RNA id: XM_043239468.1


Basic Information

Item Value
RNA id XM_043239468.1
length 2735
RNA type mRNA
GC content 0.50
exon number 20
gene id aifm1
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 11623389 ~ 11634450 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGAAGCGCCTGTAGGAGCTGTGTGACCTGAGAAGGTCTCCGGCCTTGTGCTAGAGCTGCACGGTGAGCGTGGCTGTGAACTTCACCAGGCTGTCTTTCCGAAAAGCACAGCAGAGCTGCGATGTTTAAGTGCAAGGCAGTATGGAATAAACTGGCCCCGCTGGCCCGGGCCTCATCCACGCTGTGTCTGCAGAATGCGAGGAAATCAGCGCTGAGACACGGGAGAAGGCTGCAGATGGTTCAGAAAGCCCAGATGTCATCAGGGCCAGCAGGAGGGGGTGGCGAAAACACGCTGTATTATGTCCTGATTGGAGCGACATGTCTGGGGGCAGGAGTTTATGCATACCGCACGGTCTCAGGGGACAAAGAAAGATATAATGAGCGTATGCTAGAAATTGCCAGTAGACCAAAACAAGGGCCACAAGCAGCTGAGGCTGTAGCTGAAGTCGTGTCAGAATCAAAGGAAGATGCTGCACCTCTGGAAACCATCCACGAACCATCTTCAGAGCCAATTAAGAGTGAGCCTGCTGCTGAAGAGCCTACTCTAACAGAACCTACTGTTGAAGAACCTCTGGTAATAGAAGCTGATGTGGAGTCCACTGAATCTGACCCTGTTGCAGAAGCTCCCGTAACAGAACCCATTGTAGAAGAACCTGTAACCGAACCCGTTGTAGAAGAACCTGTAACAGAACCAATTGTAGAAGCTTCTCTTCTGGAACCCTTTGTGGAACTGCCTGCTGTCGAAGCCTCTGTAACAGAACCTGCTGCAGAAGCTCCAGCAGTTACACAGAGCGAAGAGCCCTTAGCTCCTGTTGTTGAGAGTGATACAGAGTCTACACCTGTAATCATCGCTGAGCATGTTCCGGAGACTTCGTCTATTTCTGAGAGTGATGCAGTATCTAAAGAAGCTCCTGCTGCTGAGCCCGTTGAACCCACTGCTGCTCCCTCAGATGTCCCTGATCATGCTCCCTATCTGCTGATTGGTGGAGGCACGGCTTCGTTTGCTGCAGCTAGGTCCATCCGGGCACGTGACCCTGGTGCCAGGGTGTTGGTTGTAACAGAGGAGGCTGACCTGCCCTACATGAGACCTCCTCTCTCTAAAGAACTGTGGTTCTCTGATGACCCCAAGGCCATCGAAACACTGCGCTTCAAACAATGGAATGGCAAAGAGAGGAGCATCTACTTCCAGCCTCCTTCGTTCTACGTCAGTCCCGCGGATCTTGCTAAAGTGGAGAATGGGGGTGTGGCTGTGCTCACGGGACGTAAGGTGGTACACATGGATGTCAGAGGAAATAAAGTCAAACTGAGTGATGGTTCAGAGATCTCATATGAAAAGTGCCTGATTGCCACAgGTGGGGTGCCTAGGAACCTGCAAGTAATTGACAGAGCAGGAGAGGACGTGGCGAAGAGGACAACCCTCTTCAGAAAAATTGAAGATTTTAGATCTCTAGAGAAGACCTCCAGAGAGGTTAAATCCATTACCATTATCGGCGGAGGTTTTCTCGGCAGCGAGCTAGCATGTGCCTTGGGTCGCAGAACCACTGACATTGGTTTAGAGGTGATCCAGATGTTCCCAGAAAAGGGCAACATGGGAAAAGTACTGCCTGAATATTTGAGTAACTGGACCACTGAGAAAGTCAGAAAAGAGGGAGTGAGCGTAATCACAGATGCTGTagtgaaaaatgtgaattacaaaaatgacaaattggAGATCAAACTGAAGGACGGACGACTGATTAAGACAGACCACATCGTGGCAGCAGTAGGCCTGGAGCCTAGTGTGGAACTTGCCAAATCTGCTGGACTGGAGGTGGACTCTGACTTCGGAGGGTACCGGGTTAATGCTGAGCTTCAGGCTCGTTCCAACATCTGGGTGGCAGGAGATGCTGCATGTTTCTATGACATCAAGCTGGGCCGGCGACGTGTAGAGCATCACGATCACGCCGTGGTCAGCGGCAGACTTGCTGGAGAGAACATGACCGGAGCCAGCAAACCTTACTGGCATCAGTCAATGTTCTGGAGTGATCTAGGTCCAGATGTAGGATACGAAGCTATTGGTATAGTGGACAGCAGTCTGCCCACCGTGGGAGTGTTTGCTAAAGCCACAGCCAAAGACACACCAAAAGCTGCAACAGAACAGTCAGGCACCGGAATCCGTTCCGAGAGTGAGACAGAGGCAGTTGCAGGGACGTTAAAGGCAGAAACAACGGCCACTCCACCTCCTATCCACCAAAAGGAGGATTTTGGGAAAGGAGTGATATTCTACCTGAGGGACCAAGTGGTGGTCGGTGTTGTACTGTGGAACGTCTTCAACAGAATGCCCATCGCAAGAAAGATAATCAAAGACGGAGAACAACATGCAGATCTTAATGAGGTGGCCAAGCTTTTCAACATCCATGAAGACTGAACAATCATTTCACTTTCTACTCTGTCAAGGACAAATCTACGTGTAGTGAACTTGggaaaagacacacacacacgcacacatacatacacactgaACAAACACATACAGGCTAACACCAGCCAGTCCTCTGCCATTTTGACCTCGCAGTCTCTGATATCAGGAAATGCCATGCTGACTCCAAGCTGCAAGATGGCGCTGTGCCCATGGATTGTTTAAAACTGTACCACTCAATTTTCTACTGAGGGAAATCTATACCTGTTGTTTGTATTGAAAAGctgtgttgtgttgtttttttttctgtttaggtCAGTAAATGTTTATCTCGCTTC

