RNA id: XM_043239458.1


Basic Information

Item Value
RNA id XM_043239458.1
length 1054
RNA type mRNA
GC content 0.45
exon number 3
gene id atp6v1g1
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 23633681 ~ 23636168 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

cagcgtgaCGCTCGATCAGCTGACGTTCACTCGACCTTCTTCACTGCGGGAGATACGGACTTCTCTACGGCTCATCCGCGGCGGTTCAACTACATCCCGTACTGAAGCATGGCGAGCCAGTCTCAAGGCATCCAGCAGCTGCTGCAGGCGGAGAAACGAGCCGCGGAAAAGGTCGCAGAAGCCCGTAAAAGAAAAAATCGTCGCCTGAAGCAAGCCAAAGAAGAGGCGCAGGCTGAGATTGAGCAGTACCGTCTACAAAGGGAGAAAGAGTTTAAGACAAAGGAGGCTGCGGCCCTGGGGTCCCATGGAAACTCGGCTGTGGAGGTGGATAAGGAGACCGTCGATAAGATGAGCCGCATCCAGAGCAGTTATCAGCAGAACAAGGAAGCCGTGCTGGCCAACCTGCTGAAGATGGTGTGCGACATCAAGCCAGAGATCCACGCCAATTACCGCGTCGCTGGATAAACGCCACATCCGTTACAATCCCTAAAGGCCCACAAAGCACCGAGACAAAGACTGCTGCTGGACATATCACGTCACAATCACCATAGATAGATAGCCGGACCGCTTAAGATAACACCTCTCATCTAGATTACAACTTCAACGCTTTACCGAAGGTTGAAAATTCATTTAAACCTAAACCAGTCGGTGGTGCACATCACAGCATTTCTCATCGTTCGCAGAAATATCTTTGATATGATCTTACTGCCAGTCTTTGTCTCTGTTGTTTTAGTTAACCGTAGTATTGTCCAGTATATCAGAGTGAGTTTCCTTGTGAATGATacctttaaatgtttgtatggAAGTCTGTATCTCAACGCTACATTCTTAATTTATGAGGAATCAGATGTTGTTTTATCTAACTGATGTGTACTTCGtcatttttttgatgttgtttttttttgtgtgacaaagatcataattatcataatctTAATGCTGTATTCGTAATTAAATATGCTTCCTTCCCACGCTTTTGTTCTGTATATGTAGATGGCGTTCCTCTATTTCGGCCTgctgtgaaaatgtaataaatggtATGTGTACAAATGGA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0055085 transmembrane transport biological_process
GO:0016471 vacuolar proton-transporting V-type ATPase complex cellular_component

KEGG:

id description
K02152 ATPeV1G, ATP6G; V-type H+-transporting ATPase subunit G

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250995.1 lncRNA downstream 27933 23602236 ~ 23605748 (-) True LOC122345364
TU57397 lncRNA downstream 275534 23357574 ~ 23358147 (-) True G38769
TU57395 lncRNA downstream 287884 23345589 ~ 23345797 (-) True G38767
TU57383 lncRNA downstream 501682 23127219 ~ 23131999 (-) False nrgna
TU57350 lncRNA downstream 596211 23036457 ~ 23037470 (-) True G38747
TU57600 lncRNA upstream 30673 23666841 ~ 23669869 (-) True G38892
TU57729 lncRNA upstream 266451 23902619 ~ 23902898 (-) True G38982
TU57791 lncRNA upstream 341008 23977176 ~ 23978527 (-) True G39034
TU57774 lncRNA upstream 343496 23979664 ~ 23997739 (-) False aatf
TU57811 lncRNA upstream 432462 24068630 ~ 24069914 (-) True G39050
XM_043239441.1 mRNA downstream 990 23623500 ~ 23632691 (-) False slc31a1
XM_043239443.1 mRNA downstream 996 23623500 ~ 23632685 (-) True slc31a1
XM_043239444.1 mRNA downstream 3754 23623500 ~ 23629927 (-) False slc31a1
XM_043239442.1 mRNA downstream 4610 23623500 ~ 23629071 (-) False slc31a1
XM_043239378.1 mRNA downstream 12521 23616176 ~ 23621160 (-) False prpf4
XM_043239353.1 mRNA upstream 35119 23671287 ~ 23684780 (-) False pja2
XM_043239351.1 mRNA upstream 35119 23671287 ~ 23684780 (-) True pja2
XM_043239352.1 mRNA upstream 35119 23671287 ~ 23684703 (-) False pja2
XM_043239359.1 mRNA upstream 97575 23733743 ~ 23740396 (-) True tmem232
XM_043239366.1 mRNA upstream 344581 23980749 ~ 23990500 (-) False aatf
TU57575 other downstream 28948 23602244 ~ 23604733 (-) False LOC122345364
XR_006251119.1 other downstream 1593647 22039901 ~ 22040034 (-) True LOC122346224
XR_006251116.1 other downstream 1673797 21959785 ~ 21959884 (-) True LOC122346220
XR_006250934.1 other downstream 1749659 21878156 ~ 21884022 (-) False LOC122344823
TU57636 other upstream 115712 23751880 ~ 23756588 (-) True G38917
TU57720 other upstream 251135 23887303 ~ 23887680 (-) True G38973
TU57904 other upstream 561537 24197705 ~ 24200496 (-) True G39113
XR_006250980.1 other upstream 951860 24588028 ~ 24594116 (-) False anapc2
unassigned_transcript_960 other upstream 1281652 24917820 ~ 24917893 (-) True trnan-guu_1

Expression Profile