RNA id: XM_043239352.1


Basic Information

Item Value
RNA id XM_043239352.1
length 2467
RNA type mRNA
GC content 0.50
exon number 9
gene id pja2
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 23671287 ~ 23684780 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGACCCTTAAGTTTCGCGGTGACGTTCGCCGGAGTTAGTTGTGACACAGGAGGCGTCCAGGAACAGAGGTACTGCACGATAACAGACGACACATTTCCTAAAACCAAACACCTTGAATGGGACAAGAAGCAGGCAAGTCTGCATGGCCCAAACCGACAGGAGGATACCAGACCATCTCAGGCAGGAGGTACGGCCGGAGGCACGCATATATCAGTTTCCGGCCAGTTACAGATAAACAAAGAGTCGCGTCCACTGTGGACTGTCAAAACATGGAGAGGACCAGCAGTCAAAAGGACTTGGCAGTGGCATCAAAGGGCAACATTTCTTCAGTGCTTCAGAATATCCTGCCGACAGCGTGCACAAATGCAGTGTGCCCCGAGTTAAACGCGGCGTCAAATCAGGAGGGCCACAGCAGGAGGCAGTCTTCATTGTGTAGAGTCACAAAAGCGCCCTCTAACCATTTCAAGAGACCAAAGAGTGACCAGGTTGTGCCATATGACAGAAAATATTATTCTGGCATAGAAAAAAGGGAACAGGCTAGAGTGTGGCCCTTCAACGAAGACCCTAAGCCCAACCCGGAAGCTCTGAGTTACATAAACATTGACGCCTATGAGCCTGACAGCAGCGGGGCTGAGGAGGAAGACTCCAGTTCAAGCCCATGTCAGGCTGCTCAGAAGAGACTTGATGGTATTTGTGAATTGGGTGGAAATTTGCTCGACGACTCGCATGCTAATGTATTCTCACAAATAAGTAAACGTTCAGTGCAAACGGCGCCTTCTAAAAGCGTAGCAGACCTTTGCTGTGAGCAAGCGGATTTCGACAGAACTGTAAAGGCAAATCAGAAAGTTAGCCCGTTGTCGGTTGGTGAGGACCAAGCTCCAAAATGCCACGGGGTTACAGCCGGCTCTGCGCCCGCTTCCTGTAAAAGCAAGGGAAAAACCGACCCCGAAGAAACGTTTCAGTCCGAAATGGTCGTGAGGCCAAAGATCCGCAAACAGACGAGCGAGACTCACCTTGAAAGGAGGAAACGCTCTGAAAAAGAGGAAGCGAGCCATTTGTCAGGCGCAGCGGTCAGGAACAAGTGTGGCTCAGCACCTCCAGGTTTCCTCGCACAAACAAGCTCTGAAAATGAGTTGCTTTTTGACTTTCCACCCATGGCCTTGAGCGACCTCAACTCCGAGGACAAGAAAAATGAAGGTGACAACACCAAAGTAGATGAGGAGGATGGCGATGAGATTTGGGAAGATCTGGAGAATTTTGGAGAGAAATGTGACCCAGCTATAAAGGGCGACGAAAgCAGCAGCTCAGAATTCAGTGAGGGCGAGTGGTCTGCCTCGTGGACGTCTGACTCTGGGCTGGAGAAAGAGAGGTGCACGAGTGAGGAGAGTTGGGAGACTCTGCCTGGCATGGATGAGCCGCctgacagcagcagcagcagcagcagtctgGAGGAAGTGCCTTCTCTCAACCTCGCTTTAGAGGAGCAGACCCCCTTGGAGGAGGGCGAGATCCCCTGGGTCATGTATAATGAGGACTCGGGCAGCAGCAGTGATGAAGACCCTGATGGTGTCAGTCAGTTTGTTCACCCTGGACTCTTTATCCTGGATGGCAACAATAACCTGGAGGATGATTCCAGCATGAGTGAAGACCTGGACACAGAATGGAGgtttctggATGAATTCGGCGACGGTTTTGGGATGGCTCAAGCTATCTCTTACGTAGATCATTCCCAGCTGCTTACTTACATGGCGCTAGAGGAACGTCTTGCTCAGGCAATGGAGGCAGCACTGGCTCATCTGGAGTCTTTGGCTATAGATGTGGAGCAGGCTCATCCCCCCGCCACTGAACAAATCATCGACTGCCTACCCCAGATCACCATCAATGCCGAAAACATCGAGCAGGAGCAGTGCTGTGCCATCTGCTGTTGTGAATACGTCAAAGATGAGATTGCAACCCTGCTGCCGTGCCGCCACATGTTCCACAAACTCTGTGTCACTCTCTGGCTCAGAAAGTCTGGTACCTGTCCAGTGTGTCGTCACGTTCTGACCCCAGCGGTGACCAAACCTGCGTCTTCAAACGCCGATCAAGAAACGCCCCCGTCTGGGGGTCACAGCGCGTCTGGGGGAACGTGTTGAGCGTCAGTCGTACACCCATCAAAACATCTCGCAAAGAAACACTTCAGTACTAAATAATcactcacttaaaaaaaaaaaggaaagcagcGGCCTGAACTAGCTTTCAGATCCCATTTAACCTAGTGCTGCAATTCATGGTCCAAACGTGGCGAACTAAAACttattttctgagaaaatatGAATACGTATATATTCATAGGaagcatatttattcatgtttcaaTTAAAACGTTTTTGTACATCCAGGCTAAACGCAGTTACATGTCTTTAACTTTTCACGTCATGTCAAGTAAAAATGCAGTCCCTCAATAAAAGTGATAATTTCTTGCTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57600 lncRNA downstream 1418 23666841 ~ 23669869 (-) True G38892
XR_006250995.1 lncRNA downstream 65539 23602236 ~ 23605748 (-) True LOC122345364
TU57397 lncRNA downstream 313140 23357574 ~ 23358147 (-) True G38769
TU57395 lncRNA downstream 325490 23345589 ~ 23345797 (-) True G38767
TU57383 lncRNA downstream 539288 23127219 ~ 23131999 (-) False nrgna
TU57729 lncRNA upstream 217916 23902619 ~ 23902898 (-) True G38982
TU57791 lncRNA upstream 292473 23977176 ~ 23978527 (-) True G39034
TU57774 lncRNA upstream 294961 23979664 ~ 23997739 (-) False aatf
TU57811 lncRNA upstream 383927 24068630 ~ 24069914 (-) True G39050
TU57825 lncRNA upstream 403177 24087880 ~ 24088812 (-) True G39057
XM_043239458.1 mRNA downstream 35119 23633681 ~ 23636168 (-) True atp6v1g1
XM_043239441.1 mRNA downstream 38596 23623500 ~ 23632691 (-) False slc31a1
XM_043239359.1 mRNA upstream 49040 23733743 ~ 23740396 (-) True tmem232
XM_043239366.1 mRNA upstream 296046 23980749 ~ 23990500 (-) False aatf
XM_043239365.1 mRNA upstream 296046 23980749 ~ 23990500 (-) True aatf
XM_043239401.1 mRNA upstream 306588 23991291 ~ 23996276 (-) True lhx1b
XM_043239404.1 mRNA upstream 355003 24039706 ~ 24042737 (-) True mrm1
TU57575 other downstream 66554 23602244 ~ 23604733 (-) False LOC122345364
XR_006251119.1 other downstream 1631253 22039901 ~ 22040034 (-) True LOC122346224
XR_006251116.1 other downstream 1711403 21959785 ~ 21959884 (-) True LOC122346220
XR_006250934.1 other downstream 1787265 21878156 ~ 21884022 (-) False LOC122344823
TU57636 other upstream 67177 23751880 ~ 23756588 (-) True G38917
TU57720 other upstream 202600 23887303 ~ 23887680 (-) True G38973
TU57904 other upstream 513002 24197705 ~ 24200496 (-) True G39113
XR_006250980.1 other upstream 903325 24588028 ~ 24594116 (-) False anapc2
unassigned_transcript_960 other upstream 1233117 24917820 ~ 24917893 (-) True trnan-guu_1

Expression Profile