RNA id: XM_043239510.1


Basic Information

Item Value
RNA id XM_043239510.1
length 2235
RNA type mRNA
GC content 0.44
exon number 9
gene id oclnb
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 10046898 ~ 10052562 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGATGTGTTGTGAGAGAGACGGCAGATCTATGAAACTCTCTCGGTATTTAGCGGGCGTTTCCTGAAGGCTGAGCGTCTTGAAGGTCCGTGAAATACTCCTGTAAGGAGCGAGGAAGGCTTACAAATTATTTACCAGCAGTAAACGCTTTGGTAAGGATTGAggATTTGACCCAGATAACCCTGTGAAGTTTGTCCAGGAAGCTAACAACATGCCAAAAAAATCAAGTCACCCTCCTGCATATGGAGGCAGACATCATCGCCGAACCTCCCATCGCGCACCTTCTTATCACCCCGATGAAATGCTTCACTTTTACCGCTGGACATCACCCCCAGGTGTCATGAAGATCTtgtgcatcatcatcatcattttgtGTGTGGCTATGTTTGCCTGCGTAGCCTCCACACTGGCATGGGACTATGATGCCAGCGCCATGGGCCTTGGGAGTCTTGGGATGGGAGGCTATGGAGGCAGCTATAGCGGTGGATCATACAGTGGAGGATCATACGGCGGTGGATCATACGGCGGTGGGCTCAGTGGATATGGAGGAGGCTATGGTGGGGGTCTCGGTGGCTATGGCTATGGAGGCGGCACGTACATGGACCCAAAATCTGGCAAGGGTTTCATCATCGCGATTGCTGCAATCACCTTTATTGCTGTGCTCATCATCTTCGTCCTGGTGGTGTCGAGGCAGAACGCTGCACAGTCTCCCTCGTTCTATCTGGCCTCCATCATTATTTGTGCCATCCTGGCTGCGCTCATGCTCATCGCCACCATCGTGTACCTGGTCGCTGTTAACCCCACCTCTCAGACGTCTGGATCCATGATgtataatcagatcttgcagcTGTGTGCGCAATACCAGAACCAAGATCAGGCCTCTggcatttttataaatcaatatttatacCACTATTGTGTAGTGGAGCCTGAAGAGGCCATTGCCATAGTTCTTGGGTTTCTGGTTGTGGTCGGATTGATCATCTTACTTGTGTTCGCGGTGAAGACCCGAGGGCAGATCAGGAGATACGGCAGGGAGCGCGTTCTGTGGTATGACGTGAAGACCATCACCGACGGACTCACATCCCAAGGCATCGGGGAATGGgttAATAATGTGTCTGGAGATCCAGAGGCTTTTGTCAATGACCACAATGATCAAGTTGCAGTTGCACAGCCAATGGTTCACAGCCAGAAACCAGTTTACGTTccaagtaGTTCTGACGTGACAAGCTCTTTAAGTGGACTGAAAAGTAAACTGAGAGACTATGACACTGGAGAGTCTGGAGATGAGCTGGACACGGACTATCAAAGTGAGTATCCTCCTATCATTAATGAGCAGGAGAGGCTTGAGTACAAGAGAGAGTTTGACAGAGACCACATGGAGTACAAGCGTCTTCAGTCTGAGCTAGATGATATTAATCAGGGCTTGGCAGATACGGATCGAGAGCTAGATGGCTTGCAGGAAGGCAGCCCACAGTTCATGGATGCCATGGATGTGTACAGCAGGCTCAAAAGTTTGAAGAAGTCTCCAGACTAtcagatgaaaaagaaaaggtgtAAAGAGCTGAAGACAAAACTGTCCTTGATCAAAAGAAGGGTCAGCGACTATGACCACAGACAATAAAACCAGGCACTAGAAACTCCGGAGAGTATGTTGCCacatgatgttttgttttgggacTTTAGTGTATCTTTATGTCTGTATTAAAAATCTGTATCACTGTTATTATCAAAAACTGTATGGCTGCTGTATGACAGGTTTTTTGCTTTTAAGTAAGCTTGATCAAAATATTGTGGTATcaatgaagtatttttttattttatttttaaagctagATAAAGtcttcttttaacatttttatctttttctgaAGATATGTAGTCAAGTTAAATTTAGTGTAGGCAATCTTTAATATGAGCAAAACTGTGACcacttttttttgtagtttcagGGATCTTAAAATACATTCTAATGTTGTTTGTTGTAATGTCTTtgtggcttttcttttttacttgtTGATTAATCTGTCACCAGAATAACAAtctatgctgtttttttaagcatgcaCAGAACAGGTGTGAATTcagtttaatttcatttcattatttggtTCTTTAAATCTATAGAGAATTAAACCATATTAATGTGGCAGACGAAATATGTTGAATGTACAGTACACTTTTATGCTCGTTATTTGTGTAAAGATTTGGTCAAATAAAAGGCATTCAATTTCAAA

