RNA id: XM_043239443.1


Basic Information

Item Value
RNA id XM_043239443.1
length 2099
RNA type mRNA
GC content 0.44
exon number 6
gene id slc31a1
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 23623500 ~ 23632691 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTGCCTCTGACTTCACGCTGTAGGAGCATCTCGCCGCTGGTCAGAGGAAAGattgtgttcatttattctTGTCCCAAAACTGACGATTTGCAGTTAATATCAGAAACACCGAAGCACCAGGTGGACGCATTCGTCGCGTGCTGTCAAGAAAGCAGCATTATGCGAAACATAAAGTAAATCCAGAGGCGGGTTATGATCAgCACCTCTGTGAAGTGAGATAAAGATGTCAGATCCACACAGTCACCACATGCACCCAACCGTGCAGTCTGCCGTCTCAGACCCTCACGGGGACCATATGACGTCCCCCGACGCAGGCCATGGGGAtcacatgatgatgatgatgCAAATGACCTTCTACTTCGGCTGCAAAAACGTGGAGCTGTTATTCGCTGGGCTGGTCATCAACACACCAGGAGAAATGGTAGGCGCATGCATTGGTGTGTTCTTGCTGGCTGTGTTCTACGAGGGCCTGAAGATCGGCCGCGAGGTCCTGCTCAGGAGGAATCAGGTGAACGTGCGTTACAACTCCATGCCTGTCCCAGGAGCTGATGGCACCGTGCTCATGGAGACGCATAAAACAGTCGGCCAGCGGATGATGAGTCTGGCGCACTTCTTACAGACGTTCCTTCACATCATCCAAGTGGTGGTCAGTTACTTCCTCATGCTGGTGTTCATGACGTACAACGGCTACCTGTGCATCGCAGTGGCGGCGGGCGCCGGCTTCGGCTACTTCCTGTTCAGCTGGAAGAAGGCAGTAGTGGTGGATATTACTGAACACTGTCATTAACTTCTCCCGTGTATAACCTCGAAAAACCACCACTTCACGATCCCAACGTGCACCGCAACTCTATATGTGCTGGGCACGATATGATTTTTGTAAATCTCTGTTaatttttaaccttttattttgaatcaaattagCCCCGTATTTCATATCTCAACAACCGTTCATCATCAACATCACAGCCTATCAGTCTACCTCCATAGTACTGACATTATTTGTAACTTCTCGCAAATTATTAAGGTTATGATGGTGCGAAAGAGCCTTACTAAACCTTTTGCCTTAAATGAGGGAACGCACGCATACCCCCCAAGAGGGCGACTGTAGACTCTAAAAGCCCAACTGGATCTGGTGGACCCAATATACAAGCACTAGCGGTGGGAGGgtggttttttttggttggttttCTTTGAGGTTGTTATGGCCAAGTGTTTCAAATCGCTGAAACGACCGTTAATAATCAGTGACCATTGTTTAGACATAAACACTGGACTGAATGATGTTTGCACAAGAAAGAGAGCTTTTGGGACTCTTGAGTTTGCAGAGTTTCAAGTCGAACTTTGCTCCCTTTGGAGTGCTTTTAAGTAAATACAGGGGGGAAAAGTGgaatataaattatatctgATGCCAGTGTCACCGACttagttttataatttatatttgtaacacTCAACTGTACTTGTTATCAGTCTTTTCTGGCAATCTTTATGTGGATCCTTTTACgttatgacatttttaaatccaAAAACTGTGGCGCATTTGTGATGTTGAGCGAATCGTGagctgttaaaaacattaagGTCATCGCTCTGATAGTTACTGGGTCTCGGTAATGTGAATTTTACGCGGAAAATGAAGATAATTATGCTCCTTAATTAAAAGGAGTGTGCCTTTTACATACAGGACCCAATAAAAGTGCCCAAAGAGTGTCTCAACTGCTTTCAAACACAAAGCTTTCTTAACGAGAAAACCACATTTTAAACGTGTGGGTTTTGGAAGAAAGCCcgttttttgttcctttttaattttttttttttttgctgaaaaactCTTCACGTCATGTTTTTGTAGCAGCTGTCACTTTGTAGAATTGGATCTGAGGTTCTGTTCTTCATCACGGTGGGCATTCATACCGctgatttctttcaaaagcaaaGGTTTGCTTCGTCTTAACTACAACTGTAGACCGAACCTCATTTCCAGTGCTGTGGCAATCTTAAGATTTCTTAGTCTGTTTACAGTCCAGTCAAGTCTGTAGAGTAATGTACTGTAATCATAAggaaaatgaagaataaatatTGTACGACTTCAAAGATA

