RNA id: XM_043239473.1


Basic Information

Item Value
RNA id XM_043239473.1
length 520
RNA type mRNA
GC content 0.51
exon number 5
gene id rpl36a
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 11650439 ~ 11652716 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tgtGTGCGCGGTATATCGACCGTTAGGTGGTAGCATCGTGCAACAGCAAACAGCGCGAGACCTCTCTCGTGCGACCCGGTACTAATGCGCTGAGTGACGTATGCACTTCCTCTTTGCTCCTGCGCCGCGAGGGCAACCATGGTGAACGTACCGAAGACCCGCAGGACTTACTGCAAGAAATGCAAAAAGCACCAGCCACATAAAGTGACCCAGTACAAGAAGGGCAAGGACTCTCTGTACGCCCAGGGAAAGAGGCGTTACGACAGAAAGCAGAGTGGTTATGGAGGACAGACAAAGCCTATTTTCCGGAAAAAGGCTAAAACCACAAAGAAGATTGTGCTGAGGCTGGAGTGCGTGGAGCCCAACTGCCGCTCAAAGAGGATGCTGGCCATTAAGAGATGCAAACACTTTGAGTTAGGAGGAGACAAGAAGAGAAAGGGCCAGGTCATCCAGTTCTGAGCTGGGCCAAATGCTTCTGTTGTGGTTTACCATCACTGTCAATAAAAGTTGTATACAGTTA

Function

GO:

id name namespace
GO:0051726 regulation of cell cycle biological_process
GO:0006412 translation biological_process
GO:0009790 embryo development biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02929 RP-L44e, RPL44; large subunit ribosomal protein L44e

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52196 lncRNA downstream 320073 11304281 ~ 11330366 (-) False G35434
TU52195 lncRNA downstream 320073 11324745 ~ 11330366 (-) True G35434
TU52305 lncRNA downstream 337609 11311549 ~ 11312830 (-) True G35522
TU52216 lncRNA downstream 400433 11249199 ~ 11250006 (-) True G35450
TU52278 lncRNA downstream 429548 11219968 ~ 11220891 (-) True G35499
TU52399 lncRNA upstream 18241 11670957 ~ 11674817 (-) True G35592
TU52405 lncRNA upstream 39834 11692550 ~ 11694947 (-) True G35594
TU52415 lncRNA upstream 43475 11696191 ~ 11697674 (-) True G35597
TU52417 lncRNA upstream 45232 11697948 ~ 11699666 (-) True G35599
TU52418 lncRNA upstream 45232 11697948 ~ 11699511 (-) False G35599
XM_043239836.1 mRNA downstream 28999 11619110 ~ 11621440 (-) True tnfsf10l4
XM_043238595.1 mRNA downstream 50597 11583955 ~ 11599842 (-) True mtnr1c
XM_043240918.1 mRNA downstream 67626 11580834 ~ 11582813 (-) True vma21
XM_043238929.1 mRNA downstream 76476 11527062 ~ 11573963 (-) False npas2
XM_043238930.1 mRNA downstream 95392 11527062 ~ 11555047 (-) True npas2
XM_043239992.1 mRNA upstream 29504 11682220 ~ 11689922 (-) True LOC122345659
XM_043240477.1 mRNA upstream 51515 11704231 ~ 11707716 (-) True LOC122345938
XM_043240190.1 mRNA upstream 78803 11731519 ~ 11768014 (-) True arhgap20b
XM_043240189.1 mRNA upstream 78803 11731519 ~ 11768013 (-) False arhgap20b
XM_043238168.1 mRNA upstream 124896 11777612 ~ 11786143 (-) True fdx1b
TU52323 other downstream 183317 11419955 ~ 11467122 (-) False hmgn7
TU52322 other downstream 183317 11463831 ~ 11467122 (-) True hmgn7
TU52116 other downstream 724276 10923927 ~ 10926163 (-) True G35384
TU52098 other downstream 776375 10868364 ~ 10874064 (-) True G35371
TU51745 other downstream 1188730 10461208 ~ 10461709 (-) True G35122
TU52507 other upstream 148598 11801314 ~ 11815810 (-) False msna
TU52701 other upstream 512694 12165410 ~ 12169327 (-) False sh2d1aa
TU52745 other upstream 665087 12317803 ~ 12319685 (-) True G35825
TU52956 other upstream 849198 12501914 ~ 12505958 (-) True G35936
TU53125 other upstream 1401128 13053844 ~ 13054857 (-) True G36047

Expression Profile