Function

GO:

id name namespace
GO:0005923 bicellular tight junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51347 lncRNA downstream 268660 9777633 ~ 9778238 (-) True G34877
TU51341 lncRNA downstream 280291 9766268 ~ 9766607 (-) True G34871
TU51339 lncRNA downstream 282366 9764073 ~ 9764532 (-) True G34869
TU51125 lncRNA downstream 798857 9246920 ~ 9248041 (-) True G34704
TU50983 lncRNA downstream 986084 9013306 ~ 9060814 (-) True G34594
TU51619 lncRNA upstream 228851 10281409 ~ 10296141 (-) True G35035
TU51637 lncRNA upstream 285189 10337747 ~ 10341167 (-) True G35047
TU51725 lncRNA upstream 326208 10378766 ~ 10378998 (-) True G35107
TU51762 lncRNA upstream 460372 10512930 ~ 10513285 (-) True G35139
TU51766 lncRNA upstream 464113 10516671 ~ 10517342 (-) True G35142
XM_043238205.1 mRNA downstream 124 10042534 ~ 10046774 (-) True gtf2h2
XM_043238206.1 mRNA downstream 442 10042534 ~ 10046456 (-) False gtf2h2
XM_043238611.1 mRNA downstream 12494 10028474 ~ 10034404 (-) True naaladl1
XM_043240807.1 mRNA downstream 185524 9843314 ~ 9861374 (-) False tango2
XM_043240806.1 mRNA downstream 185524 9843314 ~ 9861374 (-) True tango2
XM_043239509.1 mRNA upstream 1421 10053979 ~ 10058774 (-) True marveld2b
XM_043239513.1 mRNA upstream 6351 10058909 ~ 10060421 (-) True ak6
XM_043238175.1 mRNA upstream 21414 10073972 ~ 10079484 (-) True ankrd34bb
XM_043240290.1 mRNA upstream 27733 10080291 ~ 10083670 (-) True dhfr
XM_043240288.1 mRNA upstream 31161 10083719 ~ 10087885 (-) False si:ch211-214j8.12
TU51236 other downstream 644275 9337828 ~ 9402623 (-) True G34789
TU51091 other downstream 826391 9215508 ~ 9220507 (-) False vamp5
TU50964 other downstream 1116845 8929470 ~ 8930053 (-) True G34580
TU50888 other downstream 1369180 8674549 ~ 8677718 (-) False LOC122345093
TU50638 other downstream 1615323 8429700 ~ 8431575 (-) True timm8b
XR_006251099.1 other upstream 272557 10325115 ~ 10335342 (-) False si:dkey-96l17.6
TU51745 other upstream 408650 10461208 ~ 10461709 (-) True G35122
TU52098 other upstream 815806 10868364 ~ 10874064 (-) True G35371
TU52116 other upstream 871369 10923927 ~ 10926163 (-) True G35384
TU52323 other upstream 1367397 11419955 ~ 11467122 (-) False hmgn7

Expression Profile