RNA id: XM_043239440.1


Basic Information

Item Value
RNA id XM_043239440.1
length 1103
RNA type mRNA
GC content 0.39
exon number 6
gene id ufc1
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 23526578 ~ 23528254 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAAAGATCCGACTCTTTGCGAATCGGACGTAGAGTCAACATGGCAGATGAAGCCACTAGGAaggcagtttctgaaataccgcttttaaaaactaattcagGACCGAGAGATAAAGAACTATGGGTTCAGAGACTTCGAGAAGAATATTTAGCTCTTATTAAGTATGTTGAAAATAACAAAGCAGCCGACAATGATTGGTTCCGTCTGGAGTCCAACAAAGAGGGCACAagGTGGTTTGGAAAATGCTGGTATATTCACGAGCTTCTCAAATATGAATTTGACATGGAATTCGACATTCCAGTGACATATCCTGCCACAGCACCTGAAGTGGCCATTCCTGAGTTAGATGGGAAGACAGCGAAGATGTACAGaGGTGGAAAAATCTGTCTGACGGATCACTTCAAGCCACTGTGGGCAAGGAATGTCCCAAAGTTTGGTCTGGCTCATCTTATGGCTTTGGGACTTGGACCGTGGCTTGCAGTTGAGATTCCAGACCTCATCGCAAAAGGCATAATTCAGCATAAAGAGcaacaaaacagctgaaaacagtGGCAGCCTTTGCGTTTCACCATGTCTTACTGACGCTAACACAGCTGACCATCACAACGACGCCGGCCTGTTTTCCCTATGTTCTGAATTTTTTGTTTGCAACCTCACAGAAACCGTGTACTTCCCTTTCATTCTTGTACATAGATCTGTTTTTTATCACAGTATTGGCAAGGTTTATAATACCTGTCTTATGGAACATGTACGTTTCTTCATCAGTAAACCTGGGCGCATAAACGTCGCTCTGTATAATGGTATGGATTAGGTAAACCTAGAAGTAGAAACTATGCTAAATTATAATCTTTTTCTCAGCTGGAATATTTCTTTGGTAACAGCGTtacaaaaatggtaaaatatgtTACCGTATGtttataatttgtaaattaattcaATCGAAGGCGTCGTTTAAATCTTAAGTGACAAAGTTTCTTGGCCTTATTGCAGTTGTCCCAGAGTGGTAATTAAGGAAGGACTTGGTGatttccttttattaaaaattgtggttatttttaaggaatttaaaagtgtatacattaaaatatatttgcacagTCAAA

Function

GO:

id name namespace
GO:0071569 protein ufmylation biological_process
GO:0071568 UFM1 transferase activity molecular_function

KEGG:

id description
K12165 UFC1; ufm1-conjugating enzyme 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57397 lncRNA downstream 168431 23357574 ~ 23358147 (-) True G38769
TU57395 lncRNA downstream 180781 23345589 ~ 23345797 (-) True G38767
TU57383 lncRNA downstream 394579 23127219 ~ 23131999 (-) False nrgna
TU57350 lncRNA downstream 489108 23036457 ~ 23037470 (-) True G38747
TU57216 lncRNA downstream 650141 22873971 ~ 22876437 (-) True G38658
XR_006250995.1 lncRNA upstream 73982 23602236 ~ 23605748 (-) True LOC122345364
TU57600 lncRNA upstream 138587 23666841 ~ 23669869 (-) True G38892
TU57729 lncRNA upstream 374365 23902619 ~ 23902898 (-) True G38982
TU57791 lncRNA upstream 448922 23977176 ~ 23978527 (-) True G39034
TU57774 lncRNA upstream 451410 23979664 ~ 23997739 (-) False aatf
XM_043239403.1 mRNA downstream 2828 23519260 ~ 23523750 (-) True fdxacb1
XM_043239354.1 mRNA downstream 8430 23510178 ~ 23518148 (-) True alg9
XM_043239355.1 mRNA downstream 8431 23510178 ~ 23518147 (-) False alg9
XM_043239361.1 mRNA downstream 20835 23495138 ~ 23505743 (-) True ppp2r1ba
XM_043239435.1 mRNA downstream 78440 23446697 ~ 23448138 (-) True btg4
XM_043239384.1 mRNA upstream 20461 23548715 ~ 23554487 (-) False bicdl2
XM_043239386.1 mRNA upstream 20461 23548715 ~ 23554446 (-) False bicdl2
XM_043239383.1 mRNA upstream 20461 23548715 ~ 23554446 (-) False bicdl2
XM_043239385.1 mRNA upstream 20461 23548715 ~ 23554351 (-) True bicdl2
XM_043239446.1 mRNA upstream 31100 23559354 ~ 23562751 (-) True cryabb
XR_006251119.1 other downstream 1486544 22039901 ~ 22040034 (-) True LOC122346224
XR_006251116.1 other downstream 1566694 21959785 ~ 21959884 (-) True LOC122346220
XR_006250934.1 other downstream 1642556 21878156 ~ 21884022 (-) False LOC122344823
XR_006250933.1 other downstream 1642556 21878156 ~ 21884022 (-) False LOC122344823
XR_006251046.1 other downstream 1700473 21809013 ~ 21826105 (-) False akap10
TU57575 other upstream 73990 23602244 ~ 23604733 (-) False LOC122345364
TU57636 other upstream 223626 23751880 ~ 23756588 (-) True G38917
TU57720 other upstream 359049 23887303 ~ 23887680 (-) True G38973
TU57904 other upstream 669451 24197705 ~ 24200496 (-) True G39113
XR_006250980.1 other upstream 1059774 24588028 ~ 24594116 (-) False anapc2

Expression Profile