RNA id: XM_043239516.1


Basic Information

Item Value
RNA id XM_043239516.1
length 4793
RNA type mRNA
GC content 0.42
exon number 17
gene id antxr2a
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 14573555 ~ 14616878 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tgatttttttaaatagtcctATTCAAACACACATCCTGTCAAACAAAAGCATCGCAGCTGCTGGGTGTGTGTGGAAGAGCCAAGCGGCATTTTGACCTCAAAACCCTGTCTCACATCTGGGCGGACGCGCATGCGCACCAAAACTGGGTGAAGTACTCAAACTCGCAAAGAACTTTTGAAACAACTTCTCTGCACTTTTCTTGTCATCACTCGTTTCGTTTTAGGGGTGGCGTAAAACGATAAGTGAAGAAATCAGATGTAGCGACGTTGCACGTCTCACAGGAAGATGAAGAACCTTTCTGCAACGCTATAAATTGGATCATGTTGCGCTAGACCAGAAACGTTGTTTTGAACTTGACATTGCCGCTTCATTTGAGAAAACGCCATTCAAGTCAGTTTTAGGCCCACTTTTACGATTTTATTCCGTGGATGCACAACTCGCCGTTATGACAAAGAAAACTCTCTTGACCGTGGCGACCACGGTGACGCTTTTcttctgtttatgtttttcaacTTTCAAAGCTGAAAGCTCTTCTTGCCACGGAGCATACGACCTTTACTTTGTTTTGGACCGATCTGGGAGTGTTTCGACCGACTGGACTCAGATCTACGATTTCGTCAAAAATCTTACAGAGAAATTTGTGAGTCCAAATATGCGAGTGTCCTTCATAGTGTTTTCATCGAAAGCAGAGATCGTGTTAGAGCTCACTGGAGACAGggaaaaaataaataaaggactCAGGGATTTAAGTGCAGTCAAACCAGCAGGAGAAACCTACATGCATGAAGGAATTAAACAGGCAACTAAACAAATGAAAGATCAGCTTAAAAAGTCCTCTAGCATCATTGTTGCTTTGACCGATGGAAAGCTTGAACCATATATCCATGAACTCACTAAGGAGGAGgcagatttagcaaggatgcatggGGCCCGTGTGTACTGTGTTGGCGTGAAGGACTTTGATGAGGAACAGCTCGCCGATGTGGCTGATACCAGGGAGCAAGTGTTCCCAGTCAAAGGAGGCTTTCAAGCTCTCAAAGGCATTGTTAACTCGATCCTCAAGCAATCATGCACAGAGATTCTAACAGTGGAGCCGTCCAGCGTCTGCGTGAACGAGACCTTTGACATTGTTTTGAGAGGGAACGGGTTCACACTGGGGAGGCAAACAGAAGGAGTGCTCTGCAGTTTCATAGTGGATGGAGTTACTCTTCAGGTGAAGCCAAGCAAGGTGAAGGACAACTATATCCTGTGTCCTGCTCCAGTGCTGCAGTCAGTGGGACAAGAAATGGACGTTCTGATCAGTTTAAATAAGAACTCATCATATATTTCCAGTGCTTTCATCATCACTGCCTCCACATGTTCGGACGGTACAGTGGTGGTAATTGTGCTCTTGGTGCTCTTGCTGCTGTTGGCTTTGGCTCTGATGTGGTGGTTCTGGCCTCTCTGCTGCACTATCGTTATTAAAGACCCACCCCCTCAAAgacctcctccacctccacctAAGCCAGAGCCAGAACCAATATCCAAGAAGAAGTGGCCAACCGTGGATGCATCTtattatggaggaagaggagctgGTGGAATTAGACGCATGGAGGTCCGCTGGGGAGAGAAAGGGTCCACAGAGGAGGGTGCACGTCTCGAGAAGGCCAAGAATGCAGTGGTTTCAATACAAGAGGAAGCAGAAGAACCCATGATCAAAAAGCCATCTGCACCCACACCAACGTACCATCAATCTGAATCCAAGTGGTATACTCCAATCAGGGGTCGACTTGATGCACTGTGGGCTCTTCTGCGGCGGCAATATGACCGAGTTTCACTCATGCGCCCAACTACCGCAGATAAGGGACGCTGTATAAACTTTAACCGGGTGCAACATCAATAGACGACAGCATCCGTCTCTGAAAACATTGACTTCCAAGTACATCAGAtggaacaacagaaaaaaaaagttctttccTCGAGATGACATAGCTTATCATTGGCCACTTCAGAGTATCTTATTTCAGCGCTTACATGTATTGGCTTTCCAAAACCTATAATTCTGATATCTCTCAAGCTACTGAATGGCAAGCGGATGGCTAAATagattaccaaaaaaaaagtgtctgatTTTTGCAGCTGATCTGGTTAGCTTTAATGCACATCAAAGGCTTTTTCATGTTCTGACCATATTGTGccttctgtgaaaaaaaaaaaacccaacaaatctTATGGACACAGACGgaggctatttaaaaaaaaacagaaaaaaaaacagaatgagaTGAGGCTCTTTGCCGTTGGCTGAGAAGTAGAACTAATCCCAGTAGGCTCATGGAGTGCAGTAGTACTTTGCCTCTTGGCAGTGTCTCTTCACAAAAATCTCTCCAAGCCCACTATCGTCGGATGCCTAGCGGGGCTTCTTTGACTGGAGATCTTGTCATTTTAACACTGAGAAGTGCACACGCATGACAAATTGTAGACAGAACGCCCTAAGGTATCGGACGCAGTAAGACTTTGCCCTTTAGTTTGTGAAGACACCTTTCTATCAATGCGAGGACAGTGCAGAGAAATTAATAGAGCGTTATTGCACCGCAAGACACCCTGTGACCACAGCTCTCCGGCAAGGTTTTGAGGGACAGATTTACCTCTGGTGGTTGGTGCTTCCTCCCCATTTATTTGGCAGTCTGTTCGGTGCTCACTAATGCATAGACCTTCGCAATTCAGCAACATGCCCCTCAGTTAAAGGTTTTAATACATCAGTACAGCTGTCCAAACCACCCCATCTCCCCAAATGTCGTGCACAAGTTCTCTTGGCAACGGAATATCAAACTTTGATGGACTTTAGAGATTCTTCTTTTGTATGAGGTTTTCTGTAGAAATTAAGGAGTTCCTCAGCTGCGCTAATGTGACACCCTCATCCGATATACTCGGAAGATCAAACCGAAAGGGGCGACGGACGGATGAGTATTGTTCATTTCCAGAAATTATCCACATCGCACTCCCCCCTCCACTTGCGCACAGAAAAGCgagcaatatatatttattttagatttctttAACGCGCTGTCACGACGACGATCGCGAATGATGTCAGTGTCAGTGGAAACACTGTGGGGGAGGAAGGGGGCGGCAGCTGAAGAAAAAGGCTCGAACGATCCAGTCACTTTCGATACGCTACTTCAGATGCAAAATGGATATTCGAGTCGAAATCTGACAAAGCGTGCCGGCTTTGACGGGAAGTGGTATAGACAATGACCAGTGGCTGGGTCAGTGGGATGTCTCGGTGCAAGCAGGGAAGCTTATCAAATGACACTAAAAATAAGTTCAACAACCATCAAGTTTGAGGGGGGAACAGAATGGGGCGCAGTGGCTCACATTCGGTGGGCATGCAAGTGTGCAAGATGGCAGGACCAGTGGGGCAAAAAAGCCCTTGTTTAATGATTTCTTTGTTTCTATCGTAGTAATTGTAGGGACATTAATTAATGCTCCCCTCCACCCCTcccaaaaaaagagaacaaaatacatacagacaaagttcaaaaatgtttaatctttCCCAGACTGGCAAGTTAAGCTAATCTTGGATAGCTAGGTGAGTGTAATTTTCGTTCtcatttttatctgtatttCTCATGTCACGGATCATAAATGCCAGTGTTAGCACttattaaagatttaattaGGTTTTACATGTTAGTTGCACTGTGGCTTAATATTTTTACCAGCTCCTTACATGCTATTAATCCACCTTAACATCAGCAGAGCACATCTGCTCTGCTTcctctttattattgtttttgcttttttatttaccttttatttttatgttgcattttacgttgttgtatttatgttttcacTTCATTTGTGGTTCTTGTgtgttatgtattttatatgacTCAGTAATGCGTTCGTAGAAAAACTCTTTGTAAACTTTGTGTAGCAAATTTGGGTTATTCTTTGTAATACTGAACTAAGCACACcagctgtaaaaaataatgttagtCATTTTTGATTAGGAAAAAAAGCTACTCGCGCCTGTTTTAACCTTAAAACAGAATGGGTCGCAAAATTTTGATCTAGAAatcggataaaaaaaaaaaggatttatttaatttttaagaaaCTCAGTGATGACAATTGTGCACTATTTGTTGTACATAAAAAGGCAAAGAATTAATGTATTGGTactgttaatttaattaaaacccaCTTAGGTTtagacacatttttttatatatatattagtacttGTGGCCCTTGTGATTATAATGCCTCGTGTCCCGCTGCATTCCGGCCAATGAATGTAATTTCAGTAGtaacttatatttatttctctctgaAAACAGTGGGTCTGCAGATGTAAACTTCAATAGTGCACTGATTTAAAAGTACTATTAAAGTAGtgcacagaaacatttttttaatgcacataatttttttaaataataataaataaaaatgcagaaggTACACTGCCACTTTATTTTACGACTTTTAATTGAACAAAATTGGCATTCAACttattgatttgtttctcaCCAGCATGAGATGCTACTAAGACACTCAGATCCACCATAATCAATTAGACCGCGTTCACTGTTAGTCACACTGGGTTATTTTGTTTAGTAACGACACCATACTCATTAAAGCATTTAGTACGTCTCAGCCTGATTTCAGTTGAATCTCACTTAGTCTCATCTTCACATTTTTCCTTTATTCATTATTgagtttaagatatttttgtatcttttgtatttgcattttgcatttatttgaataaaataaatggcacgttttttttaaa