Function

GO:

id name namespace
GO:0042539 hypotonic salinity response biological_process
GO:0071391 cellular response to estrogen stimulus biological_process
GO:0046688 response to copper ion biological_process
GO:0035434 copper ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005375 copper ion transmembrane transporter activity molecular_function

KEGG:

id description
K14686 SLC31A1, CTR1; solute carrier family 31 (copper transporter), member 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250995.1 lncRNA downstream 17752 23602236 ~ 23605748 (-) True LOC122345364
TU57397 lncRNA downstream 265353 23357574 ~ 23358147 (-) True G38769
TU57395 lncRNA downstream 277703 23345589 ~ 23345797 (-) True G38767
TU57383 lncRNA downstream 491501 23127219 ~ 23131999 (-) False nrgna
TU57350 lncRNA downstream 586030 23036457 ~ 23037470 (-) True G38747
TU57600 lncRNA upstream 34156 23666841 ~ 23669869 (-) True G38892
TU57729 lncRNA upstream 269934 23902619 ~ 23902898 (-) True G38982
TU57791 lncRNA upstream 344491 23977176 ~ 23978527 (-) True G39034
TU57774 lncRNA upstream 346979 23979664 ~ 23997739 (-) False aatf
TU57811 lncRNA upstream 435945 24068630 ~ 24069914 (-) True G39050
XM_043239378.1 mRNA downstream 2340 23616176 ~ 23621160 (-) False prpf4
XM_043239377.1 mRNA downstream 2340 23616176 ~ 23621160 (-) True prpf4
XM_043239446.1 mRNA downstream 60749 23559354 ~ 23562751 (-) True cryabb
XM_043239383.1 mRNA downstream 69054 23548715 ~ 23554446 (-) False bicdl2
XM_043239458.1 mRNA upstream 996 23633681 ~ 23636168 (-) True atp6v1g1
XM_043239353.1 mRNA upstream 38602 23671287 ~ 23684780 (-) False pja2
XM_043239351.1 mRNA upstream 38602 23671287 ~ 23684780 (-) True pja2
XM_043239352.1 mRNA upstream 38602 23671287 ~ 23684703 (-) False pja2
XM_043239359.1 mRNA upstream 101058 23733743 ~ 23740396 (-) True tmem232
TU57575 other downstream 18767 23602244 ~ 23604733 (-) False LOC122345364
XR_006251119.1 other downstream 1583466 22039901 ~ 22040034 (-) True LOC122346224
XR_006251116.1 other downstream 1663616 21959785 ~ 21959884 (-) True LOC122346220
XR_006250934.1 other downstream 1739478 21878156 ~ 21884022 (-) False LOC122344823
TU57636 other upstream 119195 23751880 ~ 23756588 (-) True G38917
TU57720 other upstream 254618 23887303 ~ 23887680 (-) True G38973
TU57904 other upstream 565020 24197705 ~ 24200496 (-) True G39113
XR_006250980.1 other upstream 955343 24588028 ~ 24594116 (-) False anapc2
unassigned_transcript_960 other upstream 1285135 24917820 ~ 24917893 (-) True trnan-guu_1

Expression Profile