Function

GO: NA

KEGG:

id description
K04727 AIFM1, PDCD8; apoptosis-inducing factor 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52055 lncRNA upstream 92145 11530518 ~ 11531244 (+) True G35350
TU52008 lncRNA upstream 158050 11463869 ~ 11465339 (+) True G35316
TU52017 lncRNA upstream 180978 11441539 ~ 11442411 (+) True G35322
TU52002 lncRNA upstream 208701 11414041 ~ 11414688 (+) True G35311
TU51998 lncRNA upstream 217628 11405528 ~ 11405761 (+) True G35309
TU52095 lncRNA downstream 15807 11650257 ~ 11652683 (+) False glra4b
TU52094 lncRNA downstream 16178 11650628 ~ 11652683 (+) False glra4b
TU52388 lncRNA downstream 72209 11706659 ~ 11706998 (+) True G35584
TU52389 lncRNA downstream 73081 11707531 ~ 11707773 (+) True G35585
TU52435 lncRNA downstream 93826 11728276 ~ 11728601 (+) True G35606
XM_043239835.1 mRNA upstream 4321 11615592 ~ 11619068 (+) True casp22
XM_043239833.1 mRNA upstream 8663 11609770 ~ 11614726 (+) True nono
XM_043239834.1 mRNA upstream 8663 11609770 ~ 11614726 (+) False nono
XM_043240588.1 mRNA upstream 14003 11604827 ~ 11609386 (+) True zgc:113208
XM_043238164.1 mRNA upstream 104486 11514409 ~ 11518903 (+) True apool
XM_043239472.1 mRNA downstream 4066 11638516 ~ 11650319 (+) False glra4b
XM_043239471.1 mRNA downstream 4079 11638529 ~ 11650319 (+) True glra4b
XM_043239984.1 mRNA downstream 22121 11656571 ~ 11680543 (+) False sptbn4a
XM_043239985.1 mRNA downstream 22121 11656571 ~ 11680543 (+) False sptbn4a
XM_043239982.1 mRNA downstream 22122 11656572 ~ 11680543 (+) True sptbn4a
XR_006251083.1 other upstream 561075 11046480 ~ 11062314 (+) False map7d2a
XR_006251113.1 other upstream 690226 10926823 ~ 10933163 (+) False senp3a
TU51709 other upstream 892337 10729118 ~ 10731052 (+) False osbp2b
TU51450 other upstream 1505263 10064217 ~ 10118126 (+) True fam219ab
TU51316 other upstream 1824031 9796390 ~ 9799358 (+) True si:ch211-102c2.4
XR_006251021.1 other downstream 289778 11924228 ~ 11942072 (+) False smarca1
TU52593 other downstream 614688 12249138 ~ 12255672 (+) True G35720
TU52594 other downstream 614688 12249138 ~ 12255672 (+) False G35720
TU52818 other downstream 879626 12514076 ~ 12516108 (+) False si:ch211-225b11.4
TU52846 other downstream 1068921 12703371 ~ 12705241 (+) False iscu

Expression Profile