Function

GO:

id name namespace
GO:0000132 establishment of mitotic spindle orientation biological_process
GO:0005768 endosome cellular_component
GO:0030496 midbody cellular_component
GO:0005886 plasma membrane cellular_component
GO:0032154 cleavage furrow cellular_component
GO:0070938 contractile ring cellular_component
GO:0030864 cortical actin cytoskeleton cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003779 actin binding molecular_function

KEGG:

id description
K20909 ANTXR; anthrax toxin receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53966 lncRNA downstream 84827 14485814 ~ 14488728 (-) True G36602
XR_006250925.1 lncRNA downstream 105778 14464304 ~ 14467777 (-) True LOC122344807
XR_006250924.1 lncRNA downstream 107230 14464304 ~ 14466325 (-) False LOC122344807
TU53923 lncRNA downstream 223619 14349108 ~ 14349936 (-) True G36567
TU53864 lncRNA downstream 252561 14311768 ~ 14320994 (-) True G36537
TU54002 lncRNA upstream 35217 14652095 ~ 14652393 (-) True G36631
TU54076 lncRNA upstream 81858 14698736 ~ 14698953 (-) True G36696
TU54099 lncRNA upstream 263987 14880865 ~ 14881065 (-) True G36708
TU54112 lncRNA upstream 288507 14905385 ~ 14905621 (-) True G36714
TU54241 lncRNA upstream 552169 15169047 ~ 15169358 (-) True G36811
XM_043238385.1 mRNA downstream 72983 14493589 ~ 14500572 (-) True paqr3a
XM_043239122.1 mRNA downstream 226875 14334218 ~ 14346680 (-) False cnot6l
XM_043239121.1 mRNA downstream 226877 14334218 ~ 14346678 (-) True cnot6l
XM_043238974.1 mRNA downstream 273579 14293749 ~ 14299976 (-) False LOC122345141
XM_043238973.1 mRNA downstream 273754 14293749 ~ 14299801 (-) False LOC122345141
XM_043238705.1 mRNA upstream 89499 14706377 ~ 14717330 (-) True prkg2
XM_043238706.1 mRNA upstream 101646 14718524 ~ 14778259 (-) True rasgef1ba
XM_043238707.1 mRNA upstream 101646 14718524 ~ 14737308 (-) False rasgef1ba
XM_043239588.1 mRNA upstream 178471 14795349 ~ 14810245 (-) True cds1
XM_043240085.1 mRNA upstream 195679 14812557 ~ 14875477 (-) True wdfy3
TU53907 other downstream 271174 14292063 ~ 14302381 (-) True LOC122345141
XR_006250968.1 other downstream 516850 14045477 ~ 14056705 (-) False rnf214
XR_006250967.1 other downstream 516850 14045477 ~ 14056705 (-) True rnf214
XR_006251003.1 other downstream 564019 14001934 ~ 14009536 (-) False tmprss13b
XR_006251010.1 other upstream 589073 15205951 ~ 15264945 (-) False pdzd2
XR_006250970.1 other upstream 679140 15296018 ~ 15308440 (-) False zfr
XR_006251075.1 other upstream 733138 15350016 ~ 15367413 (-) False npr3
TU54482 other upstream 956233 15573111 ~ 15574817 (-) False alkbh2
TU54484 other upstream 956380 15573258 ~ 15574817 (-) False alkbh2

Expression Profile