNA upstream 187574 24597087 ~ 24613743 (-) False tprn
XM_043239194.1 mRNA upstream 187574 24597087 ~ 24613730 (-) True tprn
TU57904 other downstream 206499 24197705 ~ 24200496 (-) True G39113
TU57720 other downstream 519315 23887303 ~ 23887680 (-) True G38973
TU57636 other downstream 650407 23751880 ~ 23756588 (-) True G38917
TU57575 other downstream 802262 23602244 ~ 23604733 (-) False LOC122345364
XR_006251119.1 other downstream 2366961 22039901 ~ 22040034 (-) True LOC122346224
XR_006250980.1 other upstream 178515 24588028 ~ 24594116 (-) False anapc2
unassigned_transcript_960 other upstream 508307 24917820 ~ 24917893 (-) True trnan-guu_1
unassigned_transcript_961 other upstream 508492 24918005 ~ 24918076 (-) True trnak-cuu_4
unassigned_transcript_962 other upstream 514635 24924148 ~ 24924220 (-) True trnak-cuu_5
unassigned_transcript_963 other upstream 517467 24926980 ~ 24927051 (-) True trnak-cuu_6

Expression